Wall clock time and date at job start Wed Apr 1 2020 04:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38120 * 120.03729 * 2 1 4 4 C 1.38281 * 120.06844 * 180.27276 * 3 2 1 5 5 C 1.38277 * 120.13188 * 359.70301 * 4 3 2 6 6 C 1.38121 * 120.06463 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.03272 * 180.02562 * 6 5 4 8 8 C 1.38829 * 120.03367 * 179.72254 * 2 1 3 9 9 N 1.40225 * 120.06652 * 0.02562 * 8 2 1 10 10 N 1.40603 * 127.44766 * 300.86755 * 9 8 2 11 11 N 1.28872 * 106.87694 * 179.97438 * 10 9 8 12 12 N 1.28399 * 110.53562 * 0.02562 * 11 10 9 13 13 C 1.31577 * 110.54403 * 359.74132 * 12 11 10 14 14 S 1.76199 * 126.53295 * 180.25739 * 13 12 11 15 15 C 1.81004 * 99.99965 * 0.17502 * 14 13 12 16 16 C 1.50695 * 109.46976 * 179.97438 * 15 14 13 17 17 O 1.21281 * 120.00325 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99798 * 179.97438 * 16 15 14 19 19 C 1.46495 * 120.00284 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47532 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99835 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00113 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99921 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99980 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47391 * 90.00031 * 24 22 20 26 26 H 1.48507 * 109.47148 * 209.99615 * 24 22 20 27 27 H 1.48501 * 109.47343 * 329.99376 * 24 22 20 28 28 H 1.09002 * 109.47654 * 265.05479 * 1 2 3 29 29 H 1.09005 * 109.47097 * 25.05539 * 1 2 3 30 30 H 1.09005 * 109.47458 * 145.05351 * 1 2 3 31 31 H 1.08003 * 119.96403 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.93442 * 179.72655 * 4 3 2 33 33 H 1.07996 * 119.96758 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47102 * 275.22228 * 7 6 5 35 35 H 1.08997 * 109.46976 * 35.22597 * 7 6 5 36 36 H 1.09009 * 109.47211 * 155.21870 * 7 6 5 37 37 H 1.09007 * 109.46735 * 299.99987 * 15 14 13 38 38 H 1.09001 * 109.47050 * 59.99682 * 15 14 13 39 39 H 0.97001 * 119.99989 * 0.02562 * 18 16 15 40 40 H 1.09002 * 109.47412 * 300.00939 * 19 18 16 41 41 H 1.09006 * 109.46909 * 59.99801 * 19 18 16 42 42 H 0.97005 * 120.00170 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 -0.0057 5 6 4.2759 0.0009 -0.0052 6 6 3.5901 -1.1980 0.0004 7 6 4.3480 -2.5005 0.0015 8 6 2.2018 -1.2019 0.0058 9 7 1.5028 -2.4175 0.0112 10 7 0.5798 -2.8687 0.9710 11 7 0.1795 -4.0320 0.5873 12 7 0.7515 -4.3649 -0.5130 13 6 1.5674 -3.4142 -0.9152 14 16 2.5576 -3.4290 -2.3726 15 6 2.0967 -5.0432 -3.0493 16 6 2.8430 -5.2796 -4.3370 17 8 3.6111 -4.4397 -4.7558 18 7 2.6575 -6.4249 -5.0229 19 6 3.3824 -6.6546 -6.2750 20 6 2.9998 -7.9991 -6.8378 21 1 2.2874 -8.6203 -6.3152 22 6 3.5583 -8.4358 -8.0203 23 7 3.2239 -9.6090 -8.5116 24 14 4.7898 -7.3610 -8.9245 25 1 6.1617 -7.6733 -8.4498 26 1 4.6990 -7.6239 -10.3833 27 1 4.4877 -5.9314 -8.6595 28 1 -0.3634 -0.0886 1.0238 29 1 -0.3633 0.9310 -0.4352 30 1 -0.3634 -0.8424 -0.5887 31 1 1.6583 2.1310 0.0004 32 1 4.1195 2.1327 -0.0102 33 1 5.3559 0.0046 -0.0092 34 1 4.6082 -2.7703 -1.0219 35 1 5.2583 -2.3906 0.5909 36 1 3.7257 -3.2826 0.4366 37 1 2.3518 -5.8239 -2.3326 38 1 1.0241 -5.0635 -3.2423 39 1 2.0434 -7.0969 -4.6878 40 1 3.1264 -5.8741 -6.9916 41 1 4.4552 -6.6335 -6.0828 42 1 3.6166 -9.9161 -9.3438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021542108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:00 Heat of formation + Delta-G solvation = 86.896099 kcal Electronic energy + Delta-G solvation = -26906.316289 eV Core-core repulsion = 23014.617040 eV Total energy + Delta-G solvation = -3891.699249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.23575 -40.85685 -40.64858 -36.27765 -36.19132 -34.88044 -34.47091 -33.55346 -32.07133 -31.78536 -29.29690 -28.89823 -27.78062 -25.86142 -24.45676 -24.19044 -22.97044 -21.97409 -21.75205 -19.92940 -19.14206 -18.57563 -18.17408 -17.71278 -17.28928 -16.84044 -16.45938 -16.43738 -16.02069 -15.69524 -15.37600 -15.18050 -14.83271 -14.80359 -14.50656 -14.36412 -14.18770 -14.08635 -13.93744 -13.79658 -13.63611 -13.10999 -13.05412 -12.95279 -12.68772 -12.65187 -12.57841 -12.35310 -12.11559 -11.93327 -11.89081 -11.80405 -11.65674 -11.16988 -10.91106 -10.05634 -9.92304 -9.74064 -9.15028 -8.38334 -6.46192 -0.64920 -0.60158 0.08483 0.18555 0.53963 0.86900 0.88706 1.35388 1.38191 1.46394 1.49959 2.26545 2.30394 2.44399 2.97277 3.22484 3.47413 3.58290 3.64658 3.79669 3.88863 3.89342 3.97159 4.17286 4.20474 4.23561 4.26418 4.35284 4.52284 4.59465 4.64660 4.76047 4.77775 4.91732 5.02900 5.08190 5.15352 5.24764 5.25767 5.37044 5.38835 5.39139 5.83912 6.04979 6.53586 6.67275 7.07826 7.08735 7.24962 8.76335 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.002398 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.769633 B =11675.486531 C =12581.337273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.115 4.115 4 C -0.078 4.078 5 C -0.115 4.115 6 C -0.065 4.065 7 C -0.131 4.131 8 C 0.068 3.932 9 N -0.302 5.302 10 N -0.084 5.084 11 N -0.051 5.051 12 N -0.346 5.346 13 C 0.204 3.796 14 S 0.144 5.856 15 C -0.155 4.155 16 C 0.526 3.474 17 O -0.575 6.575 18 N -0.693 5.693 19 C 0.232 3.768 20 C -0.548 4.548 21 H 0.059 0.941 22 C 0.025 3.975 23 N -0.932 5.932 24 Si 0.938 3.062 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.255 1.255 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.036 0.964 31 H 0.164 0.836 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.037 0.963 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.413 0.587 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 24.925 19.716 31.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.065 4.065 3 C -0.133 4.133 4 C -0.096 4.096 5 C -0.133 4.133 6 C -0.068 4.068 7 C -0.187 4.187 8 C -0.022 4.022 9 N -0.095 5.095 10 N -0.069 5.069 11 N -0.046 5.046 12 N -0.202 5.202 13 C -0.179 4.179 14 S 0.370 5.630 15 C -0.306 4.306 16 C 0.311 3.689 17 O -0.457 6.457 18 N -0.342 5.342 19 C 0.108 3.892 20 C -0.586 4.586 21 H 0.077 0.923 22 C -0.176 4.176 23 N -0.571 5.571 24 Si 0.762 3.238 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.179 1.179 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.182 0.818 32 H 0.187 0.813 33 H 0.181 0.819 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.249 0.751 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.096 25.511 19.746 32.279 hybrid contribution -0.458 -1.270 -0.350 1.395 sum 0.638 24.241 19.396 31.052 Atomic orbital electron populations 1.20803 0.90070 1.03254 1.02900 1.20105 0.97108 0.91545 0.97703 1.21365 0.94947 0.96964 1.00068 1.21815 0.93998 0.99541 0.94271 1.21341 1.01867 0.90139 0.99951 1.20140 0.90381 0.98248 0.98058 1.21119 1.00714 0.92521 1.04395 1.17567 0.90514 0.81021 1.13079 1.48660 1.31236 1.14484 1.15129 1.82508 1.05522 1.07714 1.11188 1.77785 1.16094 1.05425 1.05338 1.74913 1.12054 1.24364 1.08907 1.28681 1.01055 0.88470 0.99684 1.86704 1.45400 1.21907 1.09004 1.23916 1.07218 1.00552 0.98897 1.19871 0.82117 0.82078 0.84880 1.90697 1.39211 1.45261 1.70518 1.45903 1.45269 1.18885 1.24193 1.19203 0.92238 0.95461 0.82294 1.21289 1.27209 1.01866 1.08272 0.92278 1.25628 0.98131 0.96087 0.97708 1.69990 1.44878 1.20589 1.21648 0.85845 0.79733 0.80119 0.78145 1.18914 1.20219 1.17876 0.90217 0.88106 0.94519 0.81833 0.81293 0.81935 0.88756 0.87923 0.94387 0.83272 0.83583 0.75063 0.96195 0.96208 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.24 71.23 0.66 -1.14 16 2 C -0.06 -1.03 5.89 -19.75 -0.12 -1.15 16 3 C -0.12 -1.17 9.68 22.25 0.22 -0.95 16 4 C -0.08 -0.62 10.04 22.29 0.22 -0.39 16 5 C -0.11 -1.24 9.72 22.25 0.22 -1.02 16 6 C -0.07 -1.11 5.70 -19.75 -0.11 -1.22 16 7 C -0.13 -2.20 8.36 71.24 0.60 -1.60 16 8 C 0.07 1.41 5.98 38.08 0.23 1.64 16 9 N -0.30 -7.55 2.28 -187.13 -0.43 -7.97 16 10 N -0.08 -2.37 13.28 37.02 0.49 -1.87 16 11 N -0.05 -1.56 13.36 37.02 0.49 -1.06 16 12 N -0.35 -10.00 11.57 -56.89 -0.66 -10.65 16 13 C 0.20 5.26 6.77 179.57 1.22 6.48 16 14 S 0.14 3.47 18.36 -56.49 -1.04 2.43 16 15 C -0.15 -3.71 5.72 71.23 0.41 -3.31 16 16 C 0.53 17.33 7.85 87.65 0.69 18.02 16 17 O -0.58 -22.69 15.86 -3.03 -0.05 -22.73 16 18 N -0.69 -25.21 5.55 -466.79 -2.59 -27.80 16 19 C 0.23 10.59 4.50 85.63 0.38 10.97 16 20 C -0.55 -29.09 9.83 25.60 0.25 -28.84 16 21 H 0.06 3.32 7.84 -2.91 -0.02 3.29 16 22 C 0.02 1.36 5.47 84.65 0.46 1.82 16 23 N -0.93 -54.74 13.96 21.45 0.30 -54.44 16 24 Si 0.94 42.33 27.47 68.60 1.88 44.22 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 27 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.03 8.05 -2.38 -0.02 1.02 16 30 H 0.04 0.76 7.58 -2.38 -0.02 0.74 16 31 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16 33 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 34 H 0.09 1.64 6.58 -2.39 -0.02 1.62 16 35 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16 36 H 0.04 0.79 6.63 -2.38 -0.02 0.78 16 37 H 0.15 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.15 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.41 13.13 8.32 -92.71 -0.77 12.36 16 40 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 41 H 0.02 0.94 7.57 -2.38 -0.02 0.92 16 42 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -71.31 371.99 3.98 -67.33 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.25 Total: 13.27 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.32 Total: -0.70 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -2.39 Total: -103.81 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.22 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.04 Total: 2.43 kcal Total: -71.31 3.98 -67.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021542108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.226 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds