Wall clock time and date at job start Wed Apr 1 2020 04:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35968 * 116.99624 * 2 1 4 4 C 1.37569 * 120.82112 * 180.02562 * 3 2 1 5 5 C 1.38035 * 114.24917 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.76124 * 180.02562 * 5 4 3 7 7 O 1.21629 * 120.00189 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00047 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99728 * 179.97438 * 8 6 5 10 10 C 1.50707 * 109.46701 * 179.97438 * 9 8 6 11 11 C 1.38232 * 120.00027 * 269.73028 * 10 9 8 12 12 C 1.38237 * 119.99857 * 179.77057 * 11 10 9 13 13 C 1.38234 * 120.00126 * 0.47942 * 12 11 10 14 14 C 1.50693 * 120.00457 * 179.76916 * 13 12 11 15 15 N 1.46498 * 109.47375 * 270.02585 * 14 13 12 16 16 C 1.36933 * 120.00136 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00065 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00234 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99972 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46967 * 60.00434 * 20 18 16 22 22 H 1.48500 * 109.46834 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47360 * 300.00163 * 20 18 16 24 24 C 1.38243 * 119.99890 * 359.79555 * 13 12 11 25 25 C 1.38229 * 119.99742 * 90.00563 * 10 9 8 26 26 S 1.77239 * 104.48148 * 359.97438 * 5 4 3 27 27 N 1.30357 * 120.82839 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47156 * 300.00498 * 1 2 3 29 29 H 1.08997 * 109.47023 * 60.00447 * 1 2 3 30 30 H 1.09004 * 109.46710 * 180.02562 * 1 2 3 31 31 H 1.08004 * 122.87524 * 0.03450 * 4 3 2 32 32 H 0.96995 * 119.99507 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.47563 * 300.00156 * 9 8 6 34 34 H 1.08996 * 109.47127 * 60.00517 * 9 8 6 35 35 H 1.08001 * 120.00286 * 359.97438 * 11 10 9 36 36 H 1.07999 * 120.00219 * 180.25164 * 12 11 10 37 37 H 1.08997 * 109.46910 * 30.02403 * 14 13 12 38 38 H 1.09002 * 109.47304 * 150.01950 * 14 13 12 39 39 H 0.96995 * 120.00211 * 359.97438 * 15 14 13 40 40 H 0.96996 * 120.00077 * 179.97438 * 19 18 16 41 41 H 1.07990 * 120.00139 * 179.97438 * 24 13 12 42 42 H 1.08008 * 120.00266 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9006 2.5969 0.0001 6 6 5.3049 3.0353 -0.0007 7 8 6.1993 2.2110 -0.0017 8 7 5.6004 4.3503 -0.0004 9 6 6.9988 4.7868 -0.0007 10 6 7.0549 6.2928 -0.0009 11 6 7.0861 6.9831 -1.1982 12 6 7.1328 8.3647 -1.1984 13 6 7.1583 9.0556 -0.0013 14 6 7.2144 10.5615 -0.0015 15 7 8.6128 10.9981 -0.0018 16 6 8.9129 12.3341 -0.0025 17 1 8.1188 13.0660 -0.0032 18 6 10.2380 12.7478 -0.0023 19 7 11.2059 11.8559 -0.0020 20 14 10.6474 14.5705 -0.0040 21 1 10.0724 15.2080 1.2076 22 1 12.1219 14.7465 -0.0041 23 1 10.0735 15.2057 -1.2174 24 6 7.1328 8.3650 1.1960 25 6 7.0809 6.9836 1.1961 26 16 2.4471 3.6111 0.0006 27 7 1.3521 2.3149 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0643 0.4373 -0.0015 32 1 4.8871 5.0076 0.0007 33 1 7.4990 4.4043 0.8890 34 1 7.4984 4.4049 -0.8910 35 1 7.0707 6.4432 -2.1334 36 1 7.1530 8.9042 -2.1337 37 1 6.7143 10.9436 -0.8913 38 1 6.7145 10.9438 0.8886 39 1 9.3261 10.3408 -0.0016 40 1 12.1318 12.1450 -0.0022 41 1 7.1531 8.9047 2.1312 42 1 7.0606 6.4441 2.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753591451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:04 Heat of formation + Delta-G solvation = -8.791109 kcal Electronic energy + Delta-G solvation = -25479.396008 eV Core-core repulsion = 21551.254699 eV Total energy + Delta-G solvation = -3928.141309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41918 -40.91933 -40.17153 -37.58770 -36.94600 -35.86629 -33.81703 -32.67144 -31.82745 -31.70550 -29.24813 -28.45667 -26.53014 -25.34105 -24.05559 -23.60652 -22.74062 -21.74323 -21.13677 -19.87779 -19.31737 -18.85314 -17.77559 -17.34711 -17.15993 -16.90548 -16.80843 -16.43475 -16.03867 -15.97166 -15.69016 -15.25027 -15.17401 -14.84380 -14.54787 -14.50557 -14.31380 -14.05832 -13.70225 -13.42310 -13.10220 -13.04431 -12.95643 -12.72368 -12.57981 -12.23303 -12.15521 -12.00994 -11.94798 -11.88855 -11.73152 -11.49124 -10.96469 -10.95821 -10.30601 -9.79410 -9.64923 -9.50957 -9.02334 -7.94926 -5.25164 -1.06355 -0.00411 0.23312 0.37881 0.53273 1.03536 1.48431 1.51483 1.57729 1.69932 1.83621 2.25638 2.56220 2.88454 3.38244 3.40079 3.61751 3.77166 3.91940 4.05495 4.08044 4.16397 4.26012 4.28599 4.30624 4.34369 4.52357 4.58439 4.69448 4.71446 4.71470 4.91625 4.92238 4.96436 5.09017 5.10986 5.22369 5.47562 5.48388 5.60665 5.83898 5.91259 6.08183 6.21897 6.25663 6.84796 7.32585 8.05825 8.30759 9.28018 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.001589 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.484874 B =17613.908967 C =18175.304295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.301 3.699 4 C -0.128 4.128 5 C -0.190 4.190 6 C 0.598 3.402 7 O -0.548 6.548 8 N -0.701 5.701 9 C 0.171 3.829 10 C -0.114 4.114 11 C -0.096 4.096 12 C -0.117 4.117 13 C -0.086 4.086 14 C 0.184 3.816 15 N -0.739 5.739 16 C -0.251 4.251 17 H 0.078 0.922 18 C -0.073 4.073 19 N -0.969 5.969 20 Si 0.976 3.024 21 H -0.277 1.277 22 H -0.295 1.295 23 H -0.277 1.277 24 C -0.117 4.117 25 C -0.096 4.096 26 S 0.325 5.675 27 N -0.526 5.526 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.185 0.815 32 H 0.412 0.588 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.145 0.855 36 H 0.121 0.879 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.121 0.879 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.085 -24.180 0.010 32.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.088 3.912 4 C -0.166 4.166 5 C -0.322 4.322 6 C 0.382 3.618 7 O -0.426 6.426 8 N -0.353 5.353 9 C 0.049 3.951 10 C -0.114 4.114 11 C -0.114 4.114 12 C -0.135 4.135 13 C -0.086 4.086 14 C 0.059 3.941 15 N -0.381 5.381 16 C -0.382 4.382 17 H 0.096 0.904 18 C -0.265 4.265 19 N -0.619 5.619 20 Si 0.804 3.196 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.203 1.203 24 C -0.136 4.136 25 C -0.114 4.114 26 S 0.475 5.525 27 N -0.368 5.368 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.202 0.798 32 H 0.249 0.751 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.139 0.861 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.855 -23.226 0.009 32.586 hybrid contribution 1.192 -0.049 -0.001 1.193 sum -21.664 -23.276 0.009 31.797 Atomic orbital electron populations 1.23242 0.75028 1.05590 1.02539 1.86322 1.24651 1.22057 1.87933 1.19988 0.89937 0.85590 0.95704 1.20897 0.92480 0.98914 1.04334 1.25842 0.99096 0.98352 1.08886 1.16714 0.85449 0.82875 0.76721 1.90863 1.47706 1.53372 1.50702 1.45869 1.09884 1.05853 1.73667 1.20230 0.81332 0.89344 1.04212 1.19760 1.03844 0.94452 0.93392 1.21233 0.98368 0.93279 0.98528 1.21181 0.99968 0.94890 0.97510 1.20180 0.98700 0.95383 0.94350 1.19776 0.86283 0.89497 0.98587 1.42521 1.02061 1.04078 1.89490 1.19637 0.91951 0.84844 1.41798 0.90416 1.25592 0.95587 1.01939 1.03399 1.69825 0.98857 1.34045 1.59152 0.85185 0.76309 0.79819 0.78266 1.20272 1.22166 1.20287 1.21183 0.99964 0.94897 0.97507 1.21234 0.98371 0.93275 0.98530 1.84927 0.88593 1.10758 1.68216 1.76401 1.27541 1.01665 1.31228 0.92114 0.92107 0.85189 0.79814 0.75136 0.89527 0.89534 0.83747 0.86064 0.95197 0.95198 0.79477 0.93971 0.86062 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.43 113.37 1.18 1.46 16 2 O -0.30 -4.60 10.52 -93.19 -0.98 -5.58 16 3 C 0.30 5.03 7.36 84.75 0.62 5.65 16 4 C -0.13 -2.06 10.09 22.06 0.22 -1.84 16 5 C -0.19 -3.03 6.74 24.55 0.17 -2.86 16 6 C 0.60 11.09 7.80 86.57 0.68 11.77 16 7 O -0.55 -13.84 16.95 -4.12 -0.07 -13.91 16 8 N -0.70 -10.55 5.54 -470.41 -2.61 -13.15 16 9 C 0.17 2.85 5.80 85.64 0.50 3.35 16 10 C -0.11 -2.27 5.25 -19.87 -0.10 -2.37 16 11 C -0.10 -2.11 9.70 22.27 0.22 -1.89 16 12 C -0.12 -3.32 9.70 22.27 0.22 -3.10 16 13 C -0.09 -2.78 5.25 -19.87 -0.10 -2.89 16 14 C 0.18 7.35 6.38 85.63 0.55 7.89 16 15 N -0.74 -37.73 5.59 -347.20 -1.94 -39.67 16 16 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 19 N -0.97 -59.37 13.06 21.65 0.28 -59.08 16 20 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 C -0.12 -3.32 9.70 22.27 0.22 -3.10 16 25 C -0.10 -2.11 9.70 22.27 0.22 -1.89 16 26 S 0.33 4.45 23.27 -56.49 -1.31 3.13 16 27 N -0.53 -9.04 11.03 -175.21 -1.93 -10.97 16 28 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 29 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 30 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.41 4.84 7.82 -92.71 -0.73 4.11 16 33 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 34 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 38 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 39 H 0.37 20.56 7.66 -92.71 -0.71 19.85 16 40 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.12 3.44 8.06 -2.92 -0.02 3.42 16 42 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -70.55 384.88 -1.02 -71.57 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.36 Total: 26.54 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 5.88 Total: -6.68 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.20 Total: -122.87 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -1.05 Total: -19.49 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.31 Total: 3.13 kcal Total: -70.55 -1.02 -71.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753591451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.781 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds