Wall clock time and date at job start Wed Apr 1 2020 04:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76196 * 100.00122 * 2 1 4 4 N 1.32521 * 119.62368 * 0.02562 * 3 2 1 5 5 C 1.32104 * 121.86812 * 180.02562 * 4 3 2 6 6 O 1.35305 * 119.57447 * 180.02562 * 5 4 3 7 7 C 1.40659 * 120.85645 * 0.02562 * 5 4 3 8 8 C 1.47262 * 120.42576 * 179.97438 * 7 5 4 9 9 O 1.21624 * 119.99712 * 39.54200 * 8 7 5 10 10 N 1.34771 * 119.99814 * 219.54192 * 8 7 5 11 11 C 1.46929 * 120.63408 * 3.44305 * 10 8 7 12 12 C 1.53625 * 108.54300 * 126.36918 * 11 10 8 13 13 C 1.53035 * 109.24052 * 54.85621 * 12 11 10 14 14 C 1.53039 * 109.54334 * 298.51298 * 13 12 11 15 15 H 1.09006 * 109.49566 * 301.41558 * 14 13 12 16 16 C 1.50694 * 109.52652 * 181.33435 * 14 13 12 17 17 H 1.08001 * 120.00016 * 0.14352 * 16 14 13 18 18 C 1.37881 * 120.00040 * 180.14456 * 16 14 13 19 19 N 1.31515 * 119.99933 * 179.97438 * 18 16 14 20 20 Si 1.86793 * 120.00003 * 0.02562 * 18 16 14 21 21 H 1.48499 * 109.47302 * 89.99924 * 20 18 16 22 22 H 1.48505 * 109.47176 * 209.99924 * 20 18 16 23 23 H 1.48503 * 109.47364 * 329.99739 * 20 18 16 24 24 C 1.46929 * 120.62912 * 183.72639 * 10 8 7 25 25 C 1.39799 * 119.14749 * 359.71826 * 7 5 4 26 26 C 1.39569 * 118.30354 * 0.51900 * 25 7 5 27 27 C 1.43201 * 120.46267 * 179.78121 * 26 25 7 28 28 N 3.64675 * 171.15331 * 0.09095 * 2 1 3 29 29 H 1.09008 * 109.46771 * 300.00286 * 1 2 3 30 30 H 1.09000 * 109.46965 * 59.99965 * 1 2 3 31 31 H 1.09002 * 109.47356 * 180.02562 * 1 2 3 32 32 H 0.96699 * 114.00431 * 90.00318 * 6 5 4 33 33 H 1.08993 * 109.58698 * 246.20256 * 11 10 8 34 34 H 1.09001 * 109.58149 * 6.63039 * 11 10 8 35 35 H 1.09008 * 109.63206 * 294.86677 * 12 11 10 36 36 H 1.08998 * 109.42818 * 174.73138 * 12 11 10 37 37 H 1.09003 * 109.45773 * 178.49319 * 13 12 11 38 38 H 1.09001 * 109.46086 * 58.53672 * 13 12 11 39 39 H 0.96999 * 120.00299 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.58751 * 353.36946 * 24 10 8 41 41 H 1.09002 * 109.58836 * 113.79823 * 24 10 8 42 42 H 1.08000 * 120.84564 * 180.27389 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0953 2.5803 0.0005 5 6 1.2736 3.8893 0.0000 6 8 0.1977 4.7098 0.0011 7 6 2.5674 4.4411 -0.0016 8 6 2.7552 5.9017 -0.0027 9 8 2.0277 6.6088 0.6682 10 7 3.7331 6.4548 -0.7471 11 6 4.5712 5.6219 -1.6204 12 6 4.5272 6.2053 -3.0409 13 6 4.9389 7.6785 -2.9940 14 6 3.9517 8.4584 -2.1226 15 1 2.9460 8.3545 -2.5300 16 6 4.3386 9.9148 -2.1033 17 1 5.2011 10.2518 -2.6590 18 6 3.5914 10.8169 -1.3760 19 7 3.9293 12.0878 -1.3588 20 14 2.1000 10.2339 -0.4143 21 1 2.5155 9.8497 0.9586 22 1 1.0995 11.3289 -0.3404 23 1 1.4991 9.0596 -1.0964 24 6 3.9855 7.9014 -0.6960 25 6 3.6727 3.5852 0.0033 26 6 3.4436 2.2085 -0.0015 27 6 4.5421 1.2897 -0.0015 28 7 5.4134 0.5608 0.0009 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.1140 4.9486 0.8848 33 1 5.5973 5.6246 -1.2530 34 1 4.1871 4.6019 -1.6308 35 1 3.5160 6.1226 -3.4397 36 1 5.2171 5.6548 -3.6804 37 1 4.9348 8.0890 -4.0038 38 1 5.9405 7.7624 -2.5722 39 1 3.4039 12.7225 -0.8469 40 1 3.2149 8.3858 -0.0963 41 1 4.9649 8.0861 -0.2547 42 1 4.6783 3.9793 0.0066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771802490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:04 Heat of formation + Delta-G solvation = 6.299456 kcal Electronic energy + Delta-G solvation = -28295.978476 eV Core-core repulsion = 24368.491543 eV Total energy + Delta-G solvation = -3927.486933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37541 -39.48878 -37.96579 -36.97193 -36.62583 -34.16540 -32.98756 -32.03594 -31.35533 -30.47233 -29.38334 -26.17443 -25.46101 -24.48925 -24.28707 -22.14423 -21.03118 -19.66478 -19.45123 -18.48269 -18.16262 -17.11623 -16.91194 -16.73895 -15.94156 -15.59805 -15.15342 -14.70049 -14.49529 -14.38302 -14.14759 -13.97959 -13.94043 -13.80724 -13.49040 -13.24036 -13.11921 -13.01066 -12.87876 -12.80159 -12.54968 -12.26057 -12.17613 -11.49266 -11.25405 -11.15893 -10.78223 -10.59969 -10.46183 -10.33695 -10.16096 -9.92879 -9.84732 -9.69561 -9.28969 -9.15849 -8.66106 -8.28763 -8.15131 -6.14448 -4.16636 -0.19950 0.27756 0.79269 1.53266 2.17459 2.23085 2.80927 3.02215 3.07745 3.33722 3.37020 3.42121 3.45137 3.53977 4.00884 4.23456 4.36473 4.38439 4.68077 4.72951 4.78212 4.93592 5.08516 5.11444 5.17373 5.20654 5.36326 5.39111 5.51977 5.67310 5.89692 6.00794 6.06422 6.30788 6.41594 6.53806 6.64912 6.69990 6.85098 7.04253 7.07425 7.20469 7.36674 7.61558 7.66123 8.24642 8.44388 8.88618 9.46581 10.97407 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.003301 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.468439 B = 8479.749290 C = 9512.968662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.037 6.037 3 C 0.198 3.802 4 N -0.509 5.509 5 C 0.415 3.585 6 O -0.462 6.462 7 C -0.199 4.199 8 C 0.562 3.438 9 O -0.529 6.529 10 N -0.596 5.596 11 C 0.095 3.905 12 C -0.136 4.136 13 C -0.101 4.101 14 C 0.005 3.995 15 H 0.032 0.968 16 C -0.517 4.517 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.879 3.121 21 H -0.273 1.273 22 H -0.295 1.295 23 H -0.260 1.260 24 C 0.103 3.897 25 C 0.032 3.968 26 C -0.084 4.084 27 C 0.256 3.744 28 N -0.389 5.389 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.418 0.582 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.265 0.735 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 -23.856 3.137 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.205 5.795 3 C -0.055 4.055 4 N -0.232 5.232 5 C 0.231 3.769 6 O -0.271 6.271 7 C -0.209 4.209 8 C 0.348 3.652 9 O -0.407 6.407 10 N -0.328 5.328 11 C -0.028 4.028 12 C -0.174 4.174 13 C -0.139 4.139 14 C -0.015 4.015 15 H 0.050 0.950 16 C -0.555 4.555 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.708 3.292 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.185 1.185 24 C -0.017 4.017 25 C 0.003 3.997 26 C -0.098 4.098 27 C -0.060 4.060 28 N -0.064 5.064 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.280 0.720 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.802 -25.766 2.976 26.214 hybrid contribution -1.341 1.621 1.001 2.330 sum -5.143 -24.145 3.977 25.005 Atomic orbital electron populations 1.23575 0.92931 1.06596 1.07742 1.86138 1.08930 0.95501 1.88947 1.23188 0.89148 0.99271 0.93854 1.67653 1.32777 1.03604 1.19190 1.19160 0.85522 0.85309 0.86932 1.84613 1.44731 1.62973 1.34787 1.21074 0.93461 0.96066 1.10298 1.17604 0.81128 0.85740 0.80744 1.90800 1.44745 1.62158 1.42984 1.48368 1.32642 1.10191 1.41574 1.22223 0.94989 0.94041 0.91514 1.22066 1.02017 0.98542 0.94822 1.21451 0.99594 0.92028 1.00790 1.19490 0.96242 0.95752 0.89997 0.94986 1.20940 1.14394 0.89031 1.31163 0.90413 1.25059 0.97134 0.94803 0.96035 1.69888 1.39780 1.02170 1.41379 0.86994 0.83124 0.77968 0.81109 1.19974 1.22276 1.18515 1.22733 1.01469 0.75585 1.01936 1.21889 1.00108 0.89934 0.87755 1.16214 0.88289 0.91010 1.14242 1.24927 0.93032 0.93634 0.94412 1.81271 1.09156 1.07931 1.08085 0.88684 0.88587 0.87599 0.71980 0.90770 0.90471 0.91788 0.91397 0.92026 0.92376 0.92463 0.90053 0.91036 0.81818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.64 101.05 0.97 0.16 16 2 S -0.04 -0.30 21.68 -107.50 -2.33 -2.63 16 3 C 0.20 1.95 7.02 -16.23 -0.11 1.83 16 4 N -0.51 -5.47 9.11 -11.36 -0.10 -5.57 16 5 C 0.41 5.04 7.73 -16.52 -0.13 4.91 16 6 O -0.46 -5.77 12.29 -33.80 -0.42 -6.18 16 7 C -0.20 -2.50 5.21 -104.73 -0.55 -3.05 16 8 C 0.56 9.43 7.16 -12.60 -0.09 9.34 16 9 O -0.53 -10.69 15.53 -10.93 -0.17 -10.86 16 10 N -0.60 -10.06 2.97 -173.83 -0.52 -10.58 16 11 C 0.10 1.20 4.95 -3.48 -0.02 1.19 16 12 C -0.14 -1.88 6.10 -26.39 -0.16 -2.04 16 13 C -0.10 -1.79 5.11 -26.69 -0.14 -1.92 16 14 C 0.00 0.11 1.84 -91.66 -0.17 -0.06 16 15 H 0.03 0.77 7.21 -51.93 -0.37 0.39 16 16 C -0.52 -13.87 9.15 -34.44 -0.32 -14.18 16 17 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 19 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 20 Si 0.88 22.44 24.31 -169.99 -4.13 18.31 16 21 H -0.27 -6.96 6.92 56.52 0.39 -6.57 16 22 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 23 H -0.26 -6.66 6.53 56.52 0.37 -6.29 16 24 C 0.10 2.15 5.11 -3.71 -0.02 2.13 16 25 C 0.03 0.31 7.16 -38.50 -0.28 0.04 16 26 C -0.08 -0.82 5.77 -106.45 -0.61 -1.43 16 27 C 0.26 2.65 14.28 -22.47 -0.32 2.33 16 28 N -0.39 -4.65 18.54 41.84 0.78 -3.88 16 29 H 0.09 0.56 8.12 -51.91 -0.42 0.14 16 30 H 0.10 0.61 8.12 -51.92 -0.42 0.19 16 31 H 0.11 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.42 3.62 9.06 45.56 0.41 4.04 16 33 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.08 0.80 4.51 -51.93 -0.23 0.56 16 35 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 40 H 0.08 1.93 2.31 -51.93 -0.12 1.81 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.16 1.32 6.47 -52.49 -0.34 0.98 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -33.54 359.68 -6.78 -40.32 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.05 Total: 0.54 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.03 Total: 1.19 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.93 Total: -46.11 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.59 Total: -17.04 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.13 Total: 18.31 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -2.33 Total: -2.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.54 -6.78 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771802490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.616 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds