Wall clock time and date at job start Wed Apr 1 2020 04:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38120 * 120.03729 * 2 1 4 4 C 1.38281 * 120.06844 * 180.27276 * 3 2 1 5 5 C 1.38277 * 120.13188 * 359.70301 * 4 3 2 6 6 C 1.38121 * 120.06463 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.03272 * 180.02562 * 6 5 4 8 8 C 1.38829 * 120.03367 * 179.72254 * 2 1 3 9 9 N 1.40225 * 120.06652 * 0.02562 * 8 2 1 10 10 N 1.40603 * 127.44766 * 300.86755 * 9 8 2 11 11 N 1.28872 * 106.87694 * 179.97438 * 10 9 8 12 12 N 1.28399 * 110.53562 * 0.02562 * 11 10 9 13 13 C 1.31577 * 110.54403 * 359.74132 * 12 11 10 14 14 S 1.76199 * 126.53295 * 180.25739 * 13 12 11 15 15 C 1.81004 * 99.99965 * 0.17502 * 14 13 12 16 16 C 1.50695 * 109.46976 * 179.97438 * 15 14 13 17 17 O 1.21281 * 120.00325 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99798 * 179.97438 * 16 15 14 19 19 C 1.46495 * 120.00284 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47532 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99835 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00113 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99921 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99980 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47391 * 90.00031 * 24 22 20 26 26 H 1.48507 * 109.47148 * 209.99615 * 24 22 20 27 27 H 1.48501 * 109.47343 * 329.99376 * 24 22 20 28 28 H 1.09002 * 109.47654 * 265.05479 * 1 2 3 29 29 H 1.09005 * 109.47097 * 25.05539 * 1 2 3 30 30 H 1.09005 * 109.47458 * 145.05351 * 1 2 3 31 31 H 1.08003 * 119.96403 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.93442 * 179.72655 * 4 3 2 33 33 H 1.07996 * 119.96758 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47102 * 275.22228 * 7 6 5 35 35 H 1.08997 * 109.46976 * 35.22597 * 7 6 5 36 36 H 1.09009 * 109.47211 * 155.21870 * 7 6 5 37 37 H 1.09007 * 109.46735 * 299.99987 * 15 14 13 38 38 H 1.09001 * 109.47050 * 59.99682 * 15 14 13 39 39 H 0.97001 * 119.99989 * 0.02562 * 18 16 15 40 40 H 1.09002 * 109.47412 * 300.00939 * 19 18 16 41 41 H 1.09006 * 109.46909 * 59.99801 * 19 18 16 42 42 H 0.97005 * 120.00170 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 -0.0057 5 6 4.2759 0.0009 -0.0052 6 6 3.5901 -1.1980 0.0004 7 6 4.3480 -2.5005 0.0015 8 6 2.2018 -1.2019 0.0058 9 7 1.5028 -2.4175 0.0112 10 7 0.5798 -2.8687 0.9710 11 7 0.1795 -4.0320 0.5873 12 7 0.7515 -4.3649 -0.5130 13 6 1.5674 -3.4142 -0.9152 14 16 2.5576 -3.4290 -2.3726 15 6 2.0967 -5.0432 -3.0493 16 6 2.8430 -5.2796 -4.3370 17 8 3.6111 -4.4397 -4.7558 18 7 2.6575 -6.4249 -5.0229 19 6 3.3824 -6.6546 -6.2750 20 6 2.9998 -7.9991 -6.8378 21 1 2.2874 -8.6203 -6.3152 22 6 3.5583 -8.4358 -8.0203 23 7 3.2239 -9.6090 -8.5116 24 14 4.7898 -7.3610 -8.9245 25 1 6.1617 -7.6733 -8.4498 26 1 4.6990 -7.6239 -10.3833 27 1 4.4877 -5.9314 -8.6595 28 1 -0.3634 -0.0886 1.0238 29 1 -0.3633 0.9310 -0.4352 30 1 -0.3634 -0.8424 -0.5887 31 1 1.6583 2.1310 0.0004 32 1 4.1195 2.1327 -0.0102 33 1 5.3559 0.0046 -0.0092 34 1 4.6082 -2.7703 -1.0219 35 1 5.2583 -2.3906 0.5909 36 1 3.7257 -3.2826 0.4366 37 1 2.3518 -5.8239 -2.3326 38 1 1.0241 -5.0635 -3.2423 39 1 2.0434 -7.0969 -4.6878 40 1 3.1264 -5.8741 -6.9916 41 1 4.4552 -6.6335 -6.0828 42 1 3.6166 -9.9161 -9.3438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021542108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:01 Heat of formation + Delta-G solvation = 107.769390 kcal Electronic energy + Delta-G solvation = -26905.411155 eV Core-core repulsion = 23014.617040 eV Total energy + Delta-G solvation = -3890.794115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.23550 -40.22486 -39.17633 -35.40000 -34.54279 -34.26112 -32.61295 -32.43251 -31.38956 -30.42390 -28.18475 -27.53645 -27.21149 -24.96441 -23.45526 -22.48173 -22.05314 -21.35926 -20.27638 -18.99977 -17.82259 -17.28880 -17.20251 -16.15163 -15.93601 -15.77912 -15.68571 -15.45341 -14.79637 -14.64821 -14.38952 -14.15313 -13.71008 -13.57402 -13.47674 -13.34387 -13.25274 -13.02755 -12.82433 -12.48107 -12.41863 -12.22641 -12.09372 -12.00952 -11.88048 -11.45319 -11.23195 -11.12881 -10.97391 -10.87799 -10.84325 -10.05945 -9.69137 -9.56777 -9.27760 -9.16644 -8.87640 -8.41092 -8.15653 -6.28056 -4.31689 0.19871 0.41025 0.74298 0.84684 1.56475 1.76885 1.93837 2.84540 3.00722 3.21339 3.28473 3.35172 3.65346 4.08553 4.12823 4.26500 4.28297 4.38762 4.62563 4.71627 4.78616 4.87384 4.89577 4.98817 5.00897 5.06293 5.06960 5.16939 5.18376 5.24932 5.25653 5.29800 5.59055 5.72773 5.76825 5.82876 5.92370 5.96372 6.40774 6.63838 6.93342 6.96302 7.25111 7.92704 8.12281 8.33514 8.53236 8.72328 9.30347 10.83677 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.002398 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.769633 B =11675.486531 C =12581.337273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.119 4.119 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.051 4.051 7 C -0.133 4.133 8 C 0.106 3.894 9 N -0.315 5.315 10 N -0.075 5.075 11 N -0.031 5.031 12 N -0.332 5.332 13 C 0.206 3.794 14 S 0.131 5.869 15 C -0.160 4.160 16 C 0.520 3.480 17 O -0.546 6.546 18 N -0.691 5.691 19 C 0.221 3.779 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.889 5.889 24 Si 0.877 3.123 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.260 1.260 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.402 0.598 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 21.869 19.107 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.049 4.049 3 C -0.137 4.137 4 C -0.107 4.107 5 C -0.133 4.133 6 C -0.054 4.054 7 C -0.190 4.190 8 C 0.015 3.985 9 N -0.108 5.108 10 N -0.060 5.060 11 N -0.026 5.026 12 N -0.188 5.188 13 C -0.176 4.176 14 S 0.356 5.644 15 C -0.312 4.312 16 C 0.302 3.698 17 O -0.425 6.425 18 N -0.339 5.339 19 C 0.099 3.901 20 C -0.585 4.585 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.526 5.526 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.185 1.185 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.236 0.764 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.194 22.445 19.101 29.473 hybrid contribution -0.065 -0.440 -0.245 0.508 sum -0.260 22.005 18.856 28.980 Atomic orbital electron populations 1.20824 0.90033 1.03131 1.03372 1.19878 0.96846 0.91163 0.97060 1.20983 0.94302 0.96913 1.01508 1.21363 0.94162 0.98521 0.96613 1.20971 1.00560 0.90689 1.01073 1.19964 0.90877 0.97288 0.97273 1.21148 1.00268 0.93017 1.04551 1.17109 0.89714 0.81339 1.10347 1.48602 1.32061 1.14096 1.16057 1.82589 1.04925 1.07934 1.10594 1.77813 1.15200 1.04811 1.04771 1.75003 1.11514 1.23564 1.08727 1.28689 1.01153 0.88302 0.99460 1.86703 1.45677 1.22547 1.09468 1.24028 1.06931 0.99337 1.00921 1.19411 0.82784 0.83405 0.84206 1.90711 1.37891 1.44476 1.69457 1.46103 1.45046 1.17667 1.25115 1.19600 0.92153 0.97704 0.80664 1.21053 1.28176 1.00849 1.08455 0.90073 1.24789 0.96182 0.94926 0.96644 1.69875 1.43168 1.18747 1.20820 0.86825 0.81912 0.81749 0.79245 1.19777 1.20820 1.18480 0.89889 0.90487 0.91984 0.84602 0.84751 0.84358 0.88297 0.89959 0.92202 0.85250 0.85345 0.76382 0.95306 0.95748 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.24 36.00 0.33 -0.64 16 2 C -0.05 -0.43 5.89 -104.45 -0.62 -1.04 16 3 C -0.12 -0.79 9.68 -39.61 -0.38 -1.17 16 4 C -0.09 -0.52 10.04 -39.55 -0.40 -0.92 16 5 C -0.11 -0.79 9.72 -39.61 -0.38 -1.18 16 6 C -0.05 -0.47 5.70 -104.45 -0.60 -1.07 16 7 C -0.13 -1.18 8.36 36.00 0.30 -0.88 16 8 C 0.11 1.13 5.98 -83.58 -0.50 0.63 16 9 N -0.31 -3.92 2.28 -10.50 -0.02 -3.94 16 10 N -0.07 -1.04 13.28 60.35 0.80 -0.24 16 11 N -0.03 -0.46 13.36 60.35 0.81 0.35 16 12 N -0.33 -4.78 11.57 30.67 0.35 -4.42 16 13 C 0.21 2.68 6.77 -88.38 -0.60 2.08 16 14 S 0.13 1.62 18.36 -107.50 -1.97 -0.35 16 15 C -0.16 -2.02 5.72 36.00 0.21 -1.82 16 16 C 0.52 8.83 7.85 -10.99 -0.09 8.75 16 17 O -0.55 -11.03 15.86 5.56 0.09 -10.94 16 18 N -0.69 -12.80 5.55 -61.48 -0.34 -13.14 16 19 C 0.22 5.09 4.50 -5.20 -0.02 5.07 16 20 C -0.55 -14.40 9.83 -34.44 -0.34 -14.74 16 21 H 0.08 2.23 7.84 -52.49 -0.41 1.81 16 22 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 23 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 24 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.47 8.05 -51.93 -0.42 0.05 16 30 H 0.06 0.63 7.58 -51.93 -0.39 0.24 16 31 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 32 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.10 0.90 6.58 -51.93 -0.34 0.56 16 35 H 0.08 0.56 8.12 -51.93 -0.42 0.13 16 36 H 0.06 0.63 6.63 -51.92 -0.34 0.28 16 37 H 0.13 1.43 8.14 -51.91 -0.42 1.00 16 38 H 0.13 1.45 8.14 -51.92 -0.42 1.02 16 39 H 0.40 6.49 8.32 -40.82 -0.34 6.15 16 40 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 41 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -32.45 371.99 -6.90 -39.35 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.14 Total: 1.60 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.18 Total: -4.86 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 2.37 Total: -46.38 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.97 Total: -0.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.45 -6.90 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021542108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.123 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds