Wall clock time and date at job start Wed Apr 1 2020 04:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34857 * 125.89965 * 2 1 4 4 C 1.36419 * 107.61044 * 180.02562 * 3 2 1 5 5 C 1.48510 * 126.21780 * 179.97438 * 4 3 2 6 6 C 1.39488 * 120.00910 * 0.02562 * 5 4 3 7 7 C 1.38027 * 120.23737 * 179.97438 * 6 5 4 8 8 C 1.38362 * 120.24677 * 359.97438 * 7 6 5 9 9 F 1.35101 * 119.99269 * 179.97438 * 8 7 6 10 10 C 1.39926 * 120.01020 * 359.96162 * 8 7 6 11 11 C 1.47601 * 120.11503 * 180.02562 * 10 8 7 12 12 O 1.21606 * 119.99944 * 306.72656 * 11 10 8 13 13 N 1.34776 * 119.99849 * 126.72649 * 11 10 8 14 14 C 1.36894 * 119.99946 * 2.12403 * 13 11 10 15 15 H 1.07995 * 120.00191 * 307.77702 * 14 13 11 16 16 C 1.39035 * 119.99414 * 127.77821 * 14 13 11 17 17 N 1.31375 * 119.99423 * 178.70357 * 16 14 13 18 18 Si 1.86796 * 120.00639 * 358.70359 * 16 14 13 19 19 H 1.48500 * 109.47122 * 94.01714 * 18 16 14 20 20 H 1.48493 * 109.47510 * 214.01923 * 18 16 14 21 21 H 1.48503 * 109.46913 * 334.02114 * 18 16 14 22 22 C 1.46501 * 119.99862 * 182.12530 * 13 11 10 23 23 C 1.50701 * 109.47000 * 93.33297 * 22 13 11 24 24 O 1.20824 * 120.00128 * 359.97438 * 23 22 13 25 25 O 1.34227 * 120.00061 * 179.97438 * 23 22 13 26 26 C 1.38918 * 120.00800 * 179.72461 * 5 4 3 27 27 C 1.40827 * 107.56417 * 0.02562 * 4 3 2 28 28 N 1.30687 * 108.10645 * 359.97438 * 27 4 3 29 29 H 1.08999 * 109.46930 * 89.99868 * 1 2 3 30 30 H 1.09002 * 109.47228 * 209.99361 * 1 2 3 31 31 H 1.09002 * 109.46867 * 329.99304 * 1 2 3 32 32 H 1.08000 * 126.19796 * 359.74343 * 3 2 1 33 33 H 1.08002 * 119.88676 * 359.97034 * 6 5 4 34 34 H 1.08002 * 119.87567 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99701 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47111 * 213.33032 * 22 13 11 37 37 H 1.08996 * 109.47613 * 333.33504 * 22 13 11 38 38 H 0.96703 * 116.99913 * 179.97438 * 25 23 22 39 39 H 1.08001 * 120.11953 * 0.02562 * 26 5 4 40 40 H 1.07995 * 125.95372 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2558 1.0924 0.0000 4 6 3.5510 0.6643 -0.0006 5 6 4.7602 1.5266 -0.0013 6 6 4.6269 2.9151 -0.0009 7 6 5.7475 3.7209 -0.0011 8 6 7.0112 3.1574 -0.0011 9 9 8.1045 3.9511 -0.0018 10 6 7.1569 1.7658 -0.0001 11 6 8.5039 1.1622 0.0004 12 8 9.3163 1.4877 -0.8438 13 7 8.8333 0.2504 0.9366 14 6 7.9049 -0.1483 1.8604 15 1 7.3698 0.5886 2.4408 16 6 7.6511 -1.5019 2.0512 17 7 6.7788 -1.8854 2.9556 18 14 8.5504 -2.7751 1.0219 19 1 9.7568 -3.2398 1.7525 20 1 7.6517 -3.9291 0.7659 21 1 8.9577 -2.1685 -0.2709 22 6 10.1848 -0.3142 0.9656 23 6 11.0440 0.4877 1.9090 24 8 10.5756 1.4340 2.4963 25 8 12.3296 0.1507 2.0966 26 6 6.0243 0.9505 0.0039 27 6 3.5332 -0.7439 -0.0015 28 7 2.2860 -1.1343 -0.0010 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5140 32 1 1.9238 2.1201 -0.0039 33 1 3.6433 3.3613 -0.0006 34 1 5.6375 4.7953 -0.0012 35 1 6.6019 -2.8297 3.0890 36 1 10.1392 -1.3486 1.3061 37 1 10.6146 -0.2798 -0.0354 38 1 12.8410 0.6950 2.7110 39 1 6.1301 -0.1243 0.0081 40 1 4.3993 -1.3889 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608091652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:29 Heat of formation + Delta-G solvation = -66.952177 kcal Electronic energy + Delta-G solvation = -30586.225572 eV Core-core repulsion = 26089.349034 eV Total energy + Delta-G solvation = -4496.876538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.84202 -42.14482 -41.68044 -40.60161 -39.11218 -37.28817 -36.75095 -34.36712 -34.06671 -32.88131 -32.29492 -30.03396 -29.57796 -27.23937 -27.01910 -24.86115 -23.90665 -23.12765 -21.85611 -21.51819 -20.84044 -19.52672 -19.29285 -18.65098 -18.21571 -17.83876 -17.56041 -17.25715 -16.92559 -16.70540 -16.43361 -16.29134 -16.21868 -15.45800 -15.37543 -15.13140 -14.73822 -14.60679 -14.37164 -14.29236 -14.15259 -13.75980 -13.67415 -13.57444 -13.51422 -13.09147 -13.02270 -12.85718 -12.64755 -12.36879 -12.20649 -12.00364 -11.66703 -11.57809 -11.26984 -10.80205 -10.48268 -10.31558 -9.91599 -9.87324 -8.61520 -8.47250 -6.36170 -0.08080 0.26233 1.00787 1.10248 1.20073 1.29924 1.39327 1.47757 1.71372 1.79146 2.13062 2.15067 2.47507 2.85559 2.99755 3.35196 3.53992 3.73765 3.82630 3.94245 4.04424 4.12232 4.14962 4.29143 4.33339 4.35425 4.43408 4.52350 4.76288 4.80816 4.83096 4.99735 5.10609 5.19315 5.30602 5.34031 5.53690 5.60316 5.61780 5.95532 5.97863 6.13891 6.17647 6.70933 6.83404 6.94637 7.12788 7.49992 8.63109 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.004391 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.962556 B = 6375.477179 C = 8152.259994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.373 5.373 3 C 0.092 3.908 4 C -0.217 4.217 5 C -0.014 4.014 6 C -0.066 4.066 7 C -0.143 4.143 8 C 0.090 3.910 9 F -0.152 7.152 10 C -0.148 4.148 11 C 0.538 3.462 12 O -0.600 6.600 13 N -0.453 5.453 14 C -0.332 4.332 15 H 0.064 0.936 16 C 0.042 3.958 17 N -0.887 5.887 18 Si 0.907 3.093 19 H -0.249 1.249 20 H -0.273 1.273 21 H -0.252 1.252 22 C 0.097 3.903 23 C 0.471 3.529 24 O -0.536 6.536 25 O -0.506 6.506 26 C -0.035 4.035 27 C 0.054 3.946 28 N -0.332 5.332 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.230 0.770 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.282 0.718 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.426 0.574 39 H 0.121 0.879 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 5.152 -5.329 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.154 5.154 3 C -0.056 4.056 4 C -0.228 4.228 5 C -0.015 4.015 6 C -0.084 4.084 7 C -0.162 4.162 8 C 0.070 3.930 9 F -0.130 7.130 10 C -0.152 4.152 11 C 0.329 3.671 12 O -0.485 6.485 13 N -0.174 5.174 14 C -0.460 4.460 15 H 0.082 0.918 16 C -0.164 4.164 17 N -0.522 5.522 18 Si 0.730 3.270 19 H -0.174 1.174 20 H -0.199 1.199 21 H -0.175 1.175 22 C -0.027 4.027 23 C 0.312 3.688 24 O -0.425 6.425 25 O -0.319 6.319 26 C -0.055 4.055 27 C -0.132 4.132 28 N -0.154 5.154 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.246 0.754 33 H 0.201 0.799 34 H 0.191 0.809 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.146 0.854 38 H 0.288 0.712 39 H 0.139 0.861 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.982 4.141 -5.717 13.907 hybrid contribution 2.106 0.027 0.670 2.211 sum -9.875 4.168 -5.047 11.847 Atomic orbital electron populations 1.22292 0.71284 1.06225 1.04988 1.48822 1.08252 1.03155 1.55173 1.23128 0.88988 0.95087 0.98411 1.18835 0.92838 0.92194 1.18975 1.18127 0.90148 0.93378 0.99878 1.21415 0.99811 0.90684 0.96455 1.21223 0.88671 1.02609 1.03665 1.18119 0.84349 0.86477 1.04096 1.91441 1.54173 1.73443 1.93985 1.19662 0.94133 0.92969 1.08407 1.18747 0.87545 0.80515 0.80312 1.90630 1.52916 1.64880 1.40048 1.43247 1.07675 1.39050 1.27411 1.18549 1.17344 0.92559 1.17542 0.91790 1.25949 0.95588 0.98709 0.96138 1.69694 1.32455 1.18069 1.31945 0.86381 0.79891 0.79645 0.81041 1.17388 1.19914 1.17536 1.21480 0.84354 0.96913 0.99958 1.24136 0.81248 0.82758 0.80611 1.90678 1.74326 1.29792 1.47662 1.84478 1.22811 1.60119 1.64494 1.21015 0.90260 0.99535 0.94652 1.23976 0.95045 0.95510 0.98675 1.77211 1.01986 1.09964 1.26207 0.88987 0.89581 0.85865 0.75401 0.79867 0.80942 0.90764 0.87434 0.85403 0.71222 0.86104 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 11.46 127.77 1.46 2.44 16 2 N -0.37 -8.28 4.00 -368.70 -1.48 -9.76 16 3 C 0.09 1.86 10.87 83.80 0.91 2.77 16 4 C -0.22 -6.41 6.04 -20.33 -0.12 -6.53 16 5 C -0.01 -0.44 5.87 -20.07 -0.12 -0.56 16 6 C -0.07 -1.61 9.55 22.52 0.22 -1.39 16 7 C -0.14 -4.09 10.00 22.25 0.22 -3.87 16 8 C 0.09 3.63 7.27 22.71 0.17 3.80 16 9 F -0.15 -6.74 16.62 44.97 0.75 -5.99 16 10 C -0.15 -6.74 5.03 -20.08 -0.10 -6.84 16 11 C 0.54 27.52 6.88 86.71 0.60 28.12 16 12 O -0.60 -32.39 16.34 -4.05 -0.07 -32.45 16 13 N -0.45 -22.81 1.55 -643.14 -0.99 -23.80 16 14 C -0.33 -17.71 7.06 84.09 0.59 -17.11 16 15 H 0.06 3.90 7.93 -2.91 -0.02 3.88 16 16 C 0.04 2.16 5.49 84.95 0.47 2.63 16 17 N -0.89 -47.75 13.95 21.68 0.30 -47.45 16 18 Si 0.91 38.62 24.75 68.60 1.70 40.32 16 19 H -0.25 -9.83 7.02 99.48 0.70 -9.13 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.25 -10.53 6.66 99.48 0.66 -9.87 16 22 C 0.10 4.29 4.58 85.63 0.39 4.68 16 23 C 0.47 20.07 8.38 71.24 0.60 20.66 16 24 O -0.54 -26.91 17.15 21.97 0.38 -26.54 16 25 O -0.51 -15.82 13.42 -51.39 -0.69 -16.51 16 26 C -0.04 -1.45 7.93 22.75 0.18 -1.27 16 27 C 0.05 1.84 11.41 85.50 0.98 2.81 16 28 N -0.33 -10.62 12.54 -56.47 -0.71 -11.33 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.23 1.91 7.27 -2.91 -0.02 1.89 16 33 H 0.18 2.35 6.99 -2.91 -0.02 2.33 16 34 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 36 H 0.11 4.51 3.56 -2.39 -0.01 4.50 16 37 H 0.13 5.28 7.30 -2.39 -0.02 5.27 16 38 H 0.43 8.93 9.10 -74.06 -0.67 8.26 16 39 H 0.12 5.36 6.34 -2.91 -0.02 5.34 16 40 H 0.17 6.13 7.34 -2.91 -0.02 6.11 16 Total: -1.00 -82.36 355.54 6.04 -76.33 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.41 Total: 26.84 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 6.44 Total: 30.35 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -2.88 Total: -92.34 kcal Atomic # 8 Polarization: -75.12 SS G_CDS: -0.38 Total: -75.50 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.75 Total: -5.99 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.70 Total: 40.32 kcal Total: -82.36 6.04 -76.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608091652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.373 kcal (2) G-P(sol) polarization free energy of solvation -82.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds