Wall clock time and date at job start Wed Apr 1 2020 04:09:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.35038 * 126.40100 * 2 1
4 4 N 1.30500 * 108.70354 * 180.26418 * 3 2 1
5 5 C 1.34136 * 109.25172 * 359.77233 * 4 3 2
6 6 C 1.34662 * 108.02302 * 359.97438 * 5 4 3
7 7 C 1.50699 * 126.59371 * 179.97438 * 6 5 4
8 8 H 1.09003 * 109.47217 * 205.02847 * 7 6 5
9 9 C 1.52993 * 109.47237 * 85.02320 * 7 6 5
10 10 O 1.42899 * 109.47236 * 305.00534 * 9 7 6
11 11 N 1.46500 * 109.46664 * 325.02311 * 7 6 5
12 12 C 1.34774 * 119.99987 * 204.99668 * 11 7 6
13 13 O 1.21610 * 120.00051 * 0.02562 * 12 11 7
14 14 C 1.47428 * 120.00226 * 180.02562 * 12 11 7
15 15 C 1.39683 * 120.21581 * 0.02562 * 14 12 11
16 16 C 1.37805 * 119.93877 * 179.97438 * 15 14 12
17 17 C 1.38660 * 120.38249 * 0.02562 * 16 15 14
18 18 C 1.37912 * 120.43894 * 359.97438 * 17 16 15
19 19 C 1.39110 * 120.04701 * 0.02562 * 18 17 16
20 20 S 1.76205 * 120.18652 * 179.97438 * 19 18 17
21 21 C 1.76204 * 99.99978 * 6.70559 * 20 19 18
22 22 H 1.08001 * 119.99781 * 5.63016 * 21 20 19
23 23 C 1.38799 * 120.00250 * 185.63520 * 21 20 19
24 24 N 1.31558 * 119.99925 * 359.97438 * 23 21 20
25 25 Si 1.86797 * 120.00311 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.47158 * 359.97438 * 25 23 21
27 27 H 1.48499 * 109.47406 * 119.99810 * 25 23 21
28 28 H 1.48504 * 109.46972 * 239.99608 * 25 23 21
29 29 H 1.08994 * 109.47478 * 270.12055 * 1 2 3
30 30 H 1.09002 * 109.46706 * 30.12004 * 1 2 3
31 31 H 1.09003 * 109.47206 * 150.11788 * 1 2 3
32 32 H 1.08004 * 125.64791 * 359.97438 * 3 2 1
33 33 H 1.08000 * 125.98644 * 180.02562 * 5 4 3
34 34 H 1.09005 * 109.46888 * 65.00423 * 9 7 6
35 35 H 1.09000 * 109.46975 * 185.00232 * 9 7 6
36 36 H 0.96703 * 113.99549 * 180.02562 * 10 9 7
37 37 H 0.96996 * 120.00190 * 25.00423 * 11 7 6
38 38 H 1.07999 * 120.02669 * 359.96210 * 15 14 12
39 39 H 1.07997 * 119.80336 * 180.02562 * 16 15 14
40 40 H 1.07994 * 119.77636 * 179.97438 * 17 16 15
41 41 H 1.07993 * 119.97091 * 179.74187 * 18 17 16
42 42 H 0.97003 * 120.00194 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2663 1.0869 0.0000
4 7 3.5096 0.6902 -0.0057
5 6 3.5460 -0.6507 -0.0045
6 6 2.2772 -1.1019 0.0028
7 6 1.8362 -2.5429 0.0062
8 1 0.8371 -2.6181 -0.4231
9 6 1.8146 -3.0663 1.4436
10 8 3.0945 -2.8607 2.0448
11 7 2.7712 -3.3415 -0.7903
12 6 2.3617 -4.4954 -1.3535
13 8 1.2160 -4.8734 -1.2010
14 6 3.3027 -5.2993 -2.1546
15 6 4.6199 -4.8696 -2.3323
16 6 5.4948 -5.6258 -3.0817
17 6 5.0757 -6.8131 -3.6626
18 6 3.7788 -7.2521 -3.4973
19 6 2.8804 -6.5030 -2.7444
20 16 1.2224 -7.0601 -2.5314
21 6 1.3341 -8.6486 -3.2857
22 1 2.2909 -9.0213 -3.6205
23 6 0.1925 -9.4208 -3.4498
24 7 -0.9729 -8.9669 -3.0417
25 14 0.3110 -11.1051 -4.2489
26 1 1.7233 -11.3806 -4.6158
27 1 -0.1641 -12.1398 -3.2955
28 1 -0.5322 -11.1336 -5.4710
29 1 -0.3634 0.0022 1.0276
30 1 -0.3633 0.8889 -0.5157
31 1 -0.3634 -0.8911 -0.5120
32 1 1.9335 2.1144 -0.0004
33 1 4.4367 -1.2613 -0.0078
34 1 1.0552 -2.5310 2.0137
35 1 1.5821 -4.1312 1.4391
36 1 3.1538 -3.1699 2.9591
37 1 3.6850 -3.0398 -0.9122
38 1 4.9522 -3.9455 -1.8829
39 1 6.5128 -5.2918 -3.2173
40 1 5.7695 -7.3978 -4.2483
41 1 3.4593 -8.1758 -3.9566
42 1 -1.7707 -9.5067 -3.1560
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001646266252.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:09:33
Heat of formation + Delta-G solvation = 16.149091 kcal
Electronic energy + Delta-G solvation = -27577.896255 eV
Core-core repulsion = 23650.836434 eV
Total energy + Delta-G solvation = -3927.059821 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.26008 -39.62857 -37.74944 -36.81142 -34.55255 -34.17076 -32.77251 -31.41250
-30.27812 -29.73254 -27.88275 -27.16804 -25.84287 -23.96220 -22.69046 -21.91722
-21.63108 -20.10329 -19.75908 -18.38594 -17.60167 -17.37784 -16.84105 -16.07877
-15.82189 -15.67197 -15.19826 -14.96723 -14.58489 -14.50617 -14.07210 -13.88875
-13.79259 -13.62376 -13.37128 -13.10530 -13.04600 -12.96563 -12.74821 -12.45241
-11.93272 -11.71274 -11.58925 -11.23407 -11.21075 -10.92833 -10.33703 -10.20401
-9.99360 -9.82750 -9.71898 -9.68510 -9.52793 -8.93645 -8.74038 -8.45218
-8.33612 -8.09729 -6.55104 -6.48624 -4.18733 1.51254 1.87519 2.02646
2.53406 3.08966 3.09230 3.10472 3.18833 3.39352 3.44994 3.49620
4.04500 4.15185 4.37751 4.47660 4.48776 4.59214 4.81897 4.92789
5.03394 5.10653 5.11795 5.14770 5.22305 5.31128 5.38163 5.50279
5.61000 5.62766 5.71971 5.95086 6.11523 6.19787 6.38463 6.58607
6.61812 6.66713 6.85699 7.01906 7.04273 7.13359 7.43570 7.54906
7.58736 7.84830 7.96764 8.14848 8.70329 8.98286 10.54772
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.015127 B = 0.002985 C = 0.002676
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1850.579203 B = 9377.432033 C =10459.801568
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.067 3.933
2 N -0.457 5.457
3 C 0.179 3.821
4 N -0.494 5.494
5 C 0.002 3.998
6 C -0.025 4.025
7 C 0.232 3.768
8 H 0.104 0.896
9 C 0.071 3.929
10 O -0.561 6.561
11 N -0.720 5.720
12 C 0.557 3.443
13 O -0.513 6.513
14 C -0.177 4.177
15 C -0.058 4.058
16 C -0.185 4.185
17 C -0.075 4.075
18 C -0.154 4.154
19 C -0.055 4.055
20 S 0.181 5.819
21 C -0.594 4.594
22 H 0.091 0.909
23 C 0.083 3.917
24 N -0.859 5.859
25 Si 0.919 3.081
26 H -0.267 1.267
27 H -0.277 1.277
28 H -0.277 1.277
29 H 0.078 0.922
30 H 0.090 0.910
31 H 0.089 0.911
32 H 0.204 0.796
33 H 0.167 0.833
34 H 0.046 0.954
35 H 0.064 0.936
36 H 0.376 0.624
37 H 0.400 0.600
38 H 0.112 0.888
39 H 0.112 0.888
40 H 0.112 0.888
41 H 0.139 0.861
42 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.711 15.468 7.180 17.692
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 N -0.140 5.140
3 C -0.103 4.103
4 N -0.212 5.212
5 C -0.146 4.146
6 C -0.140 4.140
7 C 0.125 3.875
8 H 0.122 0.878
9 C -0.009 4.009
10 O -0.366 6.366
11 N -0.375 5.375
12 C 0.347 3.653
13 O -0.391 6.391
14 C -0.192 4.192
15 C -0.079 4.079
16 C -0.210 4.210
17 C -0.098 4.098
18 C -0.179 4.179
19 C -0.175 4.175
20 S 0.445 5.555
21 C -0.741 4.741
22 H 0.109 0.891
23 C -0.128 4.128
24 N -0.492 5.492
25 Si 0.744 3.256
26 H -0.191 1.191
27 H -0.202 1.202
28 H -0.202 1.202
29 H 0.096 0.904
30 H 0.108 0.892
31 H 0.107 0.893
32 H 0.221 0.779
33 H 0.184 0.816
34 H 0.064 0.936
35 H 0.082 0.918
36 H 0.223 0.777
37 H 0.237 0.763
38 H 0.130 0.870
39 H 0.130 0.870
40 H 0.130 0.870
41 H 0.156 0.844
42 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 2.959 16.265 7.230 18.044
hybrid contribution 0.697 -2.138 -0.586 2.324
sum 3.655 14.127 6.644 16.034
Atomic orbital electron populations
1.22115 0.76602 1.05141 1.03748 1.45217 1.07556 1.06475 1.54801
1.24911 0.85704 0.93255 1.06445 1.70292 1.19314 1.12001 1.19618
1.21888 0.95631 0.90700 1.06388 1.20969 0.91656 0.89043 1.12326
1.18935 0.94909 0.83317 0.90330 0.87846 1.22556 0.85377 1.00259
0.92685 1.86499 1.32656 1.85942 1.31468 1.45709 1.14684 1.23281
1.53849 1.18329 0.87733 0.80240 0.78989 1.90774 1.18914 1.68785
1.60600 1.19025 0.94373 0.98148 1.07653 1.20928 0.92299 0.97941
0.96688 1.20656 0.99274 0.97268 1.03756 1.21101 0.95535 0.95594
0.97528 1.21434 0.93327 1.01654 1.01488 1.23067 1.03316 0.95107
0.95961 1.84678 0.97809 1.12570 1.60452 1.24092 0.97792 1.04924
1.47247 0.89084 1.25092 0.94214 0.99203 0.94251 1.69983 0.98888
1.37823 1.42476 0.86102 0.78856 0.81610 0.78995 1.19128 1.20243
1.20250 0.90367 0.89177 0.89276 0.77934 0.81575 0.93550 0.91776
0.77709 0.76331 0.87046 0.86958 0.86979 0.84354 0.91626
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.41 11.00 59.85 0.66 1.07 16
2 N -0.46 -4.56 3.15 -121.37 -0.38 -4.94 16
3 C 0.18 1.83 12.56 -90.38 -1.14 0.70 16
4 N -0.49 -6.59 11.25 -14.66 -0.17 -6.76 16
5 C 0.00 0.03 10.58 -17.81 -0.19 -0.16 16
6 C -0.03 -0.31 5.67 -81.60 -0.46 -0.77 16
7 C 0.23 2.99 2.67 -69.09 -0.18 2.81 16
8 H 0.10 1.40 6.52 -51.93 -0.34 1.06 16
9 C 0.07 0.83 6.84 37.15 0.25 1.08 16
10 O -0.56 -6.23 12.72 -35.23 -0.45 -6.67 16
11 N -0.72 -10.50 4.95 -56.01 -0.28 -10.78 16
12 C 0.56 10.49 7.71 -12.52 -0.10 10.39 16
13 O -0.51 -11.30 13.43 5.27 0.07 -11.23 16
14 C -0.18 -3.46 5.89 -104.75 -0.62 -4.08 16
15 C -0.06 -0.94 9.53 -39.20 -0.37 -1.31 16
16 C -0.19 -2.88 10.02 -39.58 -0.40 -3.27 16
17 C -0.08 -1.29 10.03 -39.55 -0.40 -1.68 16
18 C -0.15 -3.20 9.22 -39.38 -0.36 -3.56 16
19 C -0.05 -1.23 6.15 -38.39 -0.24 -1.47 16
20 S 0.18 4.74 18.56 -107.50 -2.00 2.75 16
21 C -0.59 -16.16 9.00 30.94 0.28 -15.88 16
22 H 0.09 2.36 4.98 -52.49 -0.26 2.10 16
23 C 0.08 2.25 5.49 -17.46 -0.10 2.15 16
24 N -0.86 -24.35 13.22 55.49 0.73 -23.62 16
25 Si 0.92 20.46 29.55 -169.99 -5.02 15.44 16
26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.09 0.60 7.11 -51.93 -0.37 0.23 16
32 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16
33 H 0.17 2.03 7.46 -52.49 -0.39 1.64 16
34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
36 H 0.38 2.68 9.12 45.56 0.42 3.10 16
37 H 0.40 5.19 5.42 -40.82 -0.22 4.97 16
38 H 0.11 1.42 6.40 -52.49 -0.34 1.08 16
39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16
40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16
41 H 0.14 2.99 5.03 -52.49 -0.26 2.73 16
42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16
LS Contribution 367.63 15.07 5.54 5.54
Total: -1.00 -34.75 367.63 -9.16 -43.92
By element:
Atomic # 1 Polarization: 14.21 SS G_CDS: -3.86 Total: 10.35 kcal
Atomic # 6 Polarization: -10.63 SS G_CDS: -3.36 Total: -13.98 kcal
Atomic # 7 Polarization: -46.01 SS G_CDS: -0.09 Total: -46.10 kcal
Atomic # 8 Polarization: -17.53 SS G_CDS: -0.38 Total: -17.91 kcal
Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal
Atomic # 16 Polarization: 4.74 SS G_CDS: -2.00 Total: 2.75 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -34.75 -9.16 -43.92 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001646266252.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.067 kcal
(2) G-P(sol) polarization free energy of solvation -34.753 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.314 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.149 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds