Wall clock time and date at job start Wed Apr 1 2020 04:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99854 * 2 1 4 4 H 1.08000 * 119.99936 * 201.57222 * 3 2 1 5 5 C 1.38811 * 119.99966 * 21.57810 * 3 2 1 6 6 N 1.31619 * 119.99961 * 12.91006 * 5 3 2 7 7 Si 1.86799 * 119.99988 * 192.90507 * 5 3 2 8 8 H 1.48503 * 109.46742 * 94.96305 * 7 5 3 9 9 H 1.48493 * 109.47131 * 214.96269 * 7 5 3 10 10 H 1.48502 * 109.47464 * 334.96682 * 7 5 3 11 11 C 1.46506 * 120.00132 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47120 * 271.55774 * 11 2 1 13 13 C 1.38259 * 119.99627 * 354.98089 * 12 11 2 14 14 C 1.38211 * 119.99599 * 179.97438 * 13 12 11 15 15 C 1.38262 * 120.00079 * 0.02562 * 14 13 12 16 16 C 1.38208 * 120.00006 * 359.97438 * 15 14 13 17 17 C 1.38207 * 119.99909 * 174.70780 * 12 11 2 18 18 C 1.50699 * 120.00219 * 359.97438 * 17 12 11 19 19 N 1.46504 * 109.46927 * 74.11635 * 18 17 12 20 20 C 1.34780 * 119.99933 * 180.02562 * 19 18 17 21 21 O 1.21640 * 120.00065 * 359.97438 * 20 19 18 22 22 C 1.47188 * 119.99728 * 180.02562 * 20 19 18 23 23 C 1.35084 * 122.48421 * 179.73042 * 22 20 19 24 24 S 1.76186 * 108.22123 * 179.90888 * 23 22 20 25 25 C 1.76059 * 90.15380 * 0.29471 * 24 23 22 26 26 O 1.35504 * 125.17822 * 179.86242 * 25 24 23 27 27 N 1.29246 * 109.64289 * 359.82955 * 25 24 23 28 28 H 1.08997 * 109.46606 * 272.58829 * 1 2 3 29 29 H 1.08999 * 109.46996 * 32.58667 * 1 2 3 30 30 H 1.08997 * 109.46795 * 152.59214 * 1 2 3 31 31 H 0.97000 * 119.99953 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46970 * 151.55849 * 11 2 1 33 33 H 1.08998 * 109.46678 * 31.55924 * 11 2 1 34 34 H 1.07994 * 120.00148 * 0.02562 * 13 12 11 35 35 H 1.08000 * 120.00294 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.99885 * 179.97438 * 15 14 13 37 37 H 1.08000 * 120.00012 * 179.97438 * 16 15 14 38 38 H 1.08996 * 109.47699 * 194.11520 * 18 17 12 39 39 H 1.09001 * 109.47329 * 314.11789 * 18 17 12 40 40 H 0.96998 * 119.99927 * 0.02562 * 19 18 17 41 41 H 1.08006 * 125.89145 * 0.02562 * 23 22 20 42 42 H 0.96699 * 113.99905 * 269.95953 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1729 1.2187 -0.3439 5 6 1.5285 2.3459 0.4421 6 7 0.3867 2.2740 1.0928 7 14 2.3133 4.0090 0.1137 8 1 1.7358 4.5930 -1.1236 9 1 2.0489 4.9160 1.2593 10 1 3.7789 3.8400 -0.0561 11 6 2.1976 -1.2688 -0.0006 12 6 2.4153 -1.7237 1.4195 13 6 2.0342 -0.9117 2.4716 14 6 2.2334 -1.3292 3.7740 15 6 2.8142 -2.5586 4.0247 16 6 3.1952 -3.3703 2.9730 17 6 2.9908 -2.9551 1.6701 18 6 3.4000 -3.8430 0.5233 19 7 4.6141 -3.3088 -0.0987 20 6 5.1665 -3.9427 -1.1521 21 8 4.6573 -4.9585 -1.5860 22 6 6.3866 -3.4062 -1.7767 23 6 6.9849 -4.0033 -2.8304 24 16 8.4000 -3.0513 -3.2725 25 6 8.0534 -1.9213 -1.9676 26 8 8.7913 -0.8251 -1.6675 27 7 6.9875 -2.2960 -1.3400 28 1 -0.3632 0.0464 1.0266 29 1 -0.3633 0.8659 -0.5535 30 1 -0.3633 -0.9123 -0.4731 31 1 -0.0475 3.0847 1.4015 32 1 3.1619 -1.1313 -0.4900 33 1 1.6209 -2.0210 -0.5388 34 1 1.5801 0.0483 2.2758 35 1 1.9353 -0.6952 4.5960 36 1 2.9703 -2.8847 5.0424 37 1 3.6493 -4.3304 3.1688 38 1 3.5945 -4.8493 0.8942 39 1 2.5983 -3.8764 -0.2144 40 1 5.0204 -2.4989 0.2475 41 1 6.6521 -4.9072 -3.3189 42 1 9.4994 -0.9902 -1.0300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733680295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:04 Heat of formation + Delta-G solvation = 32.618817 kcal Electronic energy + Delta-G solvation = -27702.226305 eV Core-core repulsion = 23775.880665 eV Total energy + Delta-G solvation = -3926.345640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61343 -39.39707 -38.67679 -37.32858 -35.53943 -34.86176 -31.93917 -31.06602 -30.24818 -29.85289 -26.95989 -26.05989 -25.57279 -24.71360 -22.52104 -22.13161 -20.80388 -20.07710 -19.91899 -19.59894 -18.19509 -16.92247 -16.71570 -16.27788 -15.88966 -15.64736 -15.43861 -14.83896 -14.69252 -14.44903 -14.25042 -13.76661 -13.60593 -13.47694 -13.12966 -12.88359 -12.54562 -12.33746 -12.31391 -12.13491 -12.11088 -11.54484 -11.28221 -10.90043 -10.74852 -10.49429 -10.45803 -10.31482 -10.24833 -10.00486 -9.98341 -9.93044 -9.84560 -9.25579 -8.93177 -8.55291 -8.27791 -7.98856 -6.83511 -5.75634 -3.20709 0.09684 0.61821 1.12055 1.66399 1.76102 2.03642 3.04844 3.22176 3.38198 3.44135 3.45486 3.46841 4.36182 4.46528 4.49934 4.86649 4.91613 5.03238 5.27781 5.34821 5.43237 5.47943 5.58020 5.62609 5.80575 5.85452 6.04959 6.29632 6.35013 6.44090 6.50534 6.60501 6.71757 6.77013 6.78586 6.94946 7.03154 7.24155 7.39204 7.42460 7.59075 7.71877 7.73378 7.82764 8.14377 8.37021 9.21963 9.83484 10.32269 11.29456 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.003689 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.783022 B = 7588.927915 C = 9436.916430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.251 4.251 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.908 5.908 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.181 3.819 12 C -0.074 4.074 13 C -0.085 4.085 14 C -0.121 4.121 15 C -0.141 4.141 16 C -0.114 4.114 17 C -0.129 4.129 18 C 0.167 3.833 19 N -0.698 5.698 20 C 0.591 3.409 21 O -0.538 6.538 22 C 0.029 3.971 23 C -0.167 4.167 24 S 0.098 5.902 25 C 0.262 3.738 26 O -0.428 6.428 27 N -0.456 5.456 28 H 0.027 0.973 29 H 0.049 0.951 30 H -0.004 1.004 31 H 0.253 0.747 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.162 0.838 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.414 0.586 41 H 0.196 0.804 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.110 -12.867 -2.395 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.321 5.321 3 C -0.380 4.380 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.554 5.554 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.053 3.947 12 C -0.078 4.078 13 C -0.102 4.102 14 C -0.139 4.139 15 C -0.159 4.159 16 C -0.132 4.132 17 C -0.130 4.130 18 C 0.045 3.955 19 N -0.349 5.349 20 C 0.374 3.626 21 O -0.416 6.416 22 C -0.103 4.103 23 C -0.308 4.308 24 S 0.345 5.655 25 C -0.059 4.059 26 O -0.234 6.234 27 N -0.183 5.183 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.014 0.986 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.179 0.821 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.250 0.750 41 H 0.213 0.787 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 14.884 -12.833 -3.338 19.934 hybrid contribution 0.233 1.030 0.956 1.425 sum 15.117 -11.803 -2.382 19.327 Atomic orbital electron populations 1.20835 0.82294 0.96011 0.99124 1.43958 1.01966 1.00471 1.85670 1.19226 0.97505 0.85089 1.36221 0.91368 1.24937 0.97718 0.98287 0.98509 1.70051 1.18248 1.27004 1.40062 0.86266 0.78867 0.84281 0.77367 1.21597 1.21785 1.20450 1.19920 0.96356 0.88366 0.90013 1.21288 0.94680 0.92173 0.99629 1.21771 0.96315 1.01408 0.90732 1.21289 0.99218 0.95950 0.97434 1.20963 1.01398 0.95372 0.98130 1.20808 1.00956 0.99365 0.92104 1.19610 1.03685 0.96110 0.93572 1.20184 0.86360 0.95748 0.93243 1.45967 1.27820 1.29653 1.31424 1.17018 0.82025 0.83433 0.80114 1.90822 1.62727 1.24463 1.63558 1.20005 0.99513 0.92813 0.97963 1.27130 0.98641 1.04959 1.00084 1.85319 1.25535 1.18837 1.35774 1.25003 0.93182 0.92141 0.95564 1.84910 1.47169 1.26553 1.64809 1.66760 1.08084 1.13412 1.30002 0.95435 0.93245 0.98576 0.93700 0.92188 0.93100 0.82101 0.86882 0.87110 0.87029 0.90909 0.90283 0.74956 0.78712 0.73268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 8.78 59.85 0.53 4.46 16 2 N -0.60 -14.63 1.75 -182.49 -0.32 -14.95 16 3 C -0.25 -6.69 8.85 -15.06 -0.13 -6.83 16 4 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 5 C 0.00 0.10 5.09 -17.43 -0.09 0.01 16 6 N -0.91 -25.32 10.64 55.49 0.59 -24.73 16 7 Si 0.90 21.68 29.57 -169.99 -5.03 16.65 16 8 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.18 3.74 5.03 -5.19 -0.03 3.72 16 12 C -0.07 -1.43 5.88 -104.63 -0.61 -2.04 16 13 C -0.08 -1.75 9.18 -39.58 -0.36 -2.12 16 14 C -0.12 -2.14 10.05 -39.58 -0.40 -2.53 16 15 C -0.14 -2.15 10.05 -39.58 -0.40 -2.54 16 16 C -0.11 -1.69 9.67 -39.58 -0.38 -2.07 16 17 C -0.13 -2.08 5.25 -104.63 -0.55 -2.63 16 18 C 0.17 2.43 5.15 -5.19 -0.03 2.40 16 19 N -0.70 -10.18 5.03 -62.64 -0.31 -10.49 16 20 C 0.59 8.75 7.79 -12.62 -0.10 8.65 16 21 O -0.54 -8.96 16.67 5.24 0.09 -8.87 16 22 C 0.03 0.37 6.67 -84.60 -0.56 -0.19 16 23 C -0.17 -1.70 10.84 29.61 0.32 -1.38 16 24 S 0.10 0.81 23.42 -107.50 -2.52 -1.71 16 25 C 0.26 2.76 8.88 51.67 0.46 3.21 16 26 O -0.43 -3.72 13.64 -18.21 -0.25 -3.97 16 27 N -0.46 -5.95 10.01 -11.34 -0.11 -6.06 16 28 H 0.03 0.71 7.26 -51.93 -0.38 0.33 16 29 H 0.05 1.29 7.06 -51.93 -0.37 0.93 16 30 H 0.00 -0.09 7.88 -51.93 -0.41 -0.50 16 31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.06 1.25 7.61 -51.93 -0.40 0.85 16 33 H 0.05 1.00 7.13 -51.93 -0.37 0.63 16 34 H 0.16 4.00 5.99 -52.49 -0.31 3.69 16 35 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.11 1.38 8.00 -52.49 -0.42 0.96 16 38 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 39 H 0.08 1.20 7.18 -51.93 -0.37 0.83 16 40 H 0.41 6.20 7.94 -40.82 -0.32 5.87 16 41 H 0.20 1.67 8.01 -52.48 -0.42 1.25 16 42 H 0.41 1.22 9.06 45.56 0.41 1.63 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -31.75 372.52 -8.75 -40.50 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.16 Total: 7.91 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.34 Total: 0.12 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.16 Total: -56.24 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.16 Total: -12.84 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.52 Total: -1.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.75 -8.75 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733680295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.116 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds