Wall clock time and date at job start Wed Apr 1 2020 04:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30296 * 126.34368 * 2 1 4 4 N 1.28525 * 110.08252 * 179.97438 * 3 2 1 5 5 C 1.31288 * 109.85507 * 0.02562 * 4 3 2 6 6 S 1.76201 * 126.48588 * 180.02562 * 5 4 3 7 7 C 1.81004 * 99.99676 * 359.96860 * 6 5 4 8 8 C 1.50701 * 109.46706 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00330 * 4.03773 * 8 7 6 10 10 N 1.34786 * 119.99698 * 184.03954 * 8 7 6 11 11 C 1.46492 * 119.99587 * 185.20963 * 10 8 7 12 12 C 1.50695 * 109.47389 * 90.00317 * 11 10 8 13 13 H 1.08001 * 120.00082 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00184 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99849 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99777 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46727 * 90.00252 * 16 14 12 18 18 H 1.48501 * 109.47161 * 209.99871 * 16 14 12 19 19 H 1.48495 * 109.47482 * 330.00132 * 16 14 12 20 20 C 1.39927 * 119.99827 * 5.20725 * 10 8 7 21 21 C 1.38869 * 120.07268 * 292.26239 * 20 10 8 22 22 C 1.38107 * 119.92828 * 179.75105 * 21 20 10 23 23 C 1.38284 * 120.07157 * 0.52570 * 22 21 20 24 24 C 1.38284 * 120.13879 * 359.74547 * 23 22 21 25 25 C 1.38107 * 120.07364 * 359.97438 * 24 23 22 26 26 N 1.36544 * 107.03237 * 359.97438 * 5 4 3 27 27 N 1.36595 * 127.14465 * 180.02562 * 26 5 4 28 28 H 1.09008 * 109.46627 * 90.03078 * 1 2 3 29 29 H 1.08996 * 109.47432 * 210.02423 * 1 2 3 30 30 H 1.08996 * 109.47260 * 330.02915 * 1 2 3 31 31 H 1.09000 * 109.47323 * 300.00083 * 7 6 5 32 32 H 1.09005 * 109.47042 * 60.00435 * 7 6 5 33 33 H 1.09002 * 109.47007 * 209.99887 * 11 10 8 34 34 H 1.09004 * 109.47694 * 329.99738 * 11 10 8 35 35 H 0.97002 * 119.99756 * 179.97438 * 15 14 12 36 36 H 1.08006 * 120.03230 * 0.02699 * 21 20 10 37 37 H 1.08004 * 119.96492 * 180.27673 * 22 21 20 38 38 H 1.07993 * 119.93057 * 179.72546 * 23 22 21 39 39 H 1.07996 * 119.96182 * 179.97438 * 24 23 22 40 40 H 1.07991 * 120.03935 * 179.97438 * 25 24 23 41 41 H 1.00903 * 111.00142 * 89.97752 * 27 26 5 42 42 H 1.00908 * 111.00089 * 213.93350 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5953 -0.6207 0.0004 6 16 5.0748 -1.5776 0.0016 7 6 6.3067 -0.2514 0.0020 8 6 7.6895 -0.8504 0.0024 9 8 7.8296 -2.0528 -0.0716 10 7 8.7707 -0.0498 0.0850 11 6 10.1150 -0.6205 -0.0294 12 6 10.5392 -0.6212 -1.4754 13 1 9.8737 -0.2355 -2.2335 14 6 11.7769 -1.1142 -1.8306 15 7 12.5875 -1.5834 -0.9073 16 14 12.3023 -1.1156 -3.6232 17 1 12.9960 0.1595 -3.9366 18 1 13.2242 -2.2538 -3.8679 19 1 11.1045 -1.2536 -4.4900 20 6 8.6089 1.3264 0.2799 21 6 8.0476 2.1095 -0.7201 22 6 7.8846 3.4667 -0.5226 23 6 8.2896 4.0476 0.6652 24 6 8.8542 3.2714 1.6607 25 6 9.0146 1.9127 1.4716 26 7 2.3174 -1.1017 0.0002 27 7 1.9290 -2.4113 0.0005 28 1 -0.3633 -0.0006 -1.0278 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 6.1781 0.3643 -0.8882 32 1 6.1770 0.3647 0.8918 33 1 10.8147 -0.0220 0.5541 34 1 10.1091 -1.6431 0.3480 35 1 13.4581 -1.9305 -1.1573 36 1 7.7347 1.6570 -1.6495 37 1 7.4439 4.0756 -1.2981 38 1 8.1652 5.1097 0.8155 39 1 9.1699 3.7281 2.5870 40 1 9.4559 1.3071 2.2493 41 1 1.8263 -2.7578 0.9426 42 1 1.0769 -2.5359 -0.5255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005993228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:27 Heat of formation + Delta-G solvation = 82.948384 kcal Electronic energy + Delta-G solvation = -27337.911698 eV Core-core repulsion = 23446.041263 eV Total energy + Delta-G solvation = -3891.870435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.10061 -41.48299 -39.54346 -37.59115 -36.62281 -34.84423 -33.53607 -32.15705 -31.50485 -30.87255 -30.68357 -28.95794 -28.48067 -25.03510 -24.01880 -23.80159 -23.35539 -22.64579 -20.74480 -19.69215 -18.75616 -18.55343 -18.47392 -18.03213 -17.56446 -17.13238 -16.81434 -16.30240 -16.21133 -15.66866 -15.50274 -15.47416 -14.87367 -14.57357 -14.45527 -14.30256 -14.04698 -13.74801 -13.62690 -13.60100 -13.39753 -13.18242 -13.03922 -12.66544 -12.47189 -12.42183 -12.18116 -12.14041 -11.99509 -11.74743 -11.46104 -11.23838 -11.08622 -10.67376 -10.57914 -10.17059 -9.82862 -9.29835 -8.78383 -8.26160 -6.40675 -0.21116 0.34354 0.42220 0.50222 0.81632 1.12656 1.34879 1.37955 1.42815 1.50014 1.54071 2.08314 2.37688 2.85982 3.04290 3.11430 3.29040 3.52733 3.82200 4.02401 4.05600 4.10924 4.19236 4.30290 4.31743 4.51409 4.57417 4.59035 4.64221 4.71164 4.79409 4.98369 5.03986 5.08799 5.14976 5.36544 5.52755 5.62417 5.64462 5.66713 5.71048 5.97798 6.04451 6.36258 6.50309 6.65847 7.04697 7.29900 7.38984 8.81537 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.003248 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.499985 B = 8618.708275 C =10074.755381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.161 3.839 3 N -0.315 5.315 4 N -0.317 5.317 5 C 0.158 3.842 6 S 0.096 5.904 7 C -0.129 4.129 8 C 0.529 3.471 9 O -0.559 6.559 10 N -0.552 5.552 11 C 0.266 3.734 12 C -0.545 4.545 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.271 1.271 20 C 0.119 3.881 21 C -0.134 4.134 22 C -0.104 4.104 23 C -0.118 4.118 24 C -0.104 4.104 25 C -0.138 4.138 26 N -0.307 5.307 27 N -0.585 5.585 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.269 0.731 36 H 0.114 0.886 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.118 0.882 41 H 0.381 0.619 42 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.882 6.753 4.526 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.111 4.111 3 N -0.156 5.156 4 N -0.162 5.162 5 C -0.218 4.218 6 S 0.323 5.677 7 C -0.281 4.281 8 C 0.316 3.684 9 O -0.439 6.439 10 N -0.279 5.279 11 C 0.146 3.854 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.196 1.196 20 C 0.029 3.971 21 C -0.153 4.153 22 C -0.122 4.122 23 C -0.136 4.136 24 C -0.122 4.122 25 C -0.157 4.157 26 N -0.088 5.088 27 N -0.222 5.222 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.168 0.832 38 H 0.176 0.824 39 H 0.172 0.828 40 H 0.136 0.864 41 H 0.201 0.799 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -23.367 6.118 4.164 24.511 hybrid contribution -0.483 -0.262 -0.366 0.660 sum -23.850 5.857 3.797 24.850 Atomic orbital electron populations 1.20539 0.79289 1.06557 1.06046 1.26527 0.98936 0.82124 1.03472 1.73871 0.96581 1.25234 1.19937 1.74769 1.12837 1.06662 1.21928 1.27007 0.91642 0.95102 1.08061 1.86413 0.86390 1.02638 1.92250 1.23633 0.92970 1.01831 1.09651 1.19977 0.85794 0.86356 0.76270 1.90687 1.86657 1.15593 1.50938 1.45632 1.07295 1.05896 1.69072 1.18937 0.76633 0.93258 0.96561 1.21600 1.01544 1.41909 0.93281 0.92871 1.25804 0.96183 0.94218 1.02490 1.70038 1.09700 1.41621 1.35066 0.85423 0.78163 0.78301 0.79023 1.19065 1.20255 1.19612 1.17988 1.01419 0.82699 0.94989 1.21381 1.01368 0.95159 0.97424 1.21329 0.98957 0.93154 0.98780 1.21559 0.97711 1.01408 0.92905 1.21339 0.98284 0.91878 1.00687 1.21385 1.01526 0.96908 0.95901 1.45009 1.04146 1.03720 1.55966 1.59614 1.44218 0.95036 1.23347 0.87379 0.87639 0.87463 0.85476 0.85428 0.95663 0.96939 0.92224 0.86838 0.83246 0.82358 0.82813 0.86431 0.79853 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.18 71.24 0.73 0.29 16 2 C 0.16 3.15 8.13 137.63 1.12 4.27 16 3 N -0.32 -9.04 12.17 -49.52 -0.60 -9.65 16 4 N -0.32 -10.21 11.60 -56.85 -0.66 -10.87 16 5 C 0.16 4.58 8.20 179.55 1.47 6.05 16 6 S 0.10 3.08 21.41 -56.49 -1.21 1.87 16 7 C -0.13 -4.52 4.25 71.24 0.30 -4.21 16 8 C 0.53 23.55 7.59 87.66 0.67 24.22 16 9 O -0.56 -29.03 15.42 -3.03 -0.05 -29.08 16 10 N -0.55 -25.34 2.51 -635.31 -1.59 -26.93 16 11 C 0.27 14.75 5.15 85.63 0.44 15.19 16 12 C -0.54 -32.06 9.39 25.60 0.24 -31.82 16 13 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 14 C 0.01 0.73 5.46 84.66 0.46 1.19 16 15 N -0.92 -56.23 13.29 21.45 0.28 -55.94 16 16 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 20 C 0.12 4.56 4.45 38.15 0.17 4.73 16 21 C -0.13 -4.49 8.44 22.39 0.19 -4.30 16 22 C -0.10 -2.70 10.04 22.25 0.22 -2.47 16 23 C -0.12 -2.67 10.04 22.29 0.22 -2.45 16 24 C -0.10 -2.60 10.04 22.25 0.22 -2.38 16 25 C -0.14 -4.56 9.67 22.39 0.22 -4.35 16 26 N -0.31 -6.37 3.81 -185.32 -0.71 -7.08 16 27 N -0.59 -7.14 10.41 37.02 0.39 -6.76 16 28 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.13 4.30 6.84 -2.40 -0.02 4.29 16 32 H 0.13 4.18 7.91 -2.39 -0.02 4.16 16 33 H 0.03 1.44 7.85 -2.39 -0.02 1.42 16 34 H 0.01 0.78 7.36 -2.38 -0.02 0.76 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.11 3.92 7.56 -2.91 -0.02 3.89 16 37 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 38 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 41 H 0.38 2.90 9.21 -210.55 -1.94 0.96 16 42 H 0.39 1.85 8.85 -210.55 -1.86 -0.01 16 Total: -1.00 -83.54 380.83 1.83 -81.70 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -2.72 Total: 11.18 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 6.67 Total: 3.96 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -2.89 Total: -117.23 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.05 Total: -29.08 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.21 Total: 1.87 kcal Total: -83.54 1.83 -81.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005993228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.653 kcal (2) G-P(sol) polarization free energy of solvation -83.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds