Wall clock time and date at job start Wed Apr 1 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00222 * 2 1 4 4 C 1.50703 * 112.94539 * 295.52387 * 3 2 1 5 5 N 1.30497 * 125.65478 * 122.46339 * 4 3 2 6 6 C 1.34122 * 109.25976 * 180.29045 * 5 4 3 7 7 C 1.34678 * 108.01739 * 359.73005 * 6 5 4 8 8 N 1.35048 * 125.64670 * 302.29009 * 4 3 2 9 9 C 1.46498 * 126.39613 * 359.97438 * 8 4 3 10 10 C 1.53945 * 113.74027 * 67.11304 * 3 2 1 11 11 N 1.47806 * 86.03870 * 90.88149 * 10 3 2 12 12 C 1.34777 * 134.46012 * 204.63837 * 11 10 3 13 13 O 1.21760 * 119.99945 * 179.86763 * 12 11 10 14 14 C 1.46237 * 119.99929 * 359.87406 * 12 11 10 15 15 S 1.75666 * 125.22709 * 0.02562 * 14 12 11 16 16 C 1.75468 * 92.09204 * 180.02562 * 15 14 12 17 17 C 1.32764 * 111.36665 * 0.02562 * 16 15 14 18 18 C 1.39546 * 125.22791 * 179.71749 * 14 12 11 19 19 C 1.40536 * 123.71609 * 359.97438 * 18 14 12 20 20 H 1.08000 * 119.99644 * 23.59259 * 19 18 14 21 21 C 1.40307 * 119.99877 * 203.59876 * 19 18 14 22 22 N 1.30637 * 120.00373 * 9.84812 * 21 19 18 23 23 Si 1.86798 * 119.99661 * 189.85155 * 21 19 18 24 24 H 1.48509 * 109.47408 * 59.99952 * 23 21 19 25 25 H 1.48500 * 109.47067 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47467 * 299.99645 * 23 21 19 27 27 C 1.47589 * 91.04888 * 24.54927 * 11 10 3 28 28 H 1.09000 * 109.47186 * 175.19121 * 1 2 3 29 29 H 1.08998 * 109.47025 * 295.18919 * 1 2 3 30 30 H 1.09004 * 109.46861 * 55.18854 * 1 2 3 31 31 H 1.07997 * 125.99632 * 179.72664 * 6 5 4 32 32 H 1.08000 * 126.58761 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47483 * 265.33741 * 9 8 4 34 34 H 1.09006 * 109.47068 * 145.34065 * 9 8 4 35 35 H 1.09001 * 109.47241 * 25.34046 * 9 8 4 36 36 H 1.09003 * 113.76700 * 205.14723 * 10 3 2 37 37 H 1.09003 * 113.77133 * 336.54339 * 10 3 2 38 38 H 1.08007 * 124.32147 * 179.97438 * 16 15 14 39 39 H 1.07994 * 122.79402 * 179.97438 * 17 16 15 40 40 H 0.96991 * 120.00404 * 180.02562 * 22 21 19 41 41 H 1.08997 * 113.76754 * 221.15020 * 27 11 10 42 42 H 1.08998 * 113.87130 * 89.76789 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7030 2.0854 -1.2523 5 7 1.1109 3.2474 -1.2987 6 6 0.9989 3.6360 -2.5775 7 6 1.5476 2.6812 -3.3527 8 7 1.9978 1.6990 -2.5124 9 6 2.6684 0.4576 -2.9065 10 6 1.7617 2.0945 1.2982 11 7 3.0308 1.5072 1.7771 12 6 3.5502 1.2452 2.9928 13 8 4.6535 0.7387 3.0872 14 6 2.7888 1.5691 4.1986 15 16 1.1909 2.2985 4.2225 16 6 1.1416 2.2872 5.9765 17 6 2.2523 1.7705 6.4883 18 6 3.2173 1.3407 5.5068 19 6 4.4553 0.7604 5.8321 20 1 5.2755 0.8096 5.1312 21 6 4.6256 0.1170 7.0673 22 7 3.5917 -0.1131 7.8319 23 14 6.3307 -0.4103 7.6184 24 1 7.2120 0.7815 7.7101 25 1 6.2410 -1.0626 8.9494 26 1 6.8948 -1.3685 6.6341 27 6 3.4994 1.3208 0.3901 28 1 -0.3633 -1.0240 -0.0861 29 1 -0.3633 0.4374 0.9299 30 1 -0.3633 0.5867 -0.8438 31 1 0.5477 4.5538 -2.9248 32 1 1.6191 2.6892 -4.4303 33 1 3.7373 0.6410 -3.0159 34 1 2.2605 0.1099 -3.8557 35 1 2.5064 -0.3016 -2.1414 36 1 1.7995 3.1762 1.1689 37 1 0.8850 1.7616 1.8538 38 1 0.3136 2.6544 6.5648 39 1 2.4173 1.6751 7.5513 40 1 3.7094 -0.5575 8.6860 41 1 4.0075 0.3713 0.2219 42 1 4.0491 2.1737 -0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646984629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:44 Heat of formation + Delta-G solvation = 59.800797 kcal Electronic energy + Delta-G solvation = -28292.014442 eV Core-core repulsion = 24366.847501 eV Total energy + Delta-G solvation = -3925.166941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.33484 -39.85659 -37.54140 -36.16229 -35.30269 -34.11247 -33.02616 -30.59447 -29.11237 -28.19998 -27.14850 -26.82980 -26.15524 -25.27208 -22.89090 -21.68432 -21.35349 -19.65415 -19.28021 -18.59244 -17.73716 -17.03952 -16.26778 -15.94734 -15.78623 -15.51657 -15.27310 -14.94854 -14.50238 -14.35432 -14.15942 -13.81741 -13.62119 -13.36560 -13.06743 -12.82788 -12.57586 -12.42146 -12.33293 -12.18563 -11.90417 -11.80447 -11.48647 -11.39481 -11.12769 -10.92403 -10.75714 -10.38882 -10.12794 -10.09019 -9.88977 -9.72853 -9.53148 -9.12804 -8.59956 -8.42517 -8.00387 -7.45364 -7.09694 -7.01681 -4.49657 1.84642 2.19622 2.60486 2.98377 3.00082 3.02275 3.05825 3.18673 3.40711 3.48126 3.68514 3.82546 3.88101 4.17360 4.41019 4.51903 4.59597 4.77424 4.94569 5.11288 5.23130 5.28621 5.30068 5.36312 5.42256 5.55107 5.62225 5.63124 5.68557 5.89124 5.99517 6.06578 6.11430 6.17119 6.61384 6.82561 6.92018 6.94306 7.07970 7.20252 7.26757 7.51880 7.75865 7.98887 8.35611 8.49862 8.64106 8.80044 9.54600 9.89388 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.003165 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.159491 B = 8846.015799 C = 9641.820325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.154 3.846 4 C 0.194 3.806 5 N -0.474 5.474 6 C -0.028 4.028 7 C -0.059 4.059 8 N -0.446 5.446 9 C 0.065 3.935 10 C 0.111 3.889 11 N -0.649 5.649 12 C 0.629 3.371 13 O -0.559 6.559 14 C -0.424 4.424 15 S -0.039 6.039 16 C -0.213 4.213 17 C -0.100 4.100 18 C 0.143 3.857 19 C -0.379 4.379 20 H 0.110 0.890 21 C 0.068 3.932 22 N -0.778 5.778 23 Si 0.925 3.075 24 H -0.259 1.259 25 H -0.276 1.276 26 H -0.258 1.258 27 C 0.136 3.864 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.288 0.712 41 H 0.088 0.912 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 1.430 -16.439 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.111 3.889 4 C -0.070 4.070 5 N -0.193 5.193 6 C -0.177 4.177 7 C -0.192 4.192 8 N -0.128 5.128 9 C -0.077 4.077 10 C -0.014 4.014 11 N -0.387 5.387 12 C 0.430 3.570 13 O -0.441 6.441 14 C -0.542 4.542 15 S 0.217 5.783 16 C -0.347 4.347 17 C -0.132 4.132 18 C 0.132 3.868 19 C -0.410 4.410 20 H 0.128 0.872 21 C -0.154 4.154 22 N -0.402 5.402 23 Si 0.749 3.251 24 H -0.184 1.184 25 H -0.201 1.201 26 H -0.182 1.182 27 C 0.011 3.989 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.188 0.812 32 H 0.191 0.809 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.574 1.581 -16.368 17.364 hybrid contribution 1.363 -0.871 0.468 1.684 sum -4.211 0.710 -15.900 16.463 Atomic orbital electron populations 1.22803 0.80284 1.02692 1.00996 1.87965 1.20517 1.23741 1.94272 1.21412 0.96381 0.83454 0.87676 1.23452 1.03012 0.94444 0.86057 1.70238 1.17510 1.09817 1.21748 1.22337 1.05764 1.00908 0.88714 1.22751 1.07229 0.91899 0.97348 1.45282 1.43550 1.17213 1.06763 1.22190 0.97909 0.84642 1.02967 1.23447 0.89551 0.99001 0.89410 1.49580 1.19640 1.65638 1.03878 1.16481 0.84336 0.76782 0.79405 1.90667 1.21040 1.47299 1.85116 1.22424 1.00547 1.36570 0.94692 1.82836 1.20130 1.71604 1.03754 1.25104 1.02416 1.09569 0.97593 1.21675 0.93106 0.97311 1.01125 1.17908 0.92051 0.88706 0.88182 1.19994 0.97796 1.24026 0.99139 0.87194 1.26364 0.99645 0.93923 0.95430 1.69665 1.32019 1.28373 1.10173 0.86055 0.80956 0.80047 0.78072 1.18351 1.20130 1.18246 1.22884 0.91464 1.02306 0.82226 0.89221 0.92741 0.94071 0.81180 0.80873 0.90319 0.89831 0.88192 0.88267 0.88886 0.84631 0.83893 0.90061 0.89412 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.65 101.05 1.08 1.43 16 2 O -0.35 -5.26 9.52 -35.23 -0.34 -5.60 16 3 C 0.15 2.36 0.76 -90.85 -0.07 2.29 16 4 C 0.19 2.67 5.86 -155.41 -0.91 1.76 16 5 N -0.47 -6.92 10.52 -10.81 -0.11 -7.04 16 6 C -0.03 -0.32 11.87 -17.81 -0.21 -0.54 16 7 C -0.06 -0.57 11.58 -16.56 -0.19 -0.76 16 8 N -0.45 -4.87 3.15 -121.27 -0.38 -5.26 16 9 C 0.07 0.51 11.03 59.85 0.66 1.17 16 10 C 0.11 1.98 6.26 -2.84 -0.02 1.96 16 11 N -0.65 -13.64 3.61 -179.82 -0.65 -14.29 16 12 C 0.63 16.25 8.00 -13.05 -0.10 16.15 16 13 O -0.56 -15.91 15.18 5.14 0.08 -15.83 16 14 C -0.42 -11.12 6.50 -35.88 -0.23 -11.35 16 15 S -0.04 -0.86 19.83 -107.50 -2.13 -2.99 16 16 C -0.21 -4.75 11.07 28.86 0.32 -4.43 16 17 C -0.10 -2.48 9.04 -39.12 -0.35 -2.83 16 18 C 0.14 3.90 5.67 -106.21 -0.60 3.30 16 19 C -0.38 -10.41 8.51 -37.94 -0.32 -10.74 16 20 H 0.11 3.17 6.04 -52.49 -0.32 2.85 16 21 C 0.07 1.69 5.39 -17.28 -0.09 1.59 16 22 N -0.78 -19.07 10.83 55.57 0.60 -18.47 16 23 Si 0.93 18.80 29.57 -169.99 -5.03 13.77 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 27 C 0.14 2.27 8.23 -2.96 -0.02 2.24 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.73 6.96 -51.93 -0.36 0.36 16 30 H 0.04 0.50 7.34 -51.93 -0.38 0.12 16 31 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.88 6.70 -51.93 -0.35 0.53 16 36 H 0.10 1.77 7.70 -51.93 -0.40 1.37 16 37 H 0.09 1.71 5.19 -51.93 -0.27 1.44 16 38 H 0.14 2.57 8.06 -52.48 -0.42 2.14 16 39 H 0.14 3.51 6.42 -52.49 -0.34 3.18 16 40 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 41 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -32.90 363.41 -8.49 -41.39 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.93 Total: 7.59 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.08 Total: 1.24 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.54 Total: -45.05 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.26 Total: -21.43 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.13 Total: -2.99 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.90 -8.49 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646984629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.192 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds