Wall clock time and date at job start Wed Apr 1 2020 04:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76196 * 100.00122 * 2 1 4 4 N 1.32521 * 119.62368 * 0.02562 * 3 2 1 5 5 C 1.32104 * 121.86812 * 180.02562 * 4 3 2 6 6 O 1.35305 * 119.57447 * 180.02562 * 5 4 3 7 7 C 1.40659 * 120.85645 * 0.02562 * 5 4 3 8 8 C 1.47262 * 120.42576 * 179.97438 * 7 5 4 9 9 O 1.21624 * 119.99712 * 39.54200 * 8 7 5 10 10 N 1.34771 * 119.99814 * 219.54192 * 8 7 5 11 11 C 1.46929 * 120.63408 * 3.44305 * 10 8 7 12 12 C 1.53625 * 108.54300 * 126.36918 * 11 10 8 13 13 C 1.53035 * 109.24052 * 54.85621 * 12 11 10 14 14 C 1.53039 * 109.54334 * 298.51298 * 13 12 11 15 15 H 1.09006 * 109.49566 * 301.41558 * 14 13 12 16 16 C 1.50694 * 109.52652 * 181.33435 * 14 13 12 17 17 H 1.08001 * 120.00016 * 0.14352 * 16 14 13 18 18 C 1.37881 * 120.00040 * 180.14456 * 16 14 13 19 19 N 1.31515 * 119.99933 * 179.97438 * 18 16 14 20 20 Si 1.86793 * 120.00003 * 0.02562 * 18 16 14 21 21 H 1.48499 * 109.47302 * 89.99924 * 20 18 16 22 22 H 1.48505 * 109.47176 * 209.99924 * 20 18 16 23 23 H 1.48503 * 109.47364 * 329.99739 * 20 18 16 24 24 C 1.46929 * 120.62912 * 183.72639 * 10 8 7 25 25 C 1.39799 * 119.14749 * 359.71826 * 7 5 4 26 26 C 1.39569 * 118.30354 * 0.51900 * 25 7 5 27 27 C 1.43201 * 120.46267 * 179.78121 * 26 25 7 28 28 N 3.64675 * 171.15331 * 0.09095 * 2 1 3 29 29 H 1.09008 * 109.46771 * 300.00286 * 1 2 3 30 30 H 1.09000 * 109.46965 * 59.99965 * 1 2 3 31 31 H 1.09002 * 109.47356 * 180.02562 * 1 2 3 32 32 H 0.96699 * 114.00431 * 90.00318 * 6 5 4 33 33 H 1.08993 * 109.58698 * 246.20256 * 11 10 8 34 34 H 1.09001 * 109.58149 * 6.63039 * 11 10 8 35 35 H 1.09008 * 109.63206 * 294.86677 * 12 11 10 36 36 H 1.08998 * 109.42818 * 174.73138 * 12 11 10 37 37 H 1.09003 * 109.45773 * 178.49319 * 13 12 11 38 38 H 1.09001 * 109.46086 * 58.53672 * 13 12 11 39 39 H 0.96999 * 120.00299 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.58751 * 353.36946 * 24 10 8 41 41 H 1.09002 * 109.58836 * 113.79823 * 24 10 8 42 42 H 1.08000 * 120.84564 * 180.27389 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0953 2.5803 0.0005 5 6 1.2736 3.8893 0.0000 6 8 0.1977 4.7098 0.0011 7 6 2.5674 4.4411 -0.0016 8 6 2.7552 5.9017 -0.0027 9 8 2.0277 6.6088 0.6682 10 7 3.7331 6.4548 -0.7471 11 6 4.5712 5.6219 -1.6204 12 6 4.5272 6.2053 -3.0409 13 6 4.9389 7.6785 -2.9940 14 6 3.9517 8.4584 -2.1226 15 1 2.9460 8.3545 -2.5300 16 6 4.3386 9.9148 -2.1033 17 1 5.2011 10.2518 -2.6590 18 6 3.5914 10.8169 -1.3760 19 7 3.9293 12.0878 -1.3588 20 14 2.1000 10.2339 -0.4143 21 1 2.5155 9.8497 0.9586 22 1 1.0995 11.3289 -0.3404 23 1 1.4991 9.0596 -1.0964 24 6 3.9855 7.9014 -0.6960 25 6 3.6727 3.5852 0.0033 26 6 3.4436 2.2085 -0.0015 27 6 4.5421 1.2897 -0.0015 28 7 5.4134 0.5608 0.0009 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.1140 4.9486 0.8848 33 1 5.5973 5.6246 -1.2530 34 1 4.1871 4.6019 -1.6308 35 1 3.5160 6.1226 -3.4397 36 1 5.2171 5.6548 -3.6804 37 1 4.9348 8.0890 -4.0038 38 1 5.9405 7.7624 -2.5722 39 1 3.4039 12.7225 -0.8469 40 1 3.2149 8.3858 -0.0963 41 1 4.9649 8.0861 -0.2547 42 1 4.6783 3.9793 0.0066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771802490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:03 Heat of formation + Delta-G solvation = -18.580129 kcal Electronic energy + Delta-G solvation = -28297.057335 eV Core-core repulsion = 24368.491543 eV Total energy + Delta-G solvation = -3928.565793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.33639 -40.69278 -38.91456 -38.29294 -37.49000 -35.58580 -34.41723 -33.45364 -32.41316 -31.91296 -29.87287 -27.36157 -27.07062 -25.52684 -25.34521 -23.57100 -22.25774 -20.84584 -20.52093 -19.55690 -19.01552 -18.88989 -18.10304 -17.96201 -16.98182 -16.71021 -16.39123 -15.94569 -15.74834 -15.43347 -15.20503 -15.13187 -15.00702 -14.83060 -14.55182 -14.46153 -14.34561 -14.09425 -13.84697 -13.82614 -13.68157 -13.40584 -13.14670 -13.05228 -12.89049 -12.31425 -12.14186 -11.93726 -11.86579 -11.59337 -11.55339 -11.33435 -11.14423 -11.02714 -10.78437 -10.75164 -10.66160 -9.65481 -8.88850 -8.36673 -6.39124 -1.03972 -0.53796 0.09662 0.95996 1.24830 1.27253 1.32945 1.43535 1.45133 1.69161 1.95652 2.22178 2.24146 2.45779 2.57300 3.00139 3.20107 3.29661 3.47662 3.84817 3.90632 4.09986 4.10360 4.25597 4.31610 4.33190 4.38591 4.42552 4.50131 4.59923 4.68423 4.72294 4.84899 4.97085 4.97250 5.09352 5.21990 5.35357 5.54128 5.63660 5.69632 6.02029 6.25621 6.27726 6.34903 6.43584 6.70184 6.99106 7.26804 8.79248 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.003301 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.468439 B = 8479.749290 C = 9512.968662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.032 6.032 3 C 0.200 3.800 4 N -0.510 5.510 5 C 0.416 3.584 6 O -0.479 6.479 7 C -0.213 4.213 8 C 0.560 3.440 9 O -0.572 6.572 10 N -0.600 5.600 11 C 0.089 3.911 12 C -0.129 4.129 13 C -0.098 4.098 14 C 0.004 3.996 15 H 0.012 0.988 16 C -0.511 4.511 17 H 0.050 0.950 18 C 0.026 3.974 19 N -0.939 5.939 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.298 1.298 23 H -0.266 1.266 24 C 0.110 3.890 25 C 0.052 3.948 26 C -0.081 4.081 27 C 0.277 3.723 28 N -0.415 5.415 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.430 0.570 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.267 0.733 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.357 -27.688 3.095 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.210 5.790 3 C -0.053 4.053 4 N -0.233 5.233 5 C 0.232 3.768 6 O -0.291 6.291 7 C -0.224 4.224 8 C 0.349 3.651 9 O -0.453 6.453 10 N -0.331 5.331 11 C -0.032 4.032 12 C -0.167 4.167 13 C -0.136 4.136 14 C -0.016 4.016 15 H 0.030 0.970 16 C -0.549 4.549 17 H 0.068 0.932 18 C -0.172 4.172 19 N -0.579 5.579 20 Si 0.768 3.232 21 H -0.201 1.201 22 H -0.225 1.225 23 H -0.191 1.191 24 C -0.011 4.011 25 C 0.024 3.976 26 C -0.094 4.094 27 C -0.039 4.039 28 N -0.091 5.091 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.148 0.852 32 H 0.295 0.705 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.594 -29.657 2.923 30.017 hybrid contribution -1.427 2.677 0.967 3.184 sum -5.021 -26.980 3.890 27.718 Atomic orbital electron populations 1.23683 0.90944 1.08196 1.07629 1.86232 1.11120 0.93754 1.87864 1.23554 0.89186 1.00162 0.92370 1.67739 1.32906 1.02911 1.19778 1.19216 0.85279 0.85744 0.86609 1.84564 1.45067 1.63326 1.36134 1.20622 0.94559 0.93586 1.13622 1.18113 0.80043 0.87304 0.79675 1.90769 1.46187 1.63676 1.44655 1.48328 1.33524 1.08759 1.42492 1.22606 0.96055 0.94530 0.89975 1.22028 1.02440 0.95819 0.96426 1.21383 0.98596 0.94387 0.99219 1.19420 0.96325 0.93744 0.92121 0.96996 1.21303 1.12696 0.91770 1.29165 0.93174 1.25664 0.99393 0.94865 0.97297 1.69993 1.41374 1.03277 1.43263 0.86050 0.80489 0.76858 0.79847 1.20136 1.22525 1.19063 1.22180 1.00609 0.78454 0.99907 1.21999 1.00251 0.89539 0.85847 1.16098 0.88016 0.90728 1.14574 1.24798 0.92513 0.93066 0.93566 1.81310 1.09983 1.08692 1.09074 0.88565 0.88872 0.85154 0.70534 0.87849 0.87520 0.92724 0.87380 0.92766 0.91658 0.92408 0.92991 0.90664 0.79556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.64 113.37 1.09 -0.08 16 2 S -0.03 -0.43 21.68 -56.49 -1.22 -1.65 16 3 C 0.20 3.34 7.02 85.25 0.60 3.94 16 4 N -0.51 -9.74 9.11 -302.99 -2.76 -12.49 16 5 C 0.42 9.35 7.73 85.24 0.66 10.01 16 6 O -0.48 -11.60 12.29 -70.43 -0.87 -12.47 16 7 C -0.21 -4.90 5.21 -19.94 -0.10 -5.00 16 8 C 0.56 18.10 7.16 86.62 0.62 18.72 16 9 O -0.57 -23.12 15.53 11.37 0.18 -22.94 16 10 N -0.60 -19.17 2.97 -822.12 -2.44 -21.61 16 11 C 0.09 1.91 4.95 86.51 0.43 2.34 16 12 C -0.13 -3.12 6.10 30.82 0.19 -2.93 16 13 C -0.10 -3.33 5.11 30.62 0.16 -3.17 16 14 C 0.00 0.16 1.84 -11.46 -0.02 0.14 16 15 H 0.01 0.58 7.21 -2.38 -0.02 0.56 16 16 C -0.51 -28.13 9.15 25.60 0.23 -27.90 16 17 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 18 C 0.03 1.53 5.45 84.66 0.46 2.00 16 19 N -0.94 -58.22 13.96 21.45 0.30 -57.92 16 20 Si 0.94 48.46 24.31 68.60 1.67 50.13 16 21 H -0.27 -14.10 6.92 99.48 0.69 -13.41 16 22 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 23 H -0.27 -13.74 6.53 99.48 0.65 -13.09 16 24 C 0.11 4.57 5.11 86.36 0.44 5.01 16 25 C 0.05 0.84 7.16 22.97 0.16 1.01 16 26 C -0.08 -1.29 5.77 -21.05 -0.12 -1.41 16 27 C 0.28 4.81 14.28 88.33 1.26 6.07 16 28 N -0.42 -8.76 18.54 19.00 0.35 -8.40 16 29 H 0.10 0.87 8.12 -2.39 -0.02 0.85 16 30 H 0.09 0.93 8.12 -2.40 -0.02 0.91 16 31 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.43 7.35 9.06 -74.06 -0.67 6.68 16 33 H 0.10 1.69 8.13 -2.39 -0.02 1.67 16 34 H 0.11 1.70 4.51 -2.39 -0.01 1.69 16 35 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.05 2.48 2.31 -2.39 -0.01 2.48 16 41 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.19 2.13 6.47 -2.91 -0.02 2.11 16 Total: -1.00 -75.83 359.68 1.62 -74.21 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 0.35 Total: 4.41 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.06 Total: 8.73 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -4.55 Total: -100.43 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.69 Total: -35.41 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.67 Total: 50.13 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -1.22 Total: -1.65 kcal Total: -75.83 1.62 -74.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771802490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.635 kcal (2) G-P(sol) polarization free energy of solvation -75.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds