Wall clock time and date at job start Wed Apr 1 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00222 * 2 1 4 4 C 1.50703 * 112.94539 * 295.52387 * 3 2 1 5 5 N 1.30497 * 125.65478 * 122.46339 * 4 3 2 6 6 C 1.34122 * 109.25976 * 180.29045 * 5 4 3 7 7 C 1.34678 * 108.01739 * 359.73005 * 6 5 4 8 8 N 1.35048 * 125.64670 * 302.29009 * 4 3 2 9 9 C 1.46498 * 126.39613 * 359.97438 * 8 4 3 10 10 C 1.53945 * 113.74027 * 67.11304 * 3 2 1 11 11 N 1.47806 * 86.03870 * 90.88149 * 10 3 2 12 12 C 1.34777 * 134.46012 * 204.63837 * 11 10 3 13 13 O 1.21760 * 119.99945 * 179.86763 * 12 11 10 14 14 C 1.46237 * 119.99929 * 359.87406 * 12 11 10 15 15 S 1.75666 * 125.22709 * 0.02562 * 14 12 11 16 16 C 1.75468 * 92.09204 * 180.02562 * 15 14 12 17 17 C 1.32764 * 111.36665 * 0.02562 * 16 15 14 18 18 C 1.39546 * 125.22791 * 179.71749 * 14 12 11 19 19 C 1.40536 * 123.71609 * 359.97438 * 18 14 12 20 20 H 1.08000 * 119.99644 * 23.59259 * 19 18 14 21 21 C 1.40307 * 119.99877 * 203.59876 * 19 18 14 22 22 N 1.30637 * 120.00373 * 9.84812 * 21 19 18 23 23 Si 1.86798 * 119.99661 * 189.85155 * 21 19 18 24 24 H 1.48509 * 109.47408 * 59.99952 * 23 21 19 25 25 H 1.48500 * 109.47067 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47467 * 299.99645 * 23 21 19 27 27 C 1.47589 * 91.04888 * 24.54927 * 11 10 3 28 28 H 1.09000 * 109.47186 * 175.19121 * 1 2 3 29 29 H 1.08998 * 109.47025 * 295.18919 * 1 2 3 30 30 H 1.09004 * 109.46861 * 55.18854 * 1 2 3 31 31 H 1.07997 * 125.99632 * 179.72664 * 6 5 4 32 32 H 1.08000 * 126.58761 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47483 * 265.33741 * 9 8 4 34 34 H 1.09006 * 109.47068 * 145.34065 * 9 8 4 35 35 H 1.09001 * 109.47241 * 25.34046 * 9 8 4 36 36 H 1.09003 * 113.76700 * 205.14723 * 10 3 2 37 37 H 1.09003 * 113.77133 * 336.54339 * 10 3 2 38 38 H 1.08007 * 124.32147 * 179.97438 * 16 15 14 39 39 H 1.07994 * 122.79402 * 179.97438 * 17 16 15 40 40 H 0.96991 * 120.00404 * 180.02562 * 22 21 19 41 41 H 1.08997 * 113.76754 * 221.15020 * 27 11 10 42 42 H 1.08998 * 113.87130 * 89.76789 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7030 2.0854 -1.2523 5 7 1.1109 3.2474 -1.2987 6 6 0.9989 3.6360 -2.5775 7 6 1.5476 2.6812 -3.3527 8 7 1.9978 1.6990 -2.5124 9 6 2.6684 0.4576 -2.9065 10 6 1.7617 2.0945 1.2982 11 7 3.0308 1.5072 1.7771 12 6 3.5502 1.2452 2.9928 13 8 4.6535 0.7387 3.0872 14 6 2.7888 1.5691 4.1986 15 16 1.1909 2.2985 4.2225 16 6 1.1416 2.2872 5.9765 17 6 2.2523 1.7705 6.4883 18 6 3.2173 1.3407 5.5068 19 6 4.4553 0.7604 5.8321 20 1 5.2755 0.8096 5.1312 21 6 4.6256 0.1170 7.0673 22 7 3.5917 -0.1131 7.8319 23 14 6.3307 -0.4103 7.6184 24 1 7.2120 0.7815 7.7101 25 1 6.2410 -1.0626 8.9494 26 1 6.8948 -1.3685 6.6341 27 6 3.4994 1.3208 0.3901 28 1 -0.3633 -1.0240 -0.0861 29 1 -0.3633 0.4374 0.9299 30 1 -0.3633 0.5867 -0.8438 31 1 0.5477 4.5538 -2.9248 32 1 1.6191 2.6892 -4.4303 33 1 3.7373 0.6410 -3.0159 34 1 2.2605 0.1099 -3.8557 35 1 2.5064 -0.3016 -2.1414 36 1 1.7995 3.1762 1.1689 37 1 0.8850 1.7616 1.8538 38 1 0.3136 2.6544 6.5648 39 1 2.4173 1.6751 7.5513 40 1 3.7094 -0.5575 8.6860 41 1 4.0075 0.3713 0.2219 42 1 4.0491 2.1737 -0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646984629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:44 Heat of formation + Delta-G solvation = 38.300580 kcal Electronic energy + Delta-G solvation = -28292.946761 eV Core-core repulsion = 24366.847501 eV Total energy + Delta-G solvation = -3926.099260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.25934 -41.26201 -39.29331 -37.84418 -36.96133 -34.92559 -34.92349 -31.89200 -30.85622 -29.60445 -28.11750 -27.98978 -27.61745 -26.77841 -24.36586 -23.31343 -22.20043 -21.16840 -20.65060 -20.42074 -18.89601 -18.55683 -18.01668 -17.23121 -17.02026 -16.80770 -16.71265 -16.33270 -15.98366 -15.61577 -15.55004 -15.18168 -14.93824 -14.41689 -14.30207 -14.20591 -13.83187 -13.80455 -13.76319 -13.51956 -13.37372 -13.33407 -13.13747 -12.96026 -12.76070 -12.73014 -12.14615 -12.05900 -11.91955 -11.43675 -11.18170 -11.00703 -10.83402 -10.58255 -10.41777 -9.75166 -9.41612 -9.34908 -8.96334 -8.87159 -6.47168 0.29286 0.98653 1.32723 1.35858 1.37061 1.45253 1.76303 1.78656 1.93272 1.98638 2.07252 2.16600 2.24020 2.47729 3.16320 3.20343 3.32446 3.76701 4.00455 4.05237 4.14218 4.24187 4.31341 4.35481 4.37756 4.40851 4.47261 4.52768 4.57393 4.63078 4.71862 4.76483 4.76882 4.96572 5.16739 5.26446 5.33669 5.41096 5.58479 5.80073 5.84892 5.88260 6.15894 6.35248 6.55906 6.71328 6.90273 7.09850 7.60778 8.06536 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.003165 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.159491 B = 8846.015799 C = 9641.820325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.180 3.820 4 C 0.168 3.832 5 N -0.505 5.505 6 C -0.054 4.054 7 C -0.034 4.034 8 N -0.443 5.443 9 C 0.059 3.941 10 C 0.110 3.890 11 N -0.657 5.657 12 C 0.617 3.383 13 O -0.602 6.602 14 C -0.463 4.463 15 S 0.014 5.986 16 C -0.200 4.200 17 C -0.128 4.128 18 C 0.115 3.885 19 C -0.418 4.418 20 H 0.083 0.917 21 C 0.036 3.964 22 N -0.792 5.792 23 Si 0.991 3.009 24 H -0.256 1.256 25 H -0.249 1.249 26 H -0.269 1.269 27 C 0.132 3.868 28 H 0.113 0.887 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.191 0.809 32 H 0.217 0.783 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.176 0.824 39 H 0.141 0.859 40 H 0.302 0.698 41 H 0.089 0.911 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 1.486 -18.273 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.137 3.863 4 C -0.094 4.094 5 N -0.225 5.225 6 C -0.202 4.202 7 C -0.168 4.168 8 N -0.124 5.124 9 C -0.082 4.082 10 C -0.014 4.014 11 N -0.393 5.393 12 C 0.417 3.583 13 O -0.488 6.488 14 C -0.582 4.582 15 S 0.270 5.730 16 C -0.333 4.333 17 C -0.160 4.160 18 C 0.103 3.897 19 C -0.449 4.449 20 H 0.101 0.899 21 C -0.184 4.184 22 N -0.416 5.416 23 Si 0.810 3.190 24 H -0.180 1.180 25 H -0.172 1.172 26 H -0.194 1.194 27 C 0.009 3.991 28 H 0.131 0.869 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.208 0.792 32 H 0.233 0.767 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.193 0.807 39 H 0.159 0.841 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.695 1.645 -18.240 19.500 hybrid contribution 1.558 -0.839 0.857 1.966 sum -5.137 0.806 -17.383 18.144 Atomic orbital electron populations 1.22930 0.78886 1.04249 1.00664 1.87948 1.21974 1.23635 1.94335 1.20807 0.94630 0.83230 0.87631 1.22793 1.05467 0.94733 0.86448 1.70143 1.18147 1.10339 1.23907 1.22825 1.06959 1.02497 0.87936 1.23411 1.04322 0.90192 0.98861 1.45460 1.42883 1.18170 1.05919 1.22426 0.98721 0.83116 1.03933 1.23538 0.87782 0.99294 0.90822 1.49555 1.21015 1.64629 1.04118 1.16651 0.83988 0.76730 0.80921 1.90612 1.22697 1.49234 1.86252 1.22899 1.02965 1.37335 0.94984 1.82493 1.17010 1.70223 1.03271 1.25607 1.02378 1.07068 0.98270 1.21574 0.93973 0.99743 1.00710 1.18368 0.92868 0.89022 0.89418 1.20004 0.97723 1.26601 1.00536 0.89886 1.27066 1.03493 0.93285 0.94579 1.69642 1.33455 1.27892 1.10627 0.85124 0.76036 0.79486 0.78360 1.18024 1.17176 1.19422 1.23128 0.93244 1.02974 0.79738 0.86904 0.93898 0.93340 0.79214 0.76658 0.89066 0.86660 0.89560 0.88251 0.89577 0.80712 0.84136 0.88671 0.89300 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.65 113.37 1.21 1.89 16 2 O -0.36 -10.78 9.52 -148.98 -1.42 -12.20 16 3 C 0.18 5.47 0.76 -10.88 -0.01 5.46 16 4 C 0.17 4.41 5.86 138.13 0.81 5.22 16 5 N -0.50 -14.12 10.52 -188.13 -1.98 -16.09 16 6 C -0.05 -1.10 11.87 83.53 0.99 -0.11 16 7 C -0.03 -0.52 11.58 83.09 0.96 0.44 16 8 N -0.44 -8.47 3.15 -537.60 -1.69 -10.17 16 9 C 0.06 0.75 11.03 127.77 1.41 2.16 16 10 C 0.11 3.98 6.26 86.44 0.54 4.52 16 11 N -0.66 -28.55 3.61 -844.84 -3.05 -31.60 16 12 C 0.62 33.51 8.00 86.32 0.69 34.20 16 13 O -0.60 -36.50 15.18 -4.54 -0.07 -36.57 16 14 C -0.46 -25.30 6.50 24.67 0.16 -25.14 16 15 S 0.01 0.61 19.83 -56.49 -1.12 -0.51 16 16 C -0.20 -8.73 11.07 66.64 0.74 -7.99 16 17 C -0.13 -6.46 9.04 22.61 0.20 -6.26 16 18 C 0.11 6.54 5.67 -20.89 -0.12 6.42 16 19 C -0.42 -24.27 8.51 23.33 0.20 -24.07 16 20 H 0.08 5.15 6.04 -2.91 -0.02 5.14 16 21 C 0.04 1.83 5.39 85.37 0.46 2.29 16 22 N -0.79 -39.30 10.83 21.89 0.24 -39.07 16 23 Si 0.99 39.23 29.57 68.60 2.03 41.26 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 25 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 C 0.13 4.50 8.23 86.48 0.71 5.21 16 28 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.04 1.13 6.96 -2.39 -0.02 1.11 16 30 H 0.05 1.10 7.34 -2.38 -0.02 1.08 16 31 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.22 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.09 1.37 6.70 -2.39 -0.02 1.35 16 36 H 0.10 3.59 7.70 -2.39 -0.02 3.57 16 37 H 0.09 3.21 5.19 -2.39 -0.01 3.20 16 38 H 0.18 6.14 8.06 -2.91 -0.02 6.12 16 39 H 0.14 7.05 6.42 -2.91 -0.02 7.03 16 40 H 0.30 13.14 8.29 -92.71 -0.77 12.38 16 41 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.10 3.15 8.09 -2.39 -0.02 3.13 16 Total: -1.00 -76.14 363.41 2.96 -73.18 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 1.07 Total: 27.52 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 8.96 Total: 4.23 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -6.49 Total: -96.93 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -1.49 Total: -48.76 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -1.12 Total: -0.51 kcal Total: -76.14 2.96 -73.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646984629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.483 kcal (2) G-P(sol) polarization free energy of solvation -76.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds