Wall clock time and date at job start Wed Apr 1 2020 04:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35968 * 116.99624 * 2 1 4 4 C 1.37569 * 120.82112 * 180.02562 * 3 2 1 5 5 C 1.38035 * 114.24917 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.76124 * 180.02562 * 5 4 3 7 7 O 1.21629 * 120.00189 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00047 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99728 * 179.97438 * 8 6 5 10 10 C 1.50707 * 109.46701 * 179.97438 * 9 8 6 11 11 C 1.38232 * 120.00027 * 269.73028 * 10 9 8 12 12 C 1.38237 * 119.99857 * 179.77057 * 11 10 9 13 13 C 1.38234 * 120.00126 * 0.47942 * 12 11 10 14 14 C 1.50693 * 120.00457 * 179.76916 * 13 12 11 15 15 N 1.46498 * 109.47375 * 270.02585 * 14 13 12 16 16 C 1.36933 * 120.00136 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00065 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00234 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99972 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46967 * 60.00434 * 20 18 16 22 22 H 1.48500 * 109.46834 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47360 * 300.00163 * 20 18 16 24 24 C 1.38243 * 119.99890 * 359.79555 * 13 12 11 25 25 C 1.38229 * 119.99742 * 90.00563 * 10 9 8 26 26 S 1.77239 * 104.48148 * 359.97438 * 5 4 3 27 27 N 1.30357 * 120.82839 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47156 * 300.00498 * 1 2 3 29 29 H 1.08997 * 109.47023 * 60.00447 * 1 2 3 30 30 H 1.09004 * 109.46710 * 180.02562 * 1 2 3 31 31 H 1.08004 * 122.87524 * 0.03450 * 4 3 2 32 32 H 0.96995 * 119.99507 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.47563 * 300.00156 * 9 8 6 34 34 H 1.08996 * 109.47127 * 60.00517 * 9 8 6 35 35 H 1.08001 * 120.00286 * 359.97438 * 11 10 9 36 36 H 1.07999 * 120.00219 * 180.25164 * 12 11 10 37 37 H 1.08997 * 109.46910 * 30.02403 * 14 13 12 38 38 H 1.09002 * 109.47304 * 150.01950 * 14 13 12 39 39 H 0.96995 * 120.00211 * 359.97438 * 15 14 13 40 40 H 0.96996 * 120.00077 * 179.97438 * 19 18 16 41 41 H 1.07990 * 120.00139 * 179.97438 * 24 13 12 42 42 H 1.08008 * 120.00266 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9006 2.5969 0.0001 6 6 5.3049 3.0353 -0.0007 7 8 6.1993 2.2110 -0.0017 8 7 5.6004 4.3503 -0.0004 9 6 6.9988 4.7868 -0.0007 10 6 7.0549 6.2928 -0.0009 11 6 7.0861 6.9831 -1.1982 12 6 7.1328 8.3647 -1.1984 13 6 7.1583 9.0556 -0.0013 14 6 7.2144 10.5615 -0.0015 15 7 8.6128 10.9981 -0.0018 16 6 8.9129 12.3341 -0.0025 17 1 8.1188 13.0660 -0.0032 18 6 10.2380 12.7478 -0.0023 19 7 11.2059 11.8559 -0.0020 20 14 10.6474 14.5705 -0.0040 21 1 10.0724 15.2080 1.2076 22 1 12.1219 14.7465 -0.0041 23 1 10.0735 15.2057 -1.2174 24 6 7.1328 8.3650 1.1960 25 6 7.0809 6.9836 1.1961 26 16 2.4471 3.6111 0.0006 27 7 1.3521 2.3149 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0643 0.4373 -0.0015 32 1 4.8871 5.0076 0.0007 33 1 7.4990 4.4043 0.8890 34 1 7.4984 4.4049 -0.8910 35 1 7.0707 6.4432 -2.1334 36 1 7.1530 8.9042 -2.1337 37 1 6.7143 10.9436 -0.8913 38 1 6.7145 10.9438 0.8886 39 1 9.3261 10.3408 -0.0016 40 1 12.1318 12.1450 -0.0022 41 1 7.1531 8.9047 2.1312 42 1 7.0606 6.4441 2.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753591451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:05 Heat of formation + Delta-G solvation = 14.536581 kcal Electronic energy + Delta-G solvation = -25478.384444 eV Core-core repulsion = 21551.254699 eV Total energy + Delta-G solvation = -3927.129745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.75419 -40.10807 -39.15040 -36.95933 -35.68631 -34.44921 -32.38712 -31.73208 -30.77758 -30.24624 -28.61758 -27.34330 -25.37408 -24.14343 -22.55297 -22.52824 -21.96049 -20.71192 -20.30139 -19.18608 -18.23990 -17.33156 -16.99396 -16.75993 -16.36825 -15.91039 -15.63167 -15.20024 -15.05554 -14.85762 -14.59358 -14.30571 -13.92355 -13.87605 -13.41858 -13.27692 -13.21683 -12.97250 -12.58986 -12.39889 -12.12014 -11.95522 -11.91179 -11.63387 -11.36911 -11.11537 -10.88995 -10.76852 -10.69759 -10.58914 -10.26031 -10.11948 -9.80168 -9.52942 -8.92838 -8.91445 -8.74657 -8.51959 -6.97775 -5.79303 -3.09506 -0.38383 0.63544 1.00990 1.29703 1.58537 1.70940 2.38866 2.59257 2.91611 3.42319 3.46613 3.47881 3.91354 4.08141 4.39766 4.56943 4.59531 4.63380 4.73013 4.73930 4.87256 5.03745 5.12581 5.17702 5.24761 5.32699 5.46442 5.53586 5.56483 5.68625 5.78571 5.88252 6.09964 6.11508 6.15431 6.44046 6.47796 6.54638 6.56734 6.61995 6.95225 7.05267 7.16072 7.60238 7.65631 8.38290 9.49906 10.05429 10.41105 11.42991 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.001589 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.484874 B =17613.908967 C =18175.304295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.294 6.294 3 C 0.305 3.695 4 C -0.126 4.126 5 C -0.183 4.183 6 C 0.593 3.407 7 O -0.514 6.514 8 N -0.712 5.712 9 C 0.167 3.833 10 C -0.130 4.130 11 C -0.102 4.102 12 C -0.106 4.106 13 C -0.061 4.061 14 C 0.183 3.817 15 N -0.726 5.726 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.106 4.106 25 C -0.102 4.102 26 S 0.292 5.708 27 N -0.508 5.508 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.179 0.821 32 H 0.403 0.597 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.125 0.875 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.761 -23.337 0.008 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.200 6.200 3 C 0.092 3.908 4 C -0.164 4.164 5 C -0.314 4.314 6 C 0.376 3.624 7 O -0.390 6.390 8 N -0.363 5.363 9 C 0.045 3.955 10 C -0.131 4.131 11 C -0.120 4.120 12 C -0.125 4.125 13 C -0.062 4.062 14 C 0.056 3.944 15 N -0.371 5.371 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.125 4.125 25 C -0.120 4.120 26 S 0.442 5.558 27 N -0.350 5.350 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.197 0.803 32 H 0.238 0.762 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.143 0.857 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.455 -22.407 0.007 31.023 hybrid contribution 0.920 -0.223 0.000 0.947 sum -20.535 -22.630 0.007 30.558 Atomic orbital electron populations 1.23022 0.76422 1.03846 1.02702 1.86327 1.23220 1.22335 1.88090 1.19923 0.89807 0.85366 0.95707 1.20785 0.92383 0.98625 1.04618 1.25998 0.99357 0.97858 1.08223 1.16653 0.85326 0.82977 0.77457 1.90875 1.46651 1.52519 1.48959 1.46011 1.09909 1.06000 1.74396 1.20281 0.80822 0.90780 1.03624 1.19620 1.05800 0.93652 0.93985 1.21003 0.99646 0.94304 0.97055 1.21136 0.99379 0.93682 0.98289 1.20420 0.95621 0.97334 0.92798 1.19716 0.89164 0.86663 0.98810 1.42318 1.00118 1.05069 1.89577 1.19193 0.91614 0.83388 1.43388 0.91104 1.24759 0.95593 0.97647 1.02737 1.69661 0.98881 1.32127 1.57247 0.86246 0.77066 0.84842 0.77876 1.21206 1.21640 1.21212 1.21137 0.99374 0.93687 0.98286 1.21005 0.99657 0.94304 0.97057 1.85082 0.89828 1.11922 1.69000 1.76470 1.26625 1.01062 1.30817 0.91978 0.91974 0.87806 0.80340 0.76200 0.90007 0.90011 0.86193 0.85709 0.95348 0.95352 0.78044 0.93383 0.85709 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.43 101.05 1.05 1.24 16 2 O -0.29 -2.39 10.52 -19.64 -0.21 -2.59 16 3 C 0.31 2.72 7.36 -18.42 -0.14 2.59 16 4 C -0.13 -1.09 10.09 -39.90 -0.40 -1.49 16 5 C -0.18 -1.60 6.74 -36.06 -0.24 -1.84 16 6 C 0.59 6.02 7.80 -12.66 -0.10 5.92 16 7 O -0.51 -6.83 16.95 5.25 0.09 -6.74 16 8 N -0.71 -6.23 5.54 -62.66 -0.35 -6.57 16 9 C 0.17 1.62 5.80 -5.19 -0.03 1.59 16 10 C -0.13 -1.46 5.25 -104.62 -0.55 -2.01 16 11 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 12 C -0.11 -1.55 9.70 -39.58 -0.38 -1.93 16 13 C -0.06 -1.00 5.25 -104.62 -0.55 -1.55 16 14 C 0.18 3.61 6.38 -5.20 -0.03 3.57 16 15 N -0.73 -18.22 5.59 -61.09 -0.34 -18.56 16 16 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 20 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.11 -1.55 9.70 -39.58 -0.38 -1.93 16 25 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 26 S 0.29 2.26 23.27 -107.50 -2.50 -0.24 16 27 N -0.51 -4.70 11.03 29.19 0.32 -4.38 16 28 H 0.06 0.33 8.12 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.40 2.92 7.82 -40.82 -0.32 2.60 16 33 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.39 10.34 7.66 -40.82 -0.31 10.02 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -32.82 384.88 -9.49 -42.31 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.24 Total: 7.55 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.77 Total: -6.39 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.36 Total: -56.81 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.12 Total: -9.34 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.50 Total: -0.24 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.82 -9.49 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753591451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.851 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds