Wall clock time and date at job start Wed Apr 1 2020 04:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99854 * 2 1 4 4 H 1.08000 * 119.99936 * 201.57222 * 3 2 1 5 5 C 1.38811 * 119.99966 * 21.57810 * 3 2 1 6 6 N 1.31619 * 119.99961 * 12.91006 * 5 3 2 7 7 Si 1.86799 * 119.99988 * 192.90507 * 5 3 2 8 8 H 1.48503 * 109.46742 * 94.96305 * 7 5 3 9 9 H 1.48493 * 109.47131 * 214.96269 * 7 5 3 10 10 H 1.48502 * 109.47464 * 334.96682 * 7 5 3 11 11 C 1.46506 * 120.00132 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47120 * 271.55774 * 11 2 1 13 13 C 1.38259 * 119.99627 * 354.98089 * 12 11 2 14 14 C 1.38211 * 119.99599 * 179.97438 * 13 12 11 15 15 C 1.38262 * 120.00079 * 0.02562 * 14 13 12 16 16 C 1.38208 * 120.00006 * 359.97438 * 15 14 13 17 17 C 1.38207 * 119.99909 * 174.70780 * 12 11 2 18 18 C 1.50699 * 120.00219 * 359.97438 * 17 12 11 19 19 N 1.46504 * 109.46927 * 74.11635 * 18 17 12 20 20 C 1.34780 * 119.99933 * 180.02562 * 19 18 17 21 21 O 1.21640 * 120.00065 * 359.97438 * 20 19 18 22 22 C 1.47188 * 119.99728 * 180.02562 * 20 19 18 23 23 C 1.35084 * 122.48421 * 179.73042 * 22 20 19 24 24 S 1.76186 * 108.22123 * 179.90888 * 23 22 20 25 25 C 1.76059 * 90.15380 * 0.29471 * 24 23 22 26 26 O 1.35504 * 125.17822 * 179.86242 * 25 24 23 27 27 N 1.29246 * 109.64289 * 359.82955 * 25 24 23 28 28 H 1.08997 * 109.46606 * 272.58829 * 1 2 3 29 29 H 1.08999 * 109.46996 * 32.58667 * 1 2 3 30 30 H 1.08997 * 109.46795 * 152.59214 * 1 2 3 31 31 H 0.97000 * 119.99953 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46970 * 151.55849 * 11 2 1 33 33 H 1.08998 * 109.46678 * 31.55924 * 11 2 1 34 34 H 1.07994 * 120.00148 * 0.02562 * 13 12 11 35 35 H 1.08000 * 120.00294 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.99885 * 179.97438 * 15 14 13 37 37 H 1.08000 * 120.00012 * 179.97438 * 16 15 14 38 38 H 1.08996 * 109.47699 * 194.11520 * 18 17 12 39 39 H 1.09001 * 109.47329 * 314.11789 * 18 17 12 40 40 H 0.96998 * 119.99927 * 0.02562 * 19 18 17 41 41 H 1.08006 * 125.89145 * 0.02562 * 23 22 20 42 42 H 0.96699 * 113.99905 * 269.95953 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1729 1.2187 -0.3439 5 6 1.5285 2.3459 0.4421 6 7 0.3867 2.2740 1.0928 7 14 2.3133 4.0090 0.1137 8 1 1.7358 4.5930 -1.1236 9 1 2.0489 4.9160 1.2593 10 1 3.7789 3.8400 -0.0561 11 6 2.1976 -1.2688 -0.0006 12 6 2.4153 -1.7237 1.4195 13 6 2.0342 -0.9117 2.4716 14 6 2.2334 -1.3292 3.7740 15 6 2.8142 -2.5586 4.0247 16 6 3.1952 -3.3703 2.9730 17 6 2.9908 -2.9551 1.6701 18 6 3.4000 -3.8430 0.5233 19 7 4.6141 -3.3088 -0.0987 20 6 5.1665 -3.9427 -1.1521 21 8 4.6573 -4.9585 -1.5860 22 6 6.3866 -3.4062 -1.7767 23 6 6.9849 -4.0033 -2.8304 24 16 8.4000 -3.0513 -3.2725 25 6 8.0534 -1.9213 -1.9676 26 8 8.7913 -0.8251 -1.6675 27 7 6.9875 -2.2960 -1.3400 28 1 -0.3632 0.0464 1.0266 29 1 -0.3633 0.8659 -0.5535 30 1 -0.3633 -0.9123 -0.4731 31 1 -0.0475 3.0847 1.4015 32 1 3.1619 -1.1313 -0.4900 33 1 1.6209 -2.0210 -0.5388 34 1 1.5801 0.0483 2.2758 35 1 1.9353 -0.6952 4.5960 36 1 2.9703 -2.8847 5.0424 37 1 3.6493 -4.3304 3.1688 38 1 3.5945 -4.8493 0.8942 39 1 2.5983 -3.8764 -0.2144 40 1 5.0204 -2.4989 0.2475 41 1 6.6521 -4.9072 -3.3189 42 1 9.4994 -0.9902 -1.0300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733680295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:03 Heat of formation + Delta-G solvation = 9.332212 kcal Electronic energy + Delta-G solvation = -27703.236088 eV Core-core repulsion = 23775.880665 eV Total energy + Delta-G solvation = -3927.355423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58218 -40.58527 -39.76806 -38.09944 -37.38301 -36.05653 -33.73511 -32.40667 -31.49351 -31.10614 -28.26866 -27.87836 -27.22640 -25.71107 -23.85802 -23.47217 -22.24854 -21.42401 -21.00518 -20.40322 -19.04591 -18.73651 -17.92244 -17.24994 -17.13325 -16.91267 -16.70571 -16.31827 -15.89330 -15.65246 -15.50470 -15.30674 -14.96222 -14.77596 -14.61876 -14.31504 -13.97783 -13.62892 -13.46147 -13.30029 -13.10233 -13.01150 -12.85810 -12.83303 -12.57869 -12.31503 -12.06223 -11.95522 -11.82222 -11.62938 -11.43314 -10.81406 -10.68218 -10.62278 -10.24537 -9.86199 -9.62104 -9.39234 -8.84061 -7.82846 -5.29447 -0.67381 -0.10125 0.30499 0.46166 0.67632 0.75368 1.44340 1.46130 1.54291 2.17257 2.20892 2.48789 2.50182 3.05402 3.31654 3.59032 3.65775 3.77263 4.08118 4.09303 4.13890 4.20622 4.38354 4.40926 4.56483 4.66216 4.73006 4.76910 4.80487 4.82496 5.03482 5.22410 5.28251 5.31279 5.38791 5.59953 5.64951 5.69437 5.85620 5.98553 6.11160 6.27409 6.34121 6.34810 6.51521 7.03207 7.15502 7.84750 8.29288 9.20614 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.003689 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.783022 B = 7588.927915 C = 9436.916430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.609 5.609 3 C -0.254 4.254 4 H 0.062 0.938 5 C -0.042 4.042 6 N -0.931 5.931 7 Si 0.958 3.042 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.274 1.274 11 C 0.186 3.814 12 C -0.090 4.090 13 C -0.115 4.115 14 C -0.129 4.129 15 C -0.128 4.128 16 C -0.103 4.103 17 C -0.119 4.119 18 C 0.171 3.829 19 N -0.698 5.698 20 C 0.591 3.409 21 O -0.563 6.563 22 C 0.001 3.999 23 C -0.166 4.166 24 S 0.176 5.824 25 C 0.250 3.750 26 O -0.438 6.438 27 N -0.492 5.492 28 H 0.006 0.994 29 H 0.023 0.977 30 H 0.021 0.979 31 H 0.248 0.752 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.411 0.589 41 H 0.210 0.790 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.532 -14.756 -2.390 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.332 5.332 3 C -0.384 4.384 4 H 0.080 0.920 5 C -0.237 4.237 6 N -0.577 5.577 7 Si 0.788 3.212 8 H -0.216 1.216 9 H -0.220 1.220 10 H -0.199 1.199 11 C 0.060 3.940 12 C -0.093 4.093 13 C -0.133 4.133 14 C -0.148 4.148 15 C -0.145 4.145 16 C -0.122 4.122 17 C -0.120 4.120 18 C 0.049 3.951 19 N -0.348 5.348 20 C 0.375 3.625 21 O -0.443 6.443 22 C -0.130 4.130 23 C -0.308 4.308 24 S 0.425 5.575 25 C -0.070 4.070 26 O -0.249 6.249 27 N -0.219 5.219 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.248 0.752 41 H 0.227 0.773 42 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 17.354 -14.736 -3.331 23.008 hybrid contribution -0.392 1.537 0.928 1.838 sum 16.962 -13.198 -2.403 21.626 Atomic orbital electron populations 1.20553 0.82572 0.95937 0.97586 1.44060 1.02032 1.01283 1.85808 1.19353 0.97311 0.86239 1.35519 0.92017 1.25555 0.98404 1.00985 0.98795 1.70200 1.19334 1.27134 1.41059 0.85378 0.78292 0.80746 0.76820 1.21590 1.21982 1.19857 1.19896 0.95705 0.86960 0.91418 1.20974 0.96754 0.93704 0.97913 1.21440 0.98687 1.00342 0.92857 1.21399 0.99696 0.97446 0.96211 1.21332 0.99242 0.93784 1.00191 1.21236 0.99391 1.00512 0.91021 1.19687 1.02463 0.94754 0.95054 1.20159 0.86244 0.96222 0.92498 1.45944 1.27698 1.29542 1.31611 1.17287 0.82445 0.83016 0.79729 1.90793 1.63717 1.25507 1.64242 1.19760 0.99804 0.93947 0.99507 1.27458 0.99060 1.05264 0.98975 1.85072 1.23032 1.16239 1.33168 1.25220 0.92983 0.92552 0.96240 1.84862 1.47846 1.26376 1.65811 1.66683 1.09451 1.14086 1.31688 0.97611 0.95801 0.96065 0.94284 0.92722 0.92261 0.86825 0.86240 0.83392 0.83254 0.88914 0.91212 0.75249 0.77348 0.70615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.03 8.78 127.77 1.12 10.15 16 2 N -0.61 -30.91 1.75 -731.29 -1.28 -32.19 16 3 C -0.25 -14.03 8.85 84.03 0.74 -13.29 16 4 H 0.06 3.43 7.84 -2.91 -0.02 3.40 16 5 C -0.04 -2.34 5.09 84.86 0.43 -1.90 16 6 N -0.93 -54.11 10.64 21.65 0.23 -53.88 16 7 Si 0.96 45.67 29.57 68.60 2.03 47.70 16 8 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 9 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 C 0.19 7.90 5.03 85.63 0.43 8.33 16 12 C -0.09 -3.51 5.88 -19.87 -0.12 -3.63 16 13 C -0.11 -4.93 9.18 22.27 0.20 -4.72 16 14 C -0.13 -4.52 10.05 22.27 0.22 -4.29 16 15 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 16 C -0.10 -2.71 9.67 22.27 0.22 -2.50 16 17 C -0.12 -3.65 5.25 -19.87 -0.10 -3.76 16 18 C 0.17 4.74 5.15 85.63 0.44 5.18 16 19 N -0.70 -19.93 5.03 -470.32 -2.36 -22.29 16 20 C 0.59 17.17 7.79 86.59 0.67 17.85 16 21 O -0.56 -18.36 16.67 -4.16 -0.07 -18.43 16 22 C 0.00 0.03 6.67 40.50 0.27 0.30 16 23 C -0.17 -3.09 10.84 67.09 0.73 -2.36 16 24 S 0.18 2.44 23.42 -56.49 -1.32 1.11 16 25 C 0.25 4.88 8.88 130.62 1.16 6.04 16 26 O -0.44 -6.93 13.64 -88.06 -1.20 -8.13 16 27 N -0.49 -12.49 10.01 -304.23 -3.05 -15.53 16 28 H 0.01 0.31 7.26 -2.39 -0.02 0.29 16 29 H 0.02 1.29 7.06 -2.39 -0.02 1.27 16 30 H 0.02 0.93 7.88 -2.39 -0.02 0.92 16 31 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.05 2.34 7.61 -2.38 -0.02 2.32 16 33 H 0.06 2.36 7.13 -2.39 -0.02 2.34 16 34 H 0.11 6.02 5.99 -2.91 -0.02 6.00 16 35 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.15 2.88 8.00 -2.91 -0.02 2.86 16 38 H 0.09 2.22 7.95 -2.39 -0.02 2.20 16 39 H 0.07 2.07 7.18 -2.39 -0.02 2.06 16 40 H 0.41 12.26 7.94 -92.71 -0.74 11.53 16 41 H 0.21 3.15 8.01 -2.91 -0.02 3.12 16 42 H 0.43 1.80 9.06 -74.06 -0.67 1.13 16 Total: -1.00 -71.39 372.52 -0.69 -72.08 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.32 Total: 21.45 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 6.65 Total: 8.12 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -6.46 Total: -123.89 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -1.27 Total: -26.57 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.32 Total: 1.11 kcal Total: -71.39 -0.69 -72.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733680295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.413 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds