Wall clock time and date at job start Wed Apr 1 2020 04:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30296 * 126.34368 * 2 1 4 4 N 1.28525 * 110.08252 * 179.97438 * 3 2 1 5 5 C 1.31288 * 109.85507 * 0.02562 * 4 3 2 6 6 S 1.76201 * 126.48588 * 180.02562 * 5 4 3 7 7 C 1.81004 * 99.99676 * 359.96860 * 6 5 4 8 8 C 1.50701 * 109.46706 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00330 * 4.03773 * 8 7 6 10 10 N 1.34786 * 119.99698 * 184.03954 * 8 7 6 11 11 C 1.46492 * 119.99587 * 185.20963 * 10 8 7 12 12 C 1.50695 * 109.47389 * 90.00317 * 11 10 8 13 13 H 1.08001 * 120.00082 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00184 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99849 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99777 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46727 * 90.00252 * 16 14 12 18 18 H 1.48501 * 109.47161 * 209.99871 * 16 14 12 19 19 H 1.48495 * 109.47482 * 330.00132 * 16 14 12 20 20 C 1.39927 * 119.99827 * 5.20725 * 10 8 7 21 21 C 1.38869 * 120.07268 * 292.26239 * 20 10 8 22 22 C 1.38107 * 119.92828 * 179.75105 * 21 20 10 23 23 C 1.38284 * 120.07157 * 0.52570 * 22 21 20 24 24 C 1.38284 * 120.13879 * 359.74547 * 23 22 21 25 25 C 1.38107 * 120.07364 * 359.97438 * 24 23 22 26 26 N 1.36544 * 107.03237 * 359.97438 * 5 4 3 27 27 N 1.36595 * 127.14465 * 180.02562 * 26 5 4 28 28 H 1.09008 * 109.46627 * 90.03078 * 1 2 3 29 29 H 1.08996 * 109.47432 * 210.02423 * 1 2 3 30 30 H 1.08996 * 109.47260 * 330.02915 * 1 2 3 31 31 H 1.09000 * 109.47323 * 300.00083 * 7 6 5 32 32 H 1.09005 * 109.47042 * 60.00435 * 7 6 5 33 33 H 1.09002 * 109.47007 * 209.99887 * 11 10 8 34 34 H 1.09004 * 109.47694 * 329.99738 * 11 10 8 35 35 H 0.97002 * 119.99756 * 179.97438 * 15 14 12 36 36 H 1.08006 * 120.03230 * 0.02699 * 21 20 10 37 37 H 1.08004 * 119.96492 * 180.27673 * 22 21 20 38 38 H 1.07993 * 119.93057 * 179.72546 * 23 22 21 39 39 H 1.07996 * 119.96182 * 179.97438 * 24 23 22 40 40 H 1.07991 * 120.03935 * 179.97438 * 25 24 23 41 41 H 1.00903 * 111.00142 * 89.97752 * 27 26 5 42 42 H 1.00908 * 111.00089 * 213.93350 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5953 -0.6207 0.0004 6 16 5.0748 -1.5776 0.0016 7 6 6.3067 -0.2514 0.0020 8 6 7.6895 -0.8504 0.0024 9 8 7.8296 -2.0528 -0.0716 10 7 8.7707 -0.0498 0.0850 11 6 10.1150 -0.6205 -0.0294 12 6 10.5392 -0.6212 -1.4754 13 1 9.8737 -0.2355 -2.2335 14 6 11.7769 -1.1142 -1.8306 15 7 12.5875 -1.5834 -0.9073 16 14 12.3023 -1.1156 -3.6232 17 1 12.9960 0.1595 -3.9366 18 1 13.2242 -2.2538 -3.8679 19 1 11.1045 -1.2536 -4.4900 20 6 8.6089 1.3264 0.2799 21 6 8.0476 2.1095 -0.7201 22 6 7.8846 3.4667 -0.5226 23 6 8.2896 4.0476 0.6652 24 6 8.8542 3.2714 1.6607 25 6 9.0146 1.9127 1.4716 26 7 2.3174 -1.1017 0.0002 27 7 1.9290 -2.4113 0.0005 28 1 -0.3633 -0.0006 -1.0278 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 6.1781 0.3643 -0.8882 32 1 6.1770 0.3647 0.8918 33 1 10.8147 -0.0220 0.5541 34 1 10.1091 -1.6431 0.3480 35 1 13.4581 -1.9305 -1.1573 36 1 7.7347 1.6570 -1.6495 37 1 7.4439 4.0756 -1.2981 38 1 8.1652 5.1097 0.8155 39 1 9.1699 3.7281 2.5870 40 1 9.4559 1.3071 2.2493 41 1 1.8263 -2.7578 0.9426 42 1 1.0769 -2.5359 -0.5255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005993228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:28 Heat of formation + Delta-G solvation = 105.552715 kcal Electronic energy + Delta-G solvation = -27336.931501 eV Core-core repulsion = 23446.041263 eV Total energy + Delta-G solvation = -3890.890238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.15344 -39.93973 -38.12810 -36.77965 -34.94542 -32.81455 -32.72474 -30.82090 -30.10096 -30.01347 -29.31368 -28.01032 -26.74655 -23.16754 -22.88981 -22.49145 -22.07636 -21.79222 -19.33374 -18.66585 -17.79659 -17.30398 -16.67981 -16.58013 -16.16503 -15.68361 -15.49934 -15.15812 -14.71981 -14.38911 -14.19722 -14.16179 -13.73411 -13.55046 -13.24915 -13.11689 -12.95202 -12.66739 -12.29731 -12.20523 -12.04816 -11.55085 -11.47942 -11.23197 -11.04186 -10.94726 -10.82994 -10.65302 -10.35870 -10.20235 -10.10977 -9.83027 -9.77452 -9.54550 -8.65101 -8.61027 -8.46094 -7.76377 -7.59147 -6.08571 -4.13391 0.94123 1.34179 1.58700 1.68686 1.94443 2.06165 2.53488 3.07090 3.30210 3.36329 3.40823 3.68802 3.70354 4.06291 4.14577 4.42420 4.67209 4.73950 4.89944 5.02782 5.14234 5.21960 5.25689 5.26865 5.27642 5.38607 5.38986 5.52402 5.66726 5.71668 5.85516 6.04304 6.05290 6.29442 6.62821 6.77302 6.80264 6.92404 7.07017 7.19870 7.29460 7.40089 7.86391 8.13944 8.18817 8.37591 8.67485 8.90736 9.51312 10.99847 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.003248 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.499985 B = 8618.708275 C =10074.755381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.139 3.861 3 N -0.270 5.270 4 N -0.291 5.291 5 C 0.175 3.825 6 S 0.106 5.894 7 C -0.150 4.150 8 C 0.534 3.466 9 O -0.515 6.515 10 N -0.551 5.551 11 C 0.248 3.752 12 C -0.529 4.529 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.156 3.844 21 C -0.121 4.121 22 C -0.106 4.106 23 C -0.131 4.131 24 C -0.110 4.110 25 C -0.123 4.123 26 N -0.311 5.311 27 N -0.583 5.583 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.366 0.634 42 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.475 4.792 5.078 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.132 4.132 3 N -0.111 5.111 4 N -0.136 5.136 5 C -0.199 4.199 6 S 0.333 5.667 7 C -0.302 4.302 8 C 0.320 3.680 9 O -0.391 6.391 10 N -0.279 5.279 11 C 0.130 3.870 12 C -0.568 4.568 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.064 3.936 21 C -0.141 4.141 22 C -0.125 4.125 23 C -0.149 4.149 24 C -0.128 4.128 25 C -0.142 4.142 26 N -0.095 5.095 27 N -0.215 5.215 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.185 0.815 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -20.912 4.120 4.702 21.827 hybrid contribution -1.079 0.303 -0.607 1.274 sum -21.991 4.423 4.095 22.802 Atomic orbital electron populations 1.20193 0.83457 1.04544 1.04211 1.25498 0.97092 0.83226 1.07380 1.73942 0.96636 1.23334 1.17173 1.74882 1.11522 1.05784 1.21424 1.27343 0.90963 0.95266 1.06322 1.86491 0.85836 1.02925 1.91415 1.23946 0.95392 1.01765 1.09141 1.19330 0.84378 0.86863 0.77466 1.90727 1.85736 1.13745 1.48936 1.45831 1.08728 1.04118 1.69194 1.19515 0.74263 0.95369 0.97813 1.21358 1.01210 1.41668 0.92515 0.92270 1.24902 0.96235 0.94855 0.97876 1.69925 1.09261 1.41092 1.32897 0.86473 0.78555 0.77628 0.84683 1.20563 1.21017 1.19772 1.17735 0.98440 0.84275 0.93168 1.21350 1.00758 0.93871 0.98091 1.20970 0.99726 0.94310 0.97471 1.21072 1.00102 0.99572 0.94160 1.20955 0.99442 0.93273 0.99167 1.21269 1.01019 0.95366 0.96568 1.44995 1.05227 1.02143 1.57112 1.59575 1.42784 0.97322 1.21795 0.89338 0.90981 0.88160 0.85879 0.86302 0.94365 0.93066 0.92599 0.85910 0.86042 0.86344 0.86063 0.85726 0.81540 0.80728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.18 36.00 0.37 0.03 16 2 C 0.14 1.50 8.13 -153.99 -1.25 0.25 16 3 N -0.27 -3.97 12.17 33.00 0.40 -3.57 16 4 N -0.29 -4.69 11.60 30.68 0.36 -4.33 16 5 C 0.17 2.55 8.20 -88.33 -0.72 1.83 16 6 S 0.11 1.64 21.41 -107.50 -2.30 -0.66 16 7 C -0.15 -2.51 4.25 36.01 0.15 -2.35 16 8 C 0.53 11.15 7.59 -10.98 -0.08 11.07 16 9 O -0.52 -12.47 15.42 5.56 0.09 -12.39 16 10 N -0.55 -11.86 2.51 -114.74 -0.29 -12.14 16 11 C 0.25 6.43 5.15 -5.20 -0.03 6.40 16 12 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 16 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.16 2.87 4.45 -83.69 -0.37 2.49 16 21 C -0.12 -2.02 8.44 -39.40 -0.33 -2.35 16 22 C -0.11 -1.49 10.04 -39.61 -0.40 -1.89 16 23 C -0.13 -1.70 10.04 -39.55 -0.40 -2.10 16 24 C -0.11 -1.50 10.04 -39.61 -0.40 -1.90 16 25 C -0.12 -2.00 9.67 -39.39 -0.38 -2.39 16 26 N -0.31 -3.46 3.81 -9.93 -0.04 -3.50 16 27 N -0.58 -4.18 10.41 60.35 0.63 -3.55 16 28 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.12 1.98 6.84 -51.92 -0.35 1.63 16 32 H 0.12 1.86 7.91 -51.91 -0.41 1.45 16 33 H 0.04 1.01 7.85 -51.93 -0.41 0.61 16 34 H 0.05 1.47 7.36 -51.93 -0.38 1.08 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 2.04 7.56 -52.48 -0.40 1.65 16 37 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 41 H 0.37 1.81 9.21 -181.36 -1.67 0.14 16 42 H 0.37 1.46 8.85 -181.36 -1.60 -0.15 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -36.08 380.83 -11.70 -47.78 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.73 Total: -0.24 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -4.26 Total: -4.42 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 1.80 Total: -52.69 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.30 Total: -0.66 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.08 -11.70 -47.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005993228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.330 kcal (2) G-P(sol) polarization free energy of solvation -36.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds