Wall clock time and date at job start Wed Apr 1 2020 04:26:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35971 * 117.00050 * 2 1
4 4 C 1.37562 * 120.82714 * 180.27286 * 3 2 1
5 5 C 1.38040 * 114.24953 * 180.23847 * 4 3 2
6 6 C 1.47113 * 127.75989 * 179.80148 * 5 4 3
7 7 O 1.21623 * 120.00202 * 359.70897 * 6 5 4
8 8 N 1.34784 * 119.99782 * 179.70847 * 6 5 4
9 9 C 1.46494 * 119.99635 * 180.02562 * 8 6 5
10 10 C 1.53002 * 109.47001 * 180.02562 * 9 8 6
11 11 H 1.09007 * 109.46611 * 294.99779 * 10 9 8
12 12 N 1.46500 * 109.47238 * 54.99524 * 10 9 8
13 13 C 1.36936 * 120.00086 * 205.00192 * 12 10 9
14 14 H 1.08004 * 119.99835 * 0.02562 * 13 12 10
15 15 C 1.38809 * 120.00172 * 180.02562 * 13 12 10
16 16 N 1.31618 * 119.99942 * 359.97438 * 15 13 12
17 17 Si 1.86801 * 120.00330 * 180.02562 * 15 13 12
18 18 H 1.48495 * 109.47223 * 59.99349 * 17 15 13
19 19 H 1.48496 * 109.47302 * 180.02562 * 17 15 13
20 20 H 1.48506 * 109.46636 * 299.99859 * 17 15 13
21 21 C 1.50703 * 109.47401 * 175.00166 * 10 9 8
22 22 C 1.38232 * 119.99899 * 279.72306 * 21 10 9
23 23 C 1.38230 * 120.00460 * 179.78507 * 22 21 10
24 24 C 1.38240 * 119.99206 * 0.44600 * 23 22 21
25 25 C 1.38231 * 120.00405 * 359.80808 * 24 23 22
26 26 C 1.38231 * 120.00003 * 359.97438 * 25 24 23
27 27 S 1.77237 * 104.47769 * 359.54730 * 5 4 3
28 28 N 1.30355 * 120.82140 * 359.97438 * 3 2 1
29 29 H 1.09002 * 109.46896 * 299.99346 * 1 2 3
30 30 H 1.09001 * 109.47522 * 59.99751 * 1 2 3
31 31 H 1.09004 * 109.46983 * 180.02562 * 1 2 3
32 32 H 1.08007 * 122.87664 * 0.07846 * 4 3 2
33 33 H 0.96995 * 120.00015 * 359.72718 * 8 6 5
34 34 H 1.09005 * 109.47306 * 299.99972 * 9 8 6
35 35 H 1.09002 * 109.47518 * 60.00210 * 9 8 6
36 36 H 0.96997 * 119.99749 * 25.00488 * 12 10 9
37 37 H 0.97003 * 120.00490 * 180.02562 * 16 15 13
38 38 H 1.08007 * 120.00051 * 359.97438 * 22 21 10
39 39 H 1.07997 * 120.00471 * 180.26991 * 23 22 21
40 40 H 1.08001 * 119.99483 * 179.83210 * 24 23 22
41 41 H 1.08003 * 120.00316 * 180.02562 * 25 24 23
42 42 H 1.08003 * 120.00052 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2115 0.0000
4 6 3.4188 1.3033 -0.0056
5 6 3.9006 2.5969 0.0004
6 6 5.3049 3.0353 0.0008
7 8 6.1992 2.2111 0.0008
8 7 5.6003 4.3503 0.0012
9 6 6.9987 4.7868 0.0011
10 6 7.0557 6.3158 0.0023
11 1 6.6349 6.6957 -0.9288
12 7 6.2825 6.8325 1.1343
13 6 5.7538 8.0946 1.0832
14 1 5.9065 8.7090 0.2082
15 6 5.0217 8.5844 2.1560
16 7 4.8351 7.8354 3.2221
17 14 4.2998 10.3059 2.0861
18 1 3.3632 10.4036 0.9379
19 1 3.5687 10.5877 3.3475
20 1 5.3945 11.2951 1.9174
21 6 8.4889 6.7650 0.1259
22 6 9.1038 6.7810 1.3638
23 6 10.4198 7.1888 1.4768
24 6 11.1180 7.5894 0.3529
25 6 10.5014 7.5785 -0.8842
26 6 9.1869 7.1664 -0.9977
27 16 2.4470 3.6110 -0.0002
28 7 1.3521 2.3148 -0.0005
29 1 -0.3633 0.5137 0.8901
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 4.0644 0.4374 -0.0115
33 1 4.8870 5.0077 -0.0028
34 1 7.4988 4.4043 0.8909
35 1 7.4985 4.4050 -0.8891
36 1 6.1451 6.2805 1.9200
37 1 4.3232 8.1775 3.9717
38 1 8.5570 6.4719 2.2425
39 1 10.9015 7.1971 2.4433
40 1 12.1453 7.9106 0.4415
41 1 11.0470 7.8911 -1.7623
42 1 8.7050 7.1582 -1.9643
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001664578107.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:26:09
Heat of formation + Delta-G solvation = 17.114640 kcal
Electronic energy + Delta-G solvation = -26904.122280 eV
Core-core repulsion = 22977.104329 eV
Total energy + Delta-G solvation = -3927.017952 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 1.57 seconds
Orbital eigenvalues (eV)
-40.33080 -39.57956 -38.79874 -36.60354 -35.94074 -33.76035 -32.16619 -31.34370
-30.44708 -29.60925 -28.44093 -27.60548 -25.03626 -23.66925 -22.82751 -21.99529
-21.43220 -20.25688 -19.72632 -18.66109 -17.82914 -17.40193 -16.47934 -16.39080
-16.27040 -15.78951 -15.39746 -14.88488 -14.79745 -14.66956 -14.21611 -13.99718
-13.66547 -13.46960 -13.30767 -13.07441 -12.89544 -12.82973 -12.40017 -12.23995
-12.05552 -11.51327 -11.28821 -11.19044 -10.97660 -10.90836 -10.86210 -10.75010
-10.50777 -10.21090 -10.10887 -9.83756 -9.81205 -9.12545 -8.91443 -8.47408
-8.44088 -8.23464 -7.18716 -5.90255 -3.22451 0.07779 1.10702 1.47102
1.82074 1.89526 2.13301 2.78064 3.09836 3.34741 3.37670 3.42753
3.43273 4.26508 4.47146 4.52954 4.90086 4.94058 5.02878 5.14297
5.17750 5.30755 5.32534 5.36468 5.41812 5.48666 5.54556 5.58592
5.71532 5.78045 5.95949 5.99080 6.04744 6.16919 6.33049 6.42208
6.56516 6.58424 6.85228 6.89850 6.98388 7.23841 7.48952 7.57406
7.60077 8.16614 8.25415 9.38620 9.86840 10.23458 11.30795
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.010036 B = 0.003179 C = 0.002536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2789.345454 B = 8806.081671 C =11039.591987
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.297 6.297
3 C 0.301 3.699
4 C -0.135 4.135
5 C -0.178 4.178
6 C 0.590 3.410
7 O -0.526 6.526
8 N -0.700 5.700
9 C 0.120 3.880
10 C 0.197 3.803
11 H 0.068 0.932
12 N -0.714 5.714
13 C -0.248 4.248
14 H 0.071 0.929
15 C -0.002 4.002
16 N -0.927 5.927
17 Si 0.905 3.095
18 H -0.284 1.284
19 H -0.291 1.291
20 H -0.286 1.286
21 C -0.083 4.083
22 C -0.083 4.083
23 C -0.128 4.128
24 C -0.133 4.133
25 C -0.130 4.130
26 C -0.119 4.119
27 S 0.317 5.683
28 N -0.517 5.517
29 H 0.060 0.940
30 H 0.060 0.940
31 H 0.101 0.899
32 H 0.176 0.824
33 H 0.412 0.588
34 H 0.073 0.927
35 H 0.074 0.926
36 H 0.387 0.613
37 H 0.258 0.742
38 H 0.124 0.876
39 H 0.114 0.886
40 H 0.111 0.889
41 H 0.112 0.888
42 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.597 -10.464 -7.958 13.160
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.203 6.203
3 C 0.088 3.912
4 C -0.173 4.173
5 C -0.311 4.311
6 C 0.373 3.627
7 O -0.404 6.404
8 N -0.351 5.351
9 C -0.004 4.004
10 C 0.086 3.914
11 H 0.085 0.915
12 N -0.355 5.355
13 C -0.378 4.378
14 H 0.089 0.911
15 C -0.199 4.199
16 N -0.574 5.574
17 Si 0.735 3.265
18 H -0.211 1.211
19 H -0.217 1.217
20 H -0.212 1.212
21 C -0.087 4.087
22 C -0.101 4.101
23 C -0.146 4.146
24 C -0.152 4.152
25 C -0.148 4.148
26 C -0.138 4.138
27 S 0.467 5.533
28 N -0.359 5.359
29 H 0.079 0.921
30 H 0.078 0.922
31 H 0.119 0.881
32 H 0.194 0.806
33 H 0.249 0.751
34 H 0.091 0.909
35 H 0.092 0.908
36 H 0.222 0.778
37 H 0.067 0.933
38 H 0.141 0.859
39 H 0.132 0.868
40 H 0.129 0.871
41 H 0.130 0.870
42 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -1.421 -9.512 -7.961 12.485
hybrid contribution -0.004 -0.034 0.452 0.453
sum -1.425 -9.546 -7.509 12.229
Atomic orbital electron populations
1.22967 0.76820 1.03466 1.02626 1.86294 1.22907 1.22672 1.88418
1.19879 0.89768 0.85244 0.96313 1.20691 0.92267 0.98492 1.05874
1.26077 0.99710 0.97790 1.07475 1.16632 0.85187 0.83174 0.77667
1.90824 1.46676 1.52755 1.50125 1.45828 1.10449 1.05987 1.72855
1.21726 0.80721 0.95387 1.02555 1.19491 0.88143 0.89729 0.94026
0.91453 1.42466 1.60417 1.16223 1.16441 1.19126 1.26367 0.91189
1.01150 0.91066 1.24709 1.00757 0.98166 0.96277 1.69636 1.44693
1.36580 1.06461 0.86317 0.78883 0.84452 0.76805 1.21089 1.21689
1.21245 1.20940 0.96903 0.97808 0.93002 1.21010 0.93664 0.97637
0.97775 1.21110 0.95106 1.00277 0.98087 1.20991 0.99449 1.01596
0.93118 1.20984 0.95334 1.01342 0.97153 1.21010 0.94436 1.00230
0.98146 1.85438 0.89501 1.10697 1.67671 1.76380 1.27356 1.01351
1.30795 0.92082 0.92155 0.88106 0.80645 0.75125 0.90904 0.90814
0.77823 0.93251 0.85851 0.86840 0.87084 0.86979 0.86701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 31.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.31 10.43 101.05 1.05 1.37 16
2 O -0.30 -3.47 10.51 -19.65 -0.21 -3.68 16
3 C 0.30 3.97 7.36 -18.42 -0.14 3.83 16
4 C -0.14 -1.78 10.09 -39.90 -0.40 -2.18 16
5 C -0.18 -2.53 6.74 -36.06 -0.24 -2.77 16
6 C 0.59 9.36 7.80 -12.66 -0.10 9.26 16
7 O -0.53 -9.54 16.95 5.26 0.09 -9.45 16
8 N -0.70 -10.85 5.38 -61.48 -0.33 -11.19 16
9 C 0.12 1.88 5.21 -4.04 -0.02 1.86 16
10 C 0.20 3.41 2.65 -69.08 -0.18 3.23 16
11 H 0.07 1.15 7.94 -51.92 -0.41 0.74 16
12 N -0.71 -15.34 3.79 -54.55 -0.21 -15.55 16
13 C -0.25 -6.12 9.92 -15.06 -0.15 -6.27 16
14 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16
15 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16
16 N -0.93 -25.65 13.06 55.49 0.72 -24.93 16
17 Si 0.90 21.11 29.55 -169.99 -5.02 16.09 16
18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
21 C -0.08 -1.41 4.92 -104.62 -0.52 -1.93 16
22 C -0.08 -1.45 9.33 -39.59 -0.37 -1.82 16
23 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16
24 C -0.13 -1.90 10.05 -39.58 -0.40 -2.29 16
25 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16
26 C -0.12 -1.82 9.67 -39.58 -0.38 -2.20 16
27 S 0.32 4.34 23.27 -107.50 -2.50 1.84 16
28 N -0.52 -7.18 11.03 29.19 0.32 -6.86 16
29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16
30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16
31 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16
32 H 0.18 2.07 8.06 -52.48 -0.42 1.65 16
33 H 0.41 6.47 7.50 -40.82 -0.31 6.16 16
34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16
35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
36 H 0.39 9.00 7.80 -40.82 -0.32 8.69 16
37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
38 H 0.12 2.33 7.71 -52.48 -0.40 1.92 16
39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16
40 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16
41 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16
42 H 0.11 1.52 8.04 -52.48 -0.42 1.10 16
LS Contribution 382.67 15.07 5.77 5.77
Total: -1.00 -29.36 382.67 -9.32 -38.67
By element:
Atomic # 1 Polarization: 19.19 SS G_CDS: -5.21 Total: 13.98 kcal
Atomic # 6 Polarization: -1.96 SS G_CDS: -2.74 Total: -4.70 kcal
Atomic # 7 Polarization: -59.03 SS G_CDS: 0.51 Total: -58.52 kcal
Atomic # 8 Polarization: -13.01 SS G_CDS: -0.12 Total: -13.13 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Atomic # 16 Polarization: 4.34 SS G_CDS: -2.50 Total: 1.84 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -29.36 -9.32 -38.67 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001664578107.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.787 kcal
(2) G-P(sol) polarization free energy of solvation -29.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.430 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.57 seconds