Wall clock time and date at job start Wed Apr 1 2020 04:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00599 * 2 1 4 4 C 1.52993 * 109.47681 * 180.02562 * 3 2 1 5 5 N 1.46510 * 109.46949 * 63.56086 * 4 3 2 6 6 C 1.37094 * 119.99923 * 266.26787 * 5 4 3 7 7 H 1.08001 * 119.99749 * 142.48724 * 6 5 4 8 8 C 1.38947 * 120.00269 * 322.48436 * 6 5 4 9 9 N 1.31418 * 120.00211 * 160.73716 * 8 6 5 10 10 Si 1.86801 * 120.00067 * 340.74142 * 8 6 5 11 11 H 1.48493 * 109.47336 * 95.23612 * 10 8 6 12 12 H 1.48505 * 109.46723 * 215.23631 * 10 8 6 13 13 H 1.48497 * 109.46922 * 335.23382 * 10 8 6 14 14 C 1.34769 * 119.99839 * 86.27087 * 5 4 3 15 15 O 1.21299 * 119.99972 * 359.97438 * 14 5 4 16 16 C 1.50697 * 120.00085 * 179.97438 * 14 5 4 17 17 C 1.50704 * 109.47332 * 179.97438 * 16 14 5 18 18 C 1.33719 * 122.07828 * 125.00523 * 17 16 14 19 19 S 1.76251 * 108.21968 * 179.78144 * 18 17 16 20 20 C 1.76180 * 89.83806 * 0.30295 * 19 18 17 21 21 C 1.47861 * 125.47272 * 179.97438 * 20 19 18 22 22 C 1.39979 * 120.56051 * 359.70030 * 21 20 19 23 23 C 1.38362 * 118.29799 * 179.97438 * 22 21 20 24 24 C 1.38346 * 119.30003 * 359.97438 * 23 22 21 25 25 N 1.31902 * 121.07696 * 0.02562 * 24 23 22 26 26 C 1.31713 * 121.87554 * 359.65478 * 25 24 23 27 27 N 1.30220 * 109.05237 * 359.69601 * 20 19 18 28 28 H 1.08997 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46510 * 299.99972 * 1 2 3 30 30 H 1.09000 * 109.46750 * 59.99877 * 1 2 3 31 31 H 1.08996 * 109.46908 * 59.99682 * 3 2 1 32 32 H 1.09005 * 109.47068 * 300.00326 * 3 2 1 33 33 H 1.09005 * 109.46947 * 303.56581 * 4 3 2 34 34 H 1.08990 * 109.47416 * 183.56186 * 4 3 2 35 35 H 0.96997 * 120.00622 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47106 * 60.00514 * 16 14 5 37 37 H 1.09000 * 109.47397 * 300.00253 * 16 14 5 38 38 H 1.08002 * 125.88373 * 0.02562 * 18 17 16 39 39 H 1.08001 * 120.85055 * 0.02562 * 22 21 20 40 40 H 1.07990 * 120.34880 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.46026 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.71787 * 180.31337 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9733 0.5331 -1.2378 6 6 4.1681 -0.8236 -1.2662 7 1 3.8963 -1.3899 -2.1448 8 6 4.7151 -1.4702 -0.1647 9 7 4.5615 -2.7675 -0.0210 10 14 5.6687 -0.4956 1.1120 11 1 4.7640 -0.1261 2.2301 12 1 6.7867 -1.3229 1.6327 13 1 6.2137 0.7369 0.4883 14 6 4.1845 1.2676 -2.3478 15 8 4.0117 2.4680 -2.3227 16 6 4.6353 0.5977 -3.6202 17 6 4.7967 1.6331 -4.7032 18 6 5.9399 1.7793 -5.3813 19 16 5.7235 3.0781 -6.5529 20 6 4.0702 3.3053 -5.9882 21 6 3.1141 4.3041 -6.5122 22 6 3.4895 5.1784 -7.5389 23 6 2.5575 6.0942 -7.9941 24 6 1.2963 6.1159 -7.4259 25 7 0.9704 5.2796 -6.4594 26 6 1.8204 4.3862 -5.9967 27 7 3.8235 2.4483 -5.0393 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6888 1.8463 0.8899 32 1 1.6888 1.8463 -0.8900 33 1 3.8532 0.5892 0.8555 34 1 3.9788 2.1782 0.0632 35 1 4.9430 -3.2189 0.7481 36 1 3.8905 -0.1363 -3.9279 37 1 5.5889 0.0981 -3.4496 38 1 6.8393 1.1986 -5.2385 39 1 4.4809 5.1387 -7.9653 40 1 2.8116 6.7840 -8.7851 41 1 0.5666 6.8294 -7.7795 42 1 1.5149 3.7150 -5.2076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001629261846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:02 Heat of formation + Delta-G solvation = 24.022681 kcal Electronic energy + Delta-G solvation = -27599.422630 eV Core-core repulsion = 23672.704234 eV Total energy + Delta-G solvation = -3926.718396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36870 -39.62457 -38.51115 -36.94331 -34.74778 -33.48145 -32.25340 -31.92475 -30.78399 -29.40542 -27.56677 -25.78531 -25.39871 -24.60126 -23.78034 -22.73594 -21.87643 -19.47088 -18.95714 -18.02246 -17.23411 -16.66118 -16.43987 -16.14457 -16.02713 -15.69644 -15.39719 -14.75171 -14.63038 -14.47544 -14.26010 -14.01746 -13.75297 -13.48945 -13.37469 -13.18978 -12.91889 -12.59713 -12.45579 -12.16472 -11.92906 -11.70589 -11.47479 -11.23719 -11.01222 -10.83733 -10.74422 -10.33086 -10.08020 -9.86448 -9.84955 -9.73402 -9.37497 -9.14798 -9.12162 -9.02937 -8.56650 -8.14109 -7.76161 -6.38779 -3.97608 0.18021 1.03147 1.36193 1.43087 1.76536 3.05508 3.08559 3.23741 3.29156 3.71604 3.76008 3.88363 4.17394 4.34611 4.36668 4.51990 4.59586 4.66935 4.85399 5.02841 5.07545 5.24298 5.35461 5.53909 5.58363 5.64436 5.72681 5.80544 5.82600 5.88762 5.90306 5.98485 6.06945 6.10392 6.13128 6.25036 6.32597 6.46251 6.46750 6.53488 7.38250 7.77217 7.84428 7.95828 8.13972 8.30010 9.02854 9.40727 9.73042 10.72396 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.003247 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.484152 B = 8620.177260 C =10063.120825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.055 3.945 4 C 0.104 3.896 5 N -0.456 5.456 6 C -0.330 4.330 7 H 0.103 0.897 8 C 0.072 3.928 9 N -0.860 5.860 10 Si 0.874 3.126 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.486 3.514 15 O -0.587 6.587 16 C -0.052 4.052 17 C 0.106 3.894 18 C -0.239 4.239 19 S 0.056 5.944 20 C 0.106 3.894 21 C -0.064 4.064 22 C -0.060 4.060 23 C -0.173 4.173 24 C 0.104 3.896 25 N -0.482 5.482 26 C 0.150 3.850 27 N -0.417 5.417 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.273 0.727 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.181 0.819 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 12.142 -12.804 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.023 4.023 4 C -0.019 4.019 5 N -0.177 5.177 6 C -0.458 4.458 7 H 0.120 0.880 8 C -0.135 4.135 9 N -0.495 5.495 10 Si 0.703 3.297 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.188 1.188 14 C 0.275 3.725 15 O -0.471 6.471 16 C -0.094 4.094 17 C -0.027 4.027 18 C -0.378 4.378 19 S 0.311 5.689 20 C -0.170 4.170 21 C -0.070 4.070 22 C -0.088 4.088 23 C -0.192 4.192 24 C -0.054 4.054 25 N -0.190 5.190 26 C -0.011 4.011 27 N -0.129 5.129 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.198 0.802 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.175 0.825 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.746 12.824 -12.818 18.216 hybrid contribution 1.182 -0.253 1.199 1.703 sum -0.564 12.571 -11.619 17.127 Atomic orbital electron populations 1.22657 0.83034 1.02043 0.98770 1.88204 1.17672 1.26652 1.95026 1.22859 0.94964 0.85190 0.99327 1.21694 0.92271 0.98401 0.89578 1.43600 1.58429 1.07751 1.07947 1.18974 1.41911 0.79868 1.05002 0.87971 1.25236 0.95879 0.95162 0.97218 1.69743 1.41325 1.09010 1.29441 0.86998 0.80032 0.80750 0.81940 1.20226 1.21684 1.18777 1.19986 0.80633 0.86466 0.85462 1.90573 1.56584 1.14650 1.85318 1.20118 1.04766 0.94701 0.89811 1.19895 0.87865 0.96882 0.98025 1.26766 1.03854 1.04465 1.02665 1.84526 1.13292 1.32903 1.38161 1.25481 0.94290 0.99748 0.97506 1.18865 0.94234 0.95833 0.98106 1.21601 0.99937 0.93231 0.93999 1.22011 0.94763 1.00238 1.02225 1.22948 0.94997 0.95811 0.91623 1.67804 1.35687 1.04344 1.11210 1.23147 0.87716 0.93823 0.96392 1.66246 1.32678 1.03800 1.10217 0.90116 0.95240 0.94838 0.94103 0.93097 0.90860 0.90099 0.91700 0.87772 0.87371 0.80176 0.84645 0.84224 0.82456 0.81202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.36 -7.82 10.30 -35.23 -0.36 -8.18 16 3 C 0.05 1.12 6.27 37.15 0.23 1.35 16 4 C 0.10 2.34 4.42 -4.04 -0.02 2.32 16 5 N -0.46 -10.95 2.15 -114.81 -0.25 -11.19 16 6 C -0.33 -8.48 8.75 -14.94 -0.13 -8.61 16 7 H 0.10 2.73 7.23 -52.49 -0.38 2.35 16 8 C 0.07 1.90 5.34 -17.47 -0.09 1.80 16 9 N -0.86 -23.76 13.96 55.50 0.77 -22.98 16 10 Si 0.87 20.50 24.82 -169.99 -4.22 16.28 16 11 H -0.28 -6.31 6.70 56.52 0.38 -5.94 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.26 -6.18 7.10 56.52 0.40 -5.77 16 14 C 0.49 11.18 7.57 -10.99 -0.08 11.09 16 15 O -0.59 -14.54 15.06 5.54 0.08 -14.46 16 16 C -0.05 -0.99 4.86 -29.03 -0.14 -1.14 16 17 C 0.11 1.89 5.61 -84.40 -0.47 1.42 16 18 C -0.24 -3.51 11.02 29.15 0.32 -3.19 16 19 S 0.06 0.71 22.49 -107.50 -2.42 -1.71 16 20 C 0.11 1.64 7.36 -14.30 -0.11 1.54 16 21 C -0.06 -0.87 5.89 -104.83 -0.62 -1.49 16 22 C -0.06 -0.61 9.73 -38.88 -0.38 -0.99 16 23 C -0.17 -1.45 10.10 -39.50 -0.40 -1.85 16 24 C 0.10 1.01 11.17 -17.48 -0.20 0.82 16 25 N -0.48 -6.37 10.35 -12.92 -0.13 -6.50 16 26 C 0.15 2.14 10.85 -17.13 -0.19 1.96 16 27 N -0.42 -7.68 9.24 -7.55 -0.07 -7.75 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.71 3.21 -51.93 -0.17 1.55 16 34 H 0.08 1.75 7.54 -51.93 -0.39 1.36 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.10 1.97 7.66 -51.93 -0.40 1.58 16 37 H 0.11 1.92 7.96 -51.93 -0.41 1.50 16 38 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.14 1.12 7.42 -52.49 -0.39 0.73 16 40 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.17 2.63 7.83 -52.49 -0.41 2.22 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -32.55 371.27 -7.24 -39.79 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.09 Total: 4.43 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.15 Total: 6.68 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.32 Total: -48.43 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.28 Total: -22.64 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.22 Total: 16.28 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.42 Total: -1.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.55 -7.24 -39.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629261846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.817 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds