Wall clock time and date at job start Wed Apr 1 2020 04:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35971 * 117.00050 * 2 1 4 4 C 1.37562 * 120.82714 * 180.27286 * 3 2 1 5 5 C 1.38040 * 114.24953 * 180.23847 * 4 3 2 6 6 C 1.47113 * 127.75989 * 179.80148 * 5 4 3 7 7 O 1.21623 * 120.00202 * 359.70897 * 6 5 4 8 8 N 1.34784 * 119.99782 * 179.70847 * 6 5 4 9 9 C 1.46494 * 119.99635 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47001 * 180.02562 * 9 8 6 11 11 H 1.09007 * 109.46611 * 294.99779 * 10 9 8 12 12 N 1.46500 * 109.47238 * 54.99524 * 10 9 8 13 13 C 1.36936 * 120.00086 * 205.00192 * 12 10 9 14 14 H 1.08004 * 119.99835 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00172 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99942 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00330 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47223 * 59.99349 * 17 15 13 19 19 H 1.48496 * 109.47302 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46636 * 299.99859 * 17 15 13 21 21 C 1.50703 * 109.47401 * 175.00166 * 10 9 8 22 22 C 1.38232 * 119.99899 * 279.72306 * 21 10 9 23 23 C 1.38230 * 120.00460 * 179.78507 * 22 21 10 24 24 C 1.38240 * 119.99206 * 0.44600 * 23 22 21 25 25 C 1.38231 * 120.00405 * 359.80808 * 24 23 22 26 26 C 1.38231 * 120.00003 * 359.97438 * 25 24 23 27 27 S 1.77237 * 104.47769 * 359.54730 * 5 4 3 28 28 N 1.30355 * 120.82140 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46896 * 299.99346 * 1 2 3 30 30 H 1.09001 * 109.47522 * 59.99751 * 1 2 3 31 31 H 1.09004 * 109.46983 * 180.02562 * 1 2 3 32 32 H 1.08007 * 122.87664 * 0.07846 * 4 3 2 33 33 H 0.96995 * 120.00015 * 359.72718 * 8 6 5 34 34 H 1.09005 * 109.47306 * 299.99972 * 9 8 6 35 35 H 1.09002 * 109.47518 * 60.00210 * 9 8 6 36 36 H 0.96997 * 119.99749 * 25.00488 * 12 10 9 37 37 H 0.97003 * 120.00490 * 180.02562 * 16 15 13 38 38 H 1.08007 * 120.00051 * 359.97438 * 22 21 10 39 39 H 1.07997 * 120.00471 * 180.26991 * 23 22 21 40 40 H 1.08001 * 119.99483 * 179.83210 * 24 23 22 41 41 H 1.08003 * 120.00316 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.00052 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4188 1.3033 -0.0056 5 6 3.9006 2.5969 0.0004 6 6 5.3049 3.0353 0.0008 7 8 6.1992 2.2111 0.0008 8 7 5.6003 4.3503 0.0012 9 6 6.9987 4.7868 0.0011 10 6 7.0557 6.3158 0.0023 11 1 6.6349 6.6957 -0.9288 12 7 6.2825 6.8325 1.1343 13 6 5.7538 8.0946 1.0832 14 1 5.9065 8.7090 0.2082 15 6 5.0217 8.5844 2.1560 16 7 4.8351 7.8354 3.2221 17 14 4.2998 10.3059 2.0861 18 1 3.3632 10.4036 0.9379 19 1 3.5687 10.5877 3.3475 20 1 5.3945 11.2951 1.9174 21 6 8.4889 6.7650 0.1259 22 6 9.1038 6.7810 1.3638 23 6 10.4198 7.1888 1.4768 24 6 11.1180 7.5894 0.3529 25 6 10.5014 7.5785 -0.8842 26 6 9.1869 7.1664 -0.9977 27 16 2.4470 3.6110 -0.0002 28 7 1.3521 2.3148 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0644 0.4374 -0.0115 33 1 4.8870 5.0077 -0.0028 34 1 7.4988 4.4043 0.8909 35 1 7.4985 4.4050 -0.8891 36 1 6.1451 6.2805 1.9200 37 1 4.3232 8.1775 3.9717 38 1 8.5570 6.4719 2.2425 39 1 10.9015 7.1971 2.4433 40 1 12.1453 7.9106 0.4415 41 1 11.0470 7.8911 -1.7623 42 1 8.7050 7.1582 -1.9643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664578107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:08 Heat of formation + Delta-G solvation = -2.313848 kcal Electronic energy + Delta-G solvation = -26904.964763 eV Core-core repulsion = 22977.104329 eV Total energy + Delta-G solvation = -3927.860434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38099 -40.81301 -40.03744 -37.66930 -37.28905 -35.31754 -33.74956 -32.48434 -31.66902 -31.15487 -29.52142 -28.70524 -26.30114 -25.30629 -24.09182 -23.20861 -22.57150 -21.54907 -20.93368 -19.82139 -19.25346 -18.78206 -17.71355 -17.46923 -17.32811 -17.01862 -16.84772 -16.32038 -15.90830 -15.78790 -15.70578 -15.37730 -15.02369 -14.66788 -14.49176 -14.38311 -14.15988 -14.03463 -13.80580 -13.39781 -13.00195 -12.88645 -12.75639 -12.55794 -12.44715 -12.15959 -12.14288 -11.99558 -11.95003 -11.81766 -11.60787 -11.41723 -10.95472 -10.93479 -10.21653 -9.64380 -9.51953 -9.50566 -9.00726 -7.89162 -5.18514 -1.03521 0.01646 0.40744 0.61213 0.68352 1.05820 1.51576 1.52747 1.57783 1.69619 1.87503 2.28213 2.58961 3.04794 3.40481 3.47127 3.75121 3.82499 4.03172 4.08941 4.19477 4.24509 4.30517 4.35076 4.37287 4.38638 4.44579 4.53832 4.71217 4.71751 4.82500 4.84785 4.96641 5.04158 5.17996 5.31769 5.34137 5.58839 5.72661 5.76854 5.92037 5.96861 6.27081 6.29081 6.32124 6.88559 7.39416 8.06184 8.32599 9.32443 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.003179 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.345454 B = 8806.081671 C =11039.591987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.300 6.300 3 C 0.301 3.699 4 C -0.125 4.125 5 C -0.190 4.190 6 C 0.594 3.406 7 O -0.551 6.551 8 N -0.698 5.698 9 C 0.129 3.871 10 C 0.202 3.798 11 H 0.075 0.925 12 N -0.719 5.719 13 C -0.231 4.231 14 H 0.075 0.925 15 C -0.059 4.059 16 N -0.961 5.961 17 Si 0.957 3.043 18 H -0.275 1.275 19 H -0.302 1.302 20 H -0.287 1.287 21 C -0.101 4.101 22 C -0.109 4.109 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.125 4.125 27 S 0.314 5.686 28 N -0.524 5.524 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.134 0.866 32 H 0.189 0.811 33 H 0.411 0.589 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.376 0.624 37 H 0.249 0.751 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.180 -10.512 -9.871 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.206 6.206 3 C 0.088 3.912 4 C -0.163 4.163 5 C -0.322 4.322 6 C 0.379 3.621 7 O -0.431 6.431 8 N -0.348 5.348 9 C 0.005 3.995 10 C 0.093 3.907 11 H 0.093 0.907 12 N -0.359 5.359 13 C -0.363 4.363 14 H 0.093 0.907 15 C -0.252 4.252 16 N -0.611 5.611 17 Si 0.788 3.212 18 H -0.201 1.201 19 H -0.228 1.228 20 H -0.214 1.214 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.143 4.143 27 S 0.464 5.536 28 N -0.366 5.366 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.206 0.794 33 H 0.248 0.752 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.208 0.792 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.630 -9.559 -9.926 13.795 hybrid contribution -0.184 -0.103 0.972 0.995 sum -0.814 -9.662 -8.954 13.199 Atomic orbital electron populations 1.23254 0.75082 1.05659 1.02456 1.86311 1.24611 1.21675 1.88039 1.19965 0.89855 0.85656 0.95726 1.20875 0.92567 0.98500 1.04383 1.25865 0.98980 0.98426 1.08948 1.16748 0.85634 0.82842 0.76903 1.90805 1.47598 1.53232 1.51472 1.45811 1.10372 1.06035 1.72613 1.21629 0.80870 0.94228 1.02734 1.19580 0.88111 0.90504 0.92535 0.90712 1.42497 1.61002 1.15221 1.17192 1.19407 1.24384 0.92011 1.00488 0.90699 1.25295 1.02400 1.00954 0.96522 1.69775 1.46372 1.37860 1.07063 0.85462 0.78131 0.81275 0.76347 1.20143 1.22850 1.21373 1.20830 0.96642 0.99247 0.93692 1.20958 0.94861 0.99616 0.97285 1.21335 0.94446 1.00172 0.99619 1.21384 1.00753 1.00221 0.92553 1.21405 0.94906 0.99844 0.98323 1.21287 0.95168 0.99598 0.98263 1.85418 0.89326 1.10823 1.68028 1.76390 1.27443 1.01587 1.31198 0.92451 0.92083 0.84807 0.79358 0.75185 0.92201 0.89053 0.79157 0.94232 0.88476 0.85576 0.84011 0.83655 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.43 113.37 1.18 1.64 16 2 O -0.30 -6.57 10.51 -93.22 -0.98 -7.55 16 3 C 0.30 7.65 7.36 84.75 0.62 8.27 16 4 C -0.13 -3.20 10.09 22.06 0.22 -2.97 16 5 C -0.19 -5.37 6.74 24.55 0.17 -5.20 16 6 C 0.59 18.90 7.80 86.57 0.68 19.57 16 7 O -0.55 -20.00 16.95 -4.11 -0.07 -20.07 16 8 N -0.70 -21.81 5.38 -466.68 -2.51 -24.32 16 9 C 0.13 4.05 5.21 86.38 0.45 4.50 16 10 C 0.20 6.96 2.65 44.25 0.12 7.08 16 11 H 0.08 2.47 7.94 -2.38 -0.02 2.45 16 12 N -0.72 -31.44 3.79 -326.48 -1.24 -32.67 16 13 C -0.23 -11.47 9.92 84.03 0.83 -10.64 16 14 H 0.08 3.61 7.83 -2.91 -0.02 3.59 16 15 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 16 N -0.96 -54.69 13.06 21.65 0.28 -54.41 16 17 Si 0.96 43.79 29.55 68.60 2.03 45.82 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 C -0.10 -3.38 4.92 -19.87 -0.10 -3.48 16 22 C -0.11 -3.88 9.33 22.27 0.21 -3.67 16 23 C -0.14 -4.16 10.05 22.27 0.22 -3.94 16 24 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 25 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 26 C -0.12 -3.49 9.67 22.27 0.22 -3.28 16 27 S 0.31 8.58 23.27 -56.49 -1.31 7.27 16 28 N -0.52 -14.22 11.03 -175.22 -1.93 -16.15 16 29 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.19 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.41 13.08 7.50 -92.71 -0.70 12.38 16 34 H 0.06 2.04 8.14 -2.38 -0.02 2.03 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.38 18.14 7.80 -92.71 -0.72 17.42 16 37 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.10 3.89 7.71 -2.91 -0.02 3.87 16 39 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.14 3.16 8.04 -2.91 -0.02 3.14 16 Total: -1.00 -63.14 382.67 -0.35 -63.49 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.35 Total: 39.38 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.73 Total: -0.78 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -5.40 Total: -127.55 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.05 Total: -27.62 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 8.58 SS G_CDS: -1.31 Total: 7.27 kcal Total: -63.14 -0.35 -63.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664578107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.172 kcal (2) G-P(sol) polarization free energy of solvation -63.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds