Wall clock time and date at job start Wed Apr 1 2020 04:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35038 * 126.40100 * 2 1 4 4 N 1.30500 * 108.70354 * 180.26418 * 3 2 1 5 5 C 1.34136 * 109.25172 * 359.77233 * 4 3 2 6 6 C 1.34662 * 108.02302 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.59371 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47217 * 205.02847 * 7 6 5 9 9 C 1.52993 * 109.47237 * 85.02320 * 7 6 5 10 10 O 1.42899 * 109.47236 * 305.00534 * 9 7 6 11 11 N 1.46500 * 109.46664 * 325.02311 * 7 6 5 12 12 C 1.34774 * 119.99987 * 204.99668 * 11 7 6 13 13 O 1.21610 * 120.00051 * 0.02562 * 12 11 7 14 14 C 1.47428 * 120.00226 * 180.02562 * 12 11 7 15 15 C 1.39683 * 120.21581 * 0.02562 * 14 12 11 16 16 C 1.37805 * 119.93877 * 179.97438 * 15 14 12 17 17 C 1.38660 * 120.38249 * 0.02562 * 16 15 14 18 18 C 1.37912 * 120.43894 * 359.97438 * 17 16 15 19 19 C 1.39110 * 120.04701 * 0.02562 * 18 17 16 20 20 S 1.76205 * 120.18652 * 179.97438 * 19 18 17 21 21 C 1.76204 * 99.99978 * 6.70559 * 20 19 18 22 22 H 1.08001 * 119.99781 * 5.63016 * 21 20 19 23 23 C 1.38799 * 120.00250 * 185.63520 * 21 20 19 24 24 N 1.31558 * 119.99925 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00311 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47158 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47406 * 119.99810 * 25 23 21 28 28 H 1.48504 * 109.46972 * 239.99608 * 25 23 21 29 29 H 1.08994 * 109.47478 * 270.12055 * 1 2 3 30 30 H 1.09002 * 109.46706 * 30.12004 * 1 2 3 31 31 H 1.09003 * 109.47206 * 150.11788 * 1 2 3 32 32 H 1.08004 * 125.64791 * 359.97438 * 3 2 1 33 33 H 1.08000 * 125.98644 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46888 * 65.00423 * 9 7 6 35 35 H 1.09000 * 109.46975 * 185.00232 * 9 7 6 36 36 H 0.96703 * 113.99549 * 180.02562 * 10 9 7 37 37 H 0.96996 * 120.00190 * 25.00423 * 11 7 6 38 38 H 1.07999 * 120.02669 * 359.96210 * 15 14 12 39 39 H 1.07997 * 119.80336 * 180.02562 * 16 15 14 40 40 H 1.07994 * 119.77636 * 179.97438 * 17 16 15 41 41 H 1.07993 * 119.97091 * 179.74187 * 18 17 16 42 42 H 0.97003 * 120.00194 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 -0.0057 5 6 3.5460 -0.6507 -0.0045 6 6 2.2772 -1.1019 0.0028 7 6 1.8362 -2.5429 0.0062 8 1 0.8371 -2.6181 -0.4231 9 6 1.8146 -3.0663 1.4436 10 8 3.0945 -2.8607 2.0448 11 7 2.7712 -3.3415 -0.7903 12 6 2.3617 -4.4954 -1.3535 13 8 1.2160 -4.8734 -1.2010 14 6 3.3027 -5.2993 -2.1546 15 6 4.6199 -4.8696 -2.3323 16 6 5.4948 -5.6258 -3.0817 17 6 5.0757 -6.8131 -3.6626 18 6 3.7788 -7.2521 -3.4973 19 6 2.8804 -6.5030 -2.7444 20 16 1.2224 -7.0601 -2.5314 21 6 1.3341 -8.6486 -3.2857 22 1 2.2909 -9.0213 -3.6205 23 6 0.1925 -9.4208 -3.4498 24 7 -0.9729 -8.9669 -3.0417 25 14 0.3110 -11.1051 -4.2489 26 1 1.7233 -11.3806 -4.6158 27 1 -0.1641 -12.1398 -3.2955 28 1 -0.5322 -11.1336 -5.4710 29 1 -0.3634 0.0022 1.0276 30 1 -0.3633 0.8889 -0.5157 31 1 -0.3634 -0.8911 -0.5120 32 1 1.9335 2.1144 -0.0004 33 1 4.4367 -1.2613 -0.0078 34 1 1.0552 -2.5310 2.0137 35 1 1.5821 -4.1312 1.4391 36 1 3.1538 -3.1699 2.9591 37 1 3.6850 -3.0398 -0.9122 38 1 4.9522 -3.9455 -1.8829 39 1 6.5128 -5.2918 -3.2173 40 1 5.7695 -7.3978 -4.2483 41 1 3.4593 -8.1758 -3.9566 42 1 -1.7707 -9.5067 -3.1560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646266252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:33 Heat of formation + Delta-G solvation = 16.149091 kcal Electronic energy + Delta-G solvation = -27577.896255 eV Core-core repulsion = 23650.836434 eV Total energy + Delta-G solvation = -3927.059821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.26008 -39.62857 -37.74944 -36.81142 -34.55255 -34.17076 -32.77251 -31.41250 -30.27812 -29.73254 -27.88275 -27.16804 -25.84287 -23.96220 -22.69046 -21.91722 -21.63108 -20.10329 -19.75908 -18.38594 -17.60167 -17.37784 -16.84105 -16.07877 -15.82189 -15.67197 -15.19826 -14.96723 -14.58489 -14.50617 -14.07210 -13.88875 -13.79259 -13.62376 -13.37128 -13.10530 -13.04600 -12.96563 -12.74821 -12.45241 -11.93272 -11.71274 -11.58925 -11.23407 -11.21075 -10.92833 -10.33703 -10.20401 -9.99360 -9.82750 -9.71898 -9.68510 -9.52793 -8.93645 -8.74038 -8.45218 -8.33612 -8.09729 -6.55104 -6.48624 -4.18733 1.51254 1.87519 2.02646 2.53406 3.08966 3.09230 3.10472 3.18833 3.39352 3.44994 3.49620 4.04500 4.15185 4.37751 4.47660 4.48776 4.59214 4.81897 4.92789 5.03394 5.10653 5.11795 5.14770 5.22305 5.31128 5.38163 5.50279 5.61000 5.62766 5.71971 5.95086 6.11523 6.19787 6.38463 6.58607 6.61812 6.66713 6.85699 7.01906 7.04273 7.13359 7.43570 7.54906 7.58736 7.84830 7.96764 8.14848 8.70329 8.98286 10.54772 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.002985 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.579203 B = 9377.432033 C =10459.801568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.457 5.457 3 C 0.179 3.821 4 N -0.494 5.494 5 C 0.002 3.998 6 C -0.025 4.025 7 C 0.232 3.768 8 H 0.104 0.896 9 C 0.071 3.929 10 O -0.561 6.561 11 N -0.720 5.720 12 C 0.557 3.443 13 O -0.513 6.513 14 C -0.177 4.177 15 C -0.058 4.058 16 C -0.185 4.185 17 C -0.075 4.075 18 C -0.154 4.154 19 C -0.055 4.055 20 S 0.181 5.819 21 C -0.594 4.594 22 H 0.091 0.909 23 C 0.083 3.917 24 N -0.859 5.859 25 Si 0.919 3.081 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.277 1.277 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.204 0.796 33 H 0.167 0.833 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.376 0.624 37 H 0.400 0.600 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 15.468 7.180 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.140 5.140 3 C -0.103 4.103 4 N -0.212 5.212 5 C -0.146 4.146 6 C -0.140 4.140 7 C 0.125 3.875 8 H 0.122 0.878 9 C -0.009 4.009 10 O -0.366 6.366 11 N -0.375 5.375 12 C 0.347 3.653 13 O -0.391 6.391 14 C -0.192 4.192 15 C -0.079 4.079 16 C -0.210 4.210 17 C -0.098 4.098 18 C -0.179 4.179 19 C -0.175 4.175 20 S 0.445 5.555 21 C -0.741 4.741 22 H 0.109 0.891 23 C -0.128 4.128 24 N -0.492 5.492 25 Si 0.744 3.256 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.202 1.202 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.221 0.779 33 H 0.184 0.816 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.223 0.777 37 H 0.237 0.763 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.959 16.265 7.230 18.044 hybrid contribution 0.697 -2.138 -0.586 2.324 sum 3.655 14.127 6.644 16.034 Atomic orbital electron populations 1.22115 0.76602 1.05141 1.03748 1.45217 1.07556 1.06475 1.54801 1.24911 0.85704 0.93255 1.06445 1.70292 1.19314 1.12001 1.19618 1.21888 0.95631 0.90700 1.06388 1.20969 0.91656 0.89043 1.12326 1.18935 0.94909 0.83317 0.90330 0.87846 1.22556 0.85377 1.00259 0.92685 1.86499 1.32656 1.85942 1.31468 1.45709 1.14684 1.23281 1.53849 1.18329 0.87733 0.80240 0.78989 1.90774 1.18914 1.68785 1.60600 1.19025 0.94373 0.98148 1.07653 1.20928 0.92299 0.97941 0.96688 1.20656 0.99274 0.97268 1.03756 1.21101 0.95535 0.95594 0.97528 1.21434 0.93327 1.01654 1.01488 1.23067 1.03316 0.95107 0.95961 1.84678 0.97809 1.12570 1.60452 1.24092 0.97792 1.04924 1.47247 0.89084 1.25092 0.94214 0.99203 0.94251 1.69983 0.98888 1.37823 1.42476 0.86102 0.78856 0.81610 0.78995 1.19128 1.20243 1.20250 0.90367 0.89177 0.89276 0.77934 0.81575 0.93550 0.91776 0.77709 0.76331 0.87046 0.86958 0.86979 0.84354 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.00 59.85 0.66 1.07 16 2 N -0.46 -4.56 3.15 -121.37 -0.38 -4.94 16 3 C 0.18 1.83 12.56 -90.38 -1.14 0.70 16 4 N -0.49 -6.59 11.25 -14.66 -0.17 -6.76 16 5 C 0.00 0.03 10.58 -17.81 -0.19 -0.16 16 6 C -0.03 -0.31 5.67 -81.60 -0.46 -0.77 16 7 C 0.23 2.99 2.67 -69.09 -0.18 2.81 16 8 H 0.10 1.40 6.52 -51.93 -0.34 1.06 16 9 C 0.07 0.83 6.84 37.15 0.25 1.08 16 10 O -0.56 -6.23 12.72 -35.23 -0.45 -6.67 16 11 N -0.72 -10.50 4.95 -56.01 -0.28 -10.78 16 12 C 0.56 10.49 7.71 -12.52 -0.10 10.39 16 13 O -0.51 -11.30 13.43 5.27 0.07 -11.23 16 14 C -0.18 -3.46 5.89 -104.75 -0.62 -4.08 16 15 C -0.06 -0.94 9.53 -39.20 -0.37 -1.31 16 16 C -0.19 -2.88 10.02 -39.58 -0.40 -3.27 16 17 C -0.08 -1.29 10.03 -39.55 -0.40 -1.68 16 18 C -0.15 -3.20 9.22 -39.38 -0.36 -3.56 16 19 C -0.05 -1.23 6.15 -38.39 -0.24 -1.47 16 20 S 0.18 4.74 18.56 -107.50 -2.00 2.75 16 21 C -0.59 -16.16 9.00 30.94 0.28 -15.88 16 22 H 0.09 2.36 4.98 -52.49 -0.26 2.10 16 23 C 0.08 2.25 5.49 -17.46 -0.10 2.15 16 24 N -0.86 -24.35 13.22 55.49 0.73 -23.62 16 25 Si 0.92 20.46 29.55 -169.99 -5.02 15.44 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.60 7.11 -51.93 -0.37 0.23 16 32 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.17 2.03 7.46 -52.49 -0.39 1.64 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.38 2.68 9.12 45.56 0.42 3.10 16 37 H 0.40 5.19 5.42 -40.82 -0.22 4.97 16 38 H 0.11 1.42 6.40 -52.49 -0.34 1.08 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.14 2.99 5.03 -52.49 -0.26 2.73 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -34.75 367.63 -9.16 -43.92 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.86 Total: 10.35 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.36 Total: -13.98 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.09 Total: -46.10 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.38 Total: -17.91 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -2.00 Total: 2.75 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.75 -9.16 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646266252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.067 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds