Wall clock time and date at job start Wed Apr 1 2020 04:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35971 * 117.00050 * 2 1 4 4 C 1.37562 * 120.82714 * 180.27286 * 3 2 1 5 5 C 1.38040 * 114.24953 * 180.23847 * 4 3 2 6 6 C 1.47113 * 127.75989 * 179.80148 * 5 4 3 7 7 O 1.21623 * 120.00202 * 359.70897 * 6 5 4 8 8 N 1.34784 * 119.99782 * 179.70847 * 6 5 4 9 9 C 1.46494 * 119.99635 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47001 * 180.02562 * 9 8 6 11 11 H 1.09007 * 109.46611 * 294.99779 * 10 9 8 12 12 N 1.46500 * 109.47238 * 54.99524 * 10 9 8 13 13 C 1.36936 * 120.00086 * 205.00192 * 12 10 9 14 14 H 1.08004 * 119.99835 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00172 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99942 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00330 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47223 * 59.99349 * 17 15 13 19 19 H 1.48496 * 109.47302 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46636 * 299.99859 * 17 15 13 21 21 C 1.50703 * 109.47401 * 175.00166 * 10 9 8 22 22 C 1.38232 * 119.99899 * 279.72306 * 21 10 9 23 23 C 1.38230 * 120.00460 * 179.78507 * 22 21 10 24 24 C 1.38240 * 119.99206 * 0.44600 * 23 22 21 25 25 C 1.38231 * 120.00405 * 359.80808 * 24 23 22 26 26 C 1.38231 * 120.00003 * 359.97438 * 25 24 23 27 27 S 1.77237 * 104.47769 * 359.54730 * 5 4 3 28 28 N 1.30355 * 120.82140 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46896 * 299.99346 * 1 2 3 30 30 H 1.09001 * 109.47522 * 59.99751 * 1 2 3 31 31 H 1.09004 * 109.46983 * 180.02562 * 1 2 3 32 32 H 1.08007 * 122.87664 * 0.07846 * 4 3 2 33 33 H 0.96995 * 120.00015 * 359.72718 * 8 6 5 34 34 H 1.09005 * 109.47306 * 299.99972 * 9 8 6 35 35 H 1.09002 * 109.47518 * 60.00210 * 9 8 6 36 36 H 0.96997 * 119.99749 * 25.00488 * 12 10 9 37 37 H 0.97003 * 120.00490 * 180.02562 * 16 15 13 38 38 H 1.08007 * 120.00051 * 359.97438 * 22 21 10 39 39 H 1.07997 * 120.00471 * 180.26991 * 23 22 21 40 40 H 1.08001 * 119.99483 * 179.83210 * 24 23 22 41 41 H 1.08003 * 120.00316 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.00052 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4188 1.3033 -0.0056 5 6 3.9006 2.5969 0.0004 6 6 5.3049 3.0353 0.0008 7 8 6.1992 2.2111 0.0008 8 7 5.6003 4.3503 0.0012 9 6 6.9987 4.7868 0.0011 10 6 7.0557 6.3158 0.0023 11 1 6.6349 6.6957 -0.9288 12 7 6.2825 6.8325 1.1343 13 6 5.7538 8.0946 1.0832 14 1 5.9065 8.7090 0.2082 15 6 5.0217 8.5844 2.1560 16 7 4.8351 7.8354 3.2221 17 14 4.2998 10.3059 2.0861 18 1 3.3632 10.4036 0.9379 19 1 3.5687 10.5877 3.3475 20 1 5.3945 11.2951 1.9174 21 6 8.4889 6.7650 0.1259 22 6 9.1038 6.7810 1.3638 23 6 10.4198 7.1888 1.4768 24 6 11.1180 7.5894 0.3529 25 6 10.5014 7.5785 -0.8842 26 6 9.1869 7.1664 -0.9977 27 16 2.4470 3.6110 -0.0002 28 7 1.3521 2.3148 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0644 0.4374 -0.0115 33 1 4.8870 5.0077 -0.0028 34 1 7.4988 4.4043 0.8909 35 1 7.4985 4.4050 -0.8891 36 1 6.1451 6.2805 1.9200 37 1 4.3232 8.1775 3.9717 38 1 8.5570 6.4719 2.2425 39 1 10.9015 7.1971 2.4433 40 1 12.1453 7.9106 0.4415 41 1 11.0470 7.8911 -1.7623 42 1 8.7050 7.1582 -1.9643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664578107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:09 Heat of formation + Delta-G solvation = 17.114640 kcal Electronic energy + Delta-G solvation = -26904.122280 eV Core-core repulsion = 22977.104329 eV Total energy + Delta-G solvation = -3927.017952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.33080 -39.57956 -38.79874 -36.60354 -35.94074 -33.76035 -32.16619 -31.34370 -30.44708 -29.60925 -28.44093 -27.60548 -25.03626 -23.66925 -22.82751 -21.99529 -21.43220 -20.25688 -19.72632 -18.66109 -17.82914 -17.40193 -16.47934 -16.39080 -16.27040 -15.78951 -15.39746 -14.88488 -14.79745 -14.66956 -14.21611 -13.99718 -13.66547 -13.46960 -13.30767 -13.07441 -12.89544 -12.82973 -12.40017 -12.23995 -12.05552 -11.51327 -11.28821 -11.19044 -10.97660 -10.90836 -10.86210 -10.75010 -10.50777 -10.21090 -10.10887 -9.83756 -9.81205 -9.12545 -8.91443 -8.47408 -8.44088 -8.23464 -7.18716 -5.90255 -3.22451 0.07779 1.10702 1.47102 1.82074 1.89526 2.13301 2.78064 3.09836 3.34741 3.37670 3.42753 3.43273 4.26508 4.47146 4.52954 4.90086 4.94058 5.02878 5.14297 5.17750 5.30755 5.32534 5.36468 5.41812 5.48666 5.54556 5.58592 5.71532 5.78045 5.95949 5.99080 6.04744 6.16919 6.33049 6.42208 6.56516 6.58424 6.85228 6.89850 6.98388 7.23841 7.48952 7.57406 7.60077 8.16614 8.25415 9.38620 9.86840 10.23458 11.30795 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.003179 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.345454 B = 8806.081671 C =11039.591987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.301 3.699 4 C -0.135 4.135 5 C -0.178 4.178 6 C 0.590 3.410 7 O -0.526 6.526 8 N -0.700 5.700 9 C 0.120 3.880 10 C 0.197 3.803 11 H 0.068 0.932 12 N -0.714 5.714 13 C -0.248 4.248 14 H 0.071 0.929 15 C -0.002 4.002 16 N -0.927 5.927 17 Si 0.905 3.095 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.083 4.083 22 C -0.083 4.083 23 C -0.128 4.128 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.119 4.119 27 S 0.317 5.683 28 N -0.517 5.517 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.176 0.824 33 H 0.412 0.588 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.387 0.613 37 H 0.258 0.742 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -10.464 -7.958 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.203 6.203 3 C 0.088 3.912 4 C -0.173 4.173 5 C -0.311 4.311 6 C 0.373 3.627 7 O -0.404 6.404 8 N -0.351 5.351 9 C -0.004 4.004 10 C 0.086 3.914 11 H 0.085 0.915 12 N -0.355 5.355 13 C -0.378 4.378 14 H 0.089 0.911 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.735 3.265 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.087 4.087 22 C -0.101 4.101 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.138 4.138 27 S 0.467 5.533 28 N -0.359 5.359 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.194 0.806 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.421 -9.512 -7.961 12.485 hybrid contribution -0.004 -0.034 0.452 0.453 sum -1.425 -9.546 -7.509 12.229 Atomic orbital electron populations 1.22967 0.76820 1.03466 1.02626 1.86294 1.22907 1.22672 1.88418 1.19879 0.89768 0.85244 0.96313 1.20691 0.92267 0.98492 1.05874 1.26077 0.99710 0.97790 1.07475 1.16632 0.85187 0.83174 0.77667 1.90824 1.46676 1.52755 1.50125 1.45828 1.10449 1.05987 1.72855 1.21726 0.80721 0.95387 1.02555 1.19491 0.88143 0.89729 0.94026 0.91453 1.42466 1.60417 1.16223 1.16441 1.19126 1.26367 0.91189 1.01150 0.91066 1.24709 1.00757 0.98166 0.96277 1.69636 1.44693 1.36580 1.06461 0.86317 0.78883 0.84452 0.76805 1.21089 1.21689 1.21245 1.20940 0.96903 0.97808 0.93002 1.21010 0.93664 0.97637 0.97775 1.21110 0.95106 1.00277 0.98087 1.20991 0.99449 1.01596 0.93118 1.20984 0.95334 1.01342 0.97153 1.21010 0.94436 1.00230 0.98146 1.85438 0.89501 1.10697 1.67671 1.76380 1.27356 1.01351 1.30795 0.92082 0.92155 0.88106 0.80645 0.75125 0.90904 0.90814 0.77823 0.93251 0.85851 0.86840 0.87084 0.86979 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.43 101.05 1.05 1.37 16 2 O -0.30 -3.47 10.51 -19.65 -0.21 -3.68 16 3 C 0.30 3.97 7.36 -18.42 -0.14 3.83 16 4 C -0.14 -1.78 10.09 -39.90 -0.40 -2.18 16 5 C -0.18 -2.53 6.74 -36.06 -0.24 -2.77 16 6 C 0.59 9.36 7.80 -12.66 -0.10 9.26 16 7 O -0.53 -9.54 16.95 5.26 0.09 -9.45 16 8 N -0.70 -10.85 5.38 -61.48 -0.33 -11.19 16 9 C 0.12 1.88 5.21 -4.04 -0.02 1.86 16 10 C 0.20 3.41 2.65 -69.08 -0.18 3.23 16 11 H 0.07 1.15 7.94 -51.92 -0.41 0.74 16 12 N -0.71 -15.34 3.79 -54.55 -0.21 -15.55 16 13 C -0.25 -6.12 9.92 -15.06 -0.15 -6.27 16 14 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 15 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 16 N -0.93 -25.65 13.06 55.49 0.72 -24.93 16 17 Si 0.90 21.11 29.55 -169.99 -5.02 16.09 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.08 -1.41 4.92 -104.62 -0.52 -1.93 16 22 C -0.08 -1.45 9.33 -39.59 -0.37 -1.82 16 23 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 24 C -0.13 -1.90 10.05 -39.58 -0.40 -2.29 16 25 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16 26 C -0.12 -1.82 9.67 -39.58 -0.38 -2.20 16 27 S 0.32 4.34 23.27 -107.50 -2.50 1.84 16 28 N -0.52 -7.18 11.03 29.19 0.32 -6.86 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.18 2.07 8.06 -52.48 -0.42 1.65 16 33 H 0.41 6.47 7.50 -40.82 -0.31 6.16 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.39 9.00 7.80 -40.82 -0.32 8.69 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.12 2.33 7.71 -52.48 -0.40 1.92 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 42 H 0.11 1.52 8.04 -52.48 -0.42 1.10 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -29.36 382.67 -9.32 -38.67 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.21 Total: 13.98 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.74 Total: -4.70 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.51 Total: -58.52 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.12 Total: -13.13 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -2.50 Total: 1.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.36 -9.32 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664578107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.787 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds