Wall clock time and date at job start Wed Apr 1 2020 04:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34857 * 125.89965 * 2 1 4 4 C 1.36419 * 107.61044 * 180.02562 * 3 2 1 5 5 C 1.48510 * 126.21780 * 179.97438 * 4 3 2 6 6 C 1.39488 * 120.00910 * 0.02562 * 5 4 3 7 7 C 1.38027 * 120.23737 * 179.97438 * 6 5 4 8 8 C 1.38362 * 120.24677 * 359.97438 * 7 6 5 9 9 F 1.35101 * 119.99269 * 179.97438 * 8 7 6 10 10 C 1.39926 * 120.01020 * 359.96162 * 8 7 6 11 11 C 1.47601 * 120.11503 * 180.02562 * 10 8 7 12 12 O 1.21606 * 119.99944 * 306.72656 * 11 10 8 13 13 N 1.34776 * 119.99849 * 126.72649 * 11 10 8 14 14 C 1.36894 * 119.99946 * 2.12403 * 13 11 10 15 15 H 1.07995 * 120.00191 * 307.77702 * 14 13 11 16 16 C 1.39035 * 119.99414 * 127.77821 * 14 13 11 17 17 N 1.31375 * 119.99423 * 178.70357 * 16 14 13 18 18 Si 1.86796 * 120.00639 * 358.70359 * 16 14 13 19 19 H 1.48500 * 109.47122 * 94.01714 * 18 16 14 20 20 H 1.48493 * 109.47510 * 214.01923 * 18 16 14 21 21 H 1.48503 * 109.46913 * 334.02114 * 18 16 14 22 22 C 1.46501 * 119.99862 * 182.12530 * 13 11 10 23 23 C 1.50701 * 109.47000 * 93.33297 * 22 13 11 24 24 O 1.20824 * 120.00128 * 359.97438 * 23 22 13 25 25 O 1.34227 * 120.00061 * 179.97438 * 23 22 13 26 26 C 1.38918 * 120.00800 * 179.72461 * 5 4 3 27 27 C 1.40827 * 107.56417 * 0.02562 * 4 3 2 28 28 N 1.30687 * 108.10645 * 359.97438 * 27 4 3 29 29 H 1.08999 * 109.46930 * 89.99868 * 1 2 3 30 30 H 1.09002 * 109.47228 * 209.99361 * 1 2 3 31 31 H 1.09002 * 109.46867 * 329.99304 * 1 2 3 32 32 H 1.08000 * 126.19796 * 359.74343 * 3 2 1 33 33 H 1.08002 * 119.88676 * 359.97034 * 6 5 4 34 34 H 1.08002 * 119.87567 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99701 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47111 * 213.33032 * 22 13 11 37 37 H 1.08996 * 109.47613 * 333.33504 * 22 13 11 38 38 H 0.96703 * 116.99913 * 179.97438 * 25 23 22 39 39 H 1.08001 * 120.11953 * 0.02562 * 26 5 4 40 40 H 1.07995 * 125.95372 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2558 1.0924 0.0000 4 6 3.5510 0.6643 -0.0006 5 6 4.7602 1.5266 -0.0013 6 6 4.6269 2.9151 -0.0009 7 6 5.7475 3.7209 -0.0011 8 6 7.0112 3.1574 -0.0011 9 9 8.1045 3.9511 -0.0018 10 6 7.1569 1.7658 -0.0001 11 6 8.5039 1.1622 0.0004 12 8 9.3163 1.4877 -0.8438 13 7 8.8333 0.2504 0.9366 14 6 7.9049 -0.1483 1.8604 15 1 7.3698 0.5886 2.4408 16 6 7.6511 -1.5019 2.0512 17 7 6.7788 -1.8854 2.9556 18 14 8.5504 -2.7751 1.0219 19 1 9.7568 -3.2398 1.7525 20 1 7.6517 -3.9291 0.7659 21 1 8.9577 -2.1685 -0.2709 22 6 10.1848 -0.3142 0.9656 23 6 11.0440 0.4877 1.9090 24 8 10.5756 1.4340 2.4963 25 8 12.3296 0.1507 2.0966 26 6 6.0243 0.9505 0.0039 27 6 3.5332 -0.7439 -0.0015 28 7 2.2860 -1.1343 -0.0010 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5140 32 1 1.9238 2.1201 -0.0039 33 1 3.6433 3.3613 -0.0006 34 1 5.6375 4.7953 -0.0012 35 1 6.6019 -2.8297 3.0890 36 1 10.1392 -1.3486 1.3061 37 1 10.6146 -0.2798 -0.0354 38 1 12.8410 0.6950 2.7110 39 1 6.1301 -0.1243 0.0081 40 1 4.3993 -1.3889 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608091652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:30 Heat of formation + Delta-G solvation = -42.777844 kcal Electronic energy + Delta-G solvation = -30585.177294 eV Core-core repulsion = 26089.349034 eV Total energy + Delta-G solvation = -4495.828261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.29741 -41.05599 -39.96488 -38.97940 -37.65170 -35.62751 -34.91626 -33.39258 -32.13034 -31.56144 -30.97922 -28.76359 -28.04990 -26.29997 -25.12351 -23.39636 -22.57049 -21.62953 -20.58701 -20.30276 -19.20005 -17.93758 -17.64057 -17.03782 -16.78800 -16.55271 -15.97392 -15.58655 -15.41830 -15.25283 -15.06572 -14.83416 -14.68865 -14.16358 -13.87090 -13.65839 -13.36682 -13.12597 -12.92426 -12.89482 -12.75961 -12.55621 -12.45347 -12.29719 -11.95081 -11.76607 -11.65574 -11.22451 -11.02993 -10.84161 -10.56345 -10.44010 -10.21672 -9.90238 -9.42095 -9.32950 -9.18188 -8.96531 -8.51142 -7.96738 -7.39542 -6.53587 -4.38021 1.24094 1.60874 2.10095 2.56757 2.80733 2.93546 2.99458 3.10579 3.11874 3.21619 3.76583 3.95788 4.13542 4.34288 4.49787 4.71350 4.79383 4.84966 5.00624 5.07899 5.13714 5.25356 5.32852 5.44030 5.53682 5.61943 5.73058 5.78414 5.82461 5.89239 6.03314 6.29081 6.41009 6.49903 6.74878 6.82423 6.89101 6.98247 7.06090 7.16152 7.29947 7.81530 7.85322 8.21601 8.47180 8.75011 9.05968 9.39381 10.53645 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.004391 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.962556 B = 6375.477179 C = 8152.259994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.380 5.380 3 C 0.060 3.940 4 C -0.182 4.182 5 C -0.022 4.022 6 C -0.085 4.085 7 C -0.162 4.162 8 C 0.124 3.876 9 F -0.133 7.133 10 C -0.113 4.113 11 C 0.547 3.453 12 O -0.573 6.573 13 N -0.446 5.446 14 C -0.340 4.340 15 H 0.106 0.894 16 C 0.072 3.928 17 N -0.852 5.852 18 Si 0.859 3.141 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.255 1.255 22 C 0.108 3.892 23 C 0.463 3.537 24 O -0.495 6.495 25 O -0.527 6.527 26 C -0.015 4.015 27 C 0.078 3.922 28 N -0.299 5.299 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.175 0.825 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.278 0.722 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.400 0.600 39 H 0.144 0.856 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 3.826 -4.797 10.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.161 5.161 3 C -0.087 4.087 4 C -0.193 4.193 5 C -0.024 4.024 6 C -0.104 4.104 7 C -0.181 4.181 8 C 0.104 3.896 9 F -0.112 7.112 10 C -0.117 4.117 11 C 0.337 3.663 12 O -0.456 6.456 13 N -0.167 5.167 14 C -0.468 4.468 15 H 0.124 0.876 16 C -0.137 4.137 17 N -0.486 5.486 18 Si 0.686 3.314 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.178 1.178 22 C -0.016 4.016 23 C 0.303 3.697 24 O -0.380 6.380 25 O -0.338 6.338 26 C -0.034 4.034 27 C -0.109 4.109 28 N -0.119 5.119 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.192 0.808 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.258 0.742 39 H 0.162 0.838 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.633 2.846 -5.201 11.312 hybrid contribution 1.522 0.410 0.490 1.651 sum -8.111 3.257 -4.711 9.929 Atomic orbital electron populations 1.21803 0.74460 1.04385 1.03085 1.48348 1.06530 1.03924 1.57335 1.22418 0.90633 0.93194 1.02410 1.18785 0.91713 0.92977 1.15837 1.17907 0.91056 0.91775 1.01653 1.20838 0.97728 0.92235 0.99606 1.20762 0.90502 1.00479 1.06363 1.17667 0.83078 0.87099 1.01757 1.91500 1.52890 1.73266 1.93535 1.19641 0.95010 0.91643 1.05359 1.18163 0.86462 0.80841 0.80846 1.90689 1.51735 1.64027 1.39141 1.43221 1.06869 1.38844 1.27790 1.19069 1.16636 0.93088 1.17965 0.87628 1.25495 0.95154 0.97499 0.95518 1.69613 1.31122 1.17433 1.30453 0.87143 0.80210 0.81879 0.82179 1.19391 1.20425 1.17848 1.21352 0.84992 0.96458 0.98841 1.24413 0.80100 0.83717 0.81475 1.90685 1.73147 1.28117 1.46084 1.84565 1.24967 1.60198 1.64106 1.21161 0.89055 1.00640 0.92522 1.24083 0.95026 0.94442 0.97383 1.77287 1.01873 1.07797 1.24967 0.90970 0.89375 0.89646 0.80826 0.85689 0.84908 0.91129 0.88307 0.86641 0.74202 0.83823 0.79468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.46 59.85 0.69 1.46 16 2 N -0.38 -4.81 4.00 -67.89 -0.27 -5.08 16 3 C 0.06 0.73 10.87 -16.88 -0.18 0.55 16 4 C -0.18 -2.80 6.04 -105.34 -0.64 -3.43 16 5 C -0.02 -0.37 5.87 -104.94 -0.62 -0.98 16 6 C -0.09 -1.21 9.55 -39.19 -0.37 -1.58 16 7 C -0.16 -2.52 10.00 -39.61 -0.40 -2.91 16 8 C 0.12 2.47 7.27 -38.90 -0.28 2.19 16 9 F -0.13 -2.86 16.62 2.25 0.04 -2.82 16 10 C -0.11 -2.43 5.03 -104.95 -0.53 -2.96 16 11 C 0.55 13.23 6.88 -12.44 -0.09 13.14 16 12 O -0.57 -14.74 16.34 5.27 0.09 -14.65 16 13 N -0.45 -10.70 1.55 -117.26 -0.18 -10.88 16 14 C -0.34 -8.55 7.06 -15.00 -0.11 -8.65 16 15 H 0.11 2.97 7.93 -52.49 -0.42 2.55 16 16 C 0.07 1.77 5.49 -17.45 -0.10 1.68 16 17 N -0.85 -22.02 13.95 55.50 0.77 -21.24 16 18 Si 0.86 18.43 24.75 -169.99 -4.21 14.22 16 19 H -0.27 -5.59 7.02 56.52 0.40 -5.19 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.25 -5.35 6.66 56.52 0.38 -4.97 16 22 C 0.11 2.35 4.58 -5.19 -0.02 2.33 16 23 C 0.46 9.79 8.38 36.01 0.30 10.09 16 24 O -0.50 -12.08 17.15 -18.75 -0.32 -12.40 16 25 O -0.53 -8.63 13.42 -39.25 -0.53 -9.16 16 26 C -0.01 -0.29 7.93 -38.84 -0.31 -0.60 16 27 C 0.08 1.28 11.41 -17.06 -0.19 1.09 16 28 N -0.30 -4.81 12.54 30.80 0.39 -4.43 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 1.41 7.27 -52.49 -0.38 1.03 16 33 H 0.13 1.27 6.99 -52.49 -0.37 0.91 16 34 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.10 2.08 3.56 -51.93 -0.18 1.89 16 37 H 0.12 2.35 7.30 -51.93 -0.38 1.97 16 38 H 0.40 4.60 9.10 45.56 0.41 5.01 16 39 H 0.14 2.87 6.34 -52.49 -0.33 2.54 16 40 H 0.19 3.07 7.34 -52.49 -0.39 2.68 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -34.32 355.54 -4.60 -38.92 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -2.89 Total: 10.76 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -2.84 Total: 11.40 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.71 Total: -41.63 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.76 Total: -36.21 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.21 Total: 14.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.32 -4.60 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608091652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.858 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds