Wall clock time and date at job start Wed Apr 1 2020 04:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00599 * 2 1 4 4 C 1.52993 * 109.47681 * 180.02562 * 3 2 1 5 5 N 1.46510 * 109.46949 * 63.56086 * 4 3 2 6 6 C 1.37094 * 119.99923 * 266.26787 * 5 4 3 7 7 H 1.08001 * 119.99749 * 142.48724 * 6 5 4 8 8 C 1.38947 * 120.00269 * 322.48436 * 6 5 4 9 9 N 1.31418 * 120.00211 * 160.73716 * 8 6 5 10 10 Si 1.86801 * 120.00067 * 340.74142 * 8 6 5 11 11 H 1.48493 * 109.47336 * 95.23612 * 10 8 6 12 12 H 1.48505 * 109.46723 * 215.23631 * 10 8 6 13 13 H 1.48497 * 109.46922 * 335.23382 * 10 8 6 14 14 C 1.34769 * 119.99839 * 86.27087 * 5 4 3 15 15 O 1.21299 * 119.99972 * 359.97438 * 14 5 4 16 16 C 1.50697 * 120.00085 * 179.97438 * 14 5 4 17 17 C 1.50704 * 109.47332 * 179.97438 * 16 14 5 18 18 C 1.33719 * 122.07828 * 125.00523 * 17 16 14 19 19 S 1.76251 * 108.21968 * 179.78144 * 18 17 16 20 20 C 1.76180 * 89.83806 * 0.30295 * 19 18 17 21 21 C 1.47861 * 125.47272 * 179.97438 * 20 19 18 22 22 C 1.39979 * 120.56051 * 359.70030 * 21 20 19 23 23 C 1.38362 * 118.29799 * 179.97438 * 22 21 20 24 24 C 1.38346 * 119.30003 * 359.97438 * 23 22 21 25 25 N 1.31902 * 121.07696 * 0.02562 * 24 23 22 26 26 C 1.31713 * 121.87554 * 359.65478 * 25 24 23 27 27 N 1.30220 * 109.05237 * 359.69601 * 20 19 18 28 28 H 1.08997 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46510 * 299.99972 * 1 2 3 30 30 H 1.09000 * 109.46750 * 59.99877 * 1 2 3 31 31 H 1.08996 * 109.46908 * 59.99682 * 3 2 1 32 32 H 1.09005 * 109.47068 * 300.00326 * 3 2 1 33 33 H 1.09005 * 109.46947 * 303.56581 * 4 3 2 34 34 H 1.08990 * 109.47416 * 183.56186 * 4 3 2 35 35 H 0.96997 * 120.00622 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47106 * 60.00514 * 16 14 5 37 37 H 1.09000 * 109.47397 * 300.00253 * 16 14 5 38 38 H 1.08002 * 125.88373 * 0.02562 * 18 17 16 39 39 H 1.08001 * 120.85055 * 0.02562 * 22 21 20 40 40 H 1.07990 * 120.34880 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.46026 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.71787 * 180.31337 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9733 0.5331 -1.2378 6 6 4.1681 -0.8236 -1.2662 7 1 3.8963 -1.3899 -2.1448 8 6 4.7151 -1.4702 -0.1647 9 7 4.5615 -2.7675 -0.0210 10 14 5.6687 -0.4956 1.1120 11 1 4.7640 -0.1261 2.2301 12 1 6.7867 -1.3229 1.6327 13 1 6.2137 0.7369 0.4883 14 6 4.1845 1.2676 -2.3478 15 8 4.0117 2.4680 -2.3227 16 6 4.6353 0.5977 -3.6202 17 6 4.7967 1.6331 -4.7032 18 6 5.9399 1.7793 -5.3813 19 16 5.7235 3.0781 -6.5529 20 6 4.0702 3.3053 -5.9882 21 6 3.1141 4.3041 -6.5122 22 6 3.4895 5.1784 -7.5389 23 6 2.5575 6.0942 -7.9941 24 6 1.2963 6.1159 -7.4259 25 7 0.9704 5.2796 -6.4594 26 6 1.8204 4.3862 -5.9967 27 7 3.8235 2.4483 -5.0393 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6888 1.8463 0.8899 32 1 1.6888 1.8463 -0.8900 33 1 3.8532 0.5892 0.8555 34 1 3.9788 2.1782 0.0632 35 1 4.9430 -3.2189 0.7481 36 1 3.8905 -0.1363 -3.9279 37 1 5.5889 0.0981 -3.4496 38 1 6.8393 1.1986 -5.2385 39 1 4.4809 5.1387 -7.9653 40 1 2.8116 6.7840 -8.7851 41 1 0.5666 6.8294 -7.7795 42 1 1.5149 3.7150 -5.2076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001629261846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:01 Heat of formation + Delta-G solvation = 1.976706 kcal Electronic energy + Delta-G solvation = -27600.378615 eV Core-core repulsion = 23672.704234 eV Total energy + Delta-G solvation = -3927.674382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42424 -40.93488 -40.04131 -38.56345 -36.62051 -34.52481 -33.91832 -33.19225 -32.09285 -30.86959 -28.94778 -27.26224 -26.68830 -26.28254 -24.65655 -24.26231 -23.04962 -21.04670 -20.36883 -19.40427 -18.41853 -18.21877 -17.92140 -17.55908 -17.12706 -17.03609 -16.85308 -16.37075 -16.11742 -16.01186 -15.44883 -15.39638 -15.15210 -14.73384 -14.54275 -14.40352 -14.20329 -14.08136 -14.00842 -13.62350 -13.40270 -13.14483 -13.00146 -12.76797 -12.56947 -12.48910 -12.29860 -11.95122 -11.68491 -11.33276 -11.06682 -10.86598 -10.64853 -10.59246 -10.40578 -10.33999 -10.18276 -9.70514 -9.24505 -8.41573 -6.02025 -0.82250 0.20239 0.28326 0.42434 0.61680 1.21498 1.32549 1.42538 1.84184 1.93646 2.23406 2.63220 2.82950 2.87247 2.90337 3.16930 3.48073 3.77477 3.85564 3.92822 4.00078 4.10250 4.12571 4.19795 4.28018 4.34407 4.38463 4.51379 4.52552 4.53211 4.61464 4.67483 4.74241 4.76968 4.79642 4.81269 5.00618 5.03863 5.21584 5.46619 5.64746 6.12060 6.28682 6.36645 6.79411 6.93134 7.04350 7.47291 7.83054 8.72999 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.003247 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.484152 B = 8620.177260 C =10063.120825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.061 3.939 4 C 0.095 3.905 5 N -0.467 5.467 6 C -0.322 4.322 7 H 0.080 0.920 8 C 0.035 3.965 9 N -0.898 5.898 10 Si 0.925 3.075 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.482 3.518 15 O -0.605 6.605 16 C -0.045 4.045 17 C 0.072 3.928 18 C -0.241 4.241 19 S 0.139 5.861 20 C 0.088 3.912 21 C -0.087 4.087 22 C -0.057 4.057 23 C -0.153 4.153 24 C 0.102 3.898 25 N -0.510 5.510 26 C 0.126 3.874 27 N -0.465 5.465 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.276 0.724 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.207 0.793 39 H 0.160 0.840 40 H 0.187 0.813 41 H 0.194 0.806 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 14.768 -14.590 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.017 4.017 4 C -0.028 4.028 5 N -0.188 5.188 6 C -0.450 4.450 7 H 0.098 0.902 8 C -0.169 4.169 9 N -0.536 5.536 10 Si 0.752 3.248 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.189 1.189 14 C 0.272 3.728 15 O -0.490 6.490 16 C -0.087 4.087 17 C -0.060 4.060 18 C -0.379 4.379 19 S 0.396 5.604 20 C -0.188 4.188 21 C -0.093 4.093 22 C -0.084 4.084 23 C -0.172 4.172 24 C -0.056 4.056 25 N -0.219 5.219 26 C -0.034 4.034 27 N -0.178 5.178 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.138 0.862 38 H 0.224 0.776 39 H 0.178 0.822 40 H 0.204 0.796 41 H 0.211 0.789 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.768 15.458 -14.609 21.283 hybrid contribution 0.792 -0.919 1.567 1.982 sum 0.024 14.538 -13.042 19.531 Atomic orbital electron populations 1.22863 0.80530 1.03195 1.00313 1.88132 1.20571 1.27466 1.95328 1.22777 0.93582 0.85061 1.00283 1.21815 0.93978 0.98246 0.88737 1.43705 1.59088 1.07212 1.08830 1.18797 1.41354 0.80519 1.04285 0.90190 1.25731 0.96497 0.95755 0.98907 1.69816 1.42833 1.10328 1.30585 0.86183 0.79019 0.79424 0.80199 1.19274 1.21183 1.18932 1.20608 0.79620 0.86369 0.86183 1.90544 1.57110 1.15590 1.85754 1.20003 1.04792 0.95071 0.88806 1.19733 0.89360 0.97818 0.99132 1.27157 1.03603 1.04936 1.02250 1.84084 1.10053 1.30512 1.35760 1.25888 0.96400 0.99390 0.97085 1.18973 0.93687 0.96867 0.99748 1.21936 1.01421 0.92420 0.92662 1.22503 0.93316 0.99423 1.01931 1.23652 0.96621 0.95093 0.90216 1.67755 1.36118 1.05112 1.12876 1.22773 0.88895 0.94739 0.96998 1.66182 1.34061 1.05280 1.12291 0.89261 0.92567 0.94302 0.90756 0.94325 0.91539 0.89592 0.91405 0.88623 0.86208 0.77642 0.82248 0.79585 0.78946 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.40 -17.48 10.30 -148.98 -1.53 -19.01 16 3 C 0.06 2.49 6.27 71.98 0.45 2.94 16 4 C 0.10 4.33 4.42 86.38 0.38 4.71 16 5 N -0.47 -22.98 2.15 -635.55 -1.37 -24.35 16 6 C -0.32 -17.06 8.75 84.04 0.73 -16.32 16 7 H 0.08 4.51 7.23 -2.91 -0.02 4.49 16 8 C 0.03 1.86 5.34 84.92 0.45 2.32 16 9 N -0.90 -50.70 13.96 21.66 0.30 -50.40 16 10 Si 0.92 42.48 24.82 68.60 1.70 44.18 16 11 H -0.27 -11.76 6.70 99.48 0.67 -11.09 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.26 -12.11 7.10 99.48 0.71 -11.41 16 14 C 0.48 22.95 7.57 87.66 0.66 23.62 16 15 O -0.60 -30.92 15.06 -3.09 -0.05 -30.97 16 16 C -0.04 -1.79 4.86 29.10 0.14 -1.65 16 17 C 0.07 2.63 5.61 41.61 0.23 2.86 16 18 C -0.24 -6.79 11.02 66.79 0.74 -6.06 16 19 S 0.14 3.24 22.49 -56.49 -1.27 1.97 16 20 C 0.09 2.72 7.36 87.48 0.64 3.37 16 21 C -0.09 -2.33 5.89 -20.00 -0.12 -2.45 16 22 C -0.06 -1.00 9.73 22.72 0.22 -0.78 16 23 C -0.15 -1.95 10.10 22.32 0.23 -1.72 16 24 C 0.10 1.71 11.17 84.71 0.95 2.66 16 25 N -0.51 -13.44 10.35 -194.77 -2.02 -15.45 16 26 C 0.13 3.79 10.85 85.02 0.92 4.71 16 27 N -0.46 -17.81 9.24 -177.80 -1.64 -19.45 16 28 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.07 3.09 3.21 -2.38 -0.01 3.09 16 34 H 0.09 3.75 7.54 -2.39 -0.02 3.73 16 35 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.10 3.90 7.66 -2.39 -0.02 3.88 16 37 H 0.12 4.37 7.96 -2.39 -0.02 4.36 16 38 H 0.21 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.16 1.96 7.42 -2.91 -0.02 1.94 16 40 H 0.19 0.68 8.06 -2.92 -0.02 0.66 16 41 H 0.19 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.14 4.86 7.83 -2.91 -0.02 4.84 16 Total: -1.00 -74.22 371.27 3.03 -71.19 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 1.01 Total: 21.93 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 7.89 Total: 20.35 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.72 Total: -109.64 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -1.58 Total: -49.99 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.70 Total: 44.18 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.27 Total: 1.97 kcal Total: -74.22 3.03 -71.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629261846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.165 kcal (2) G-P(sol) polarization free energy of solvation -74.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds