Wall clock time and date at job start Wed Apr 1 2020 04:20:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.38120 * 120.03729 * 2 1
4 4 C 1.38281 * 120.06844 * 180.27276 * 3 2 1
5 5 C 1.38277 * 120.13188 * 359.70301 * 4 3 2
6 6 C 1.38121 * 120.06463 * 0.02562 * 5 4 3
7 7 C 1.50698 * 120.03272 * 180.02562 * 6 5 4
8 8 C 1.38829 * 120.03367 * 179.72254 * 2 1 3
9 9 N 1.40225 * 120.06652 * 0.02562 * 8 2 1
10 10 N 1.40603 * 127.44766 * 300.86755 * 9 8 2
11 11 N 1.28872 * 106.87694 * 179.97438 * 10 9 8
12 12 N 1.28399 * 110.53562 * 0.02562 * 11 10 9
13 13 C 1.31577 * 110.54403 * 359.74132 * 12 11 10
14 14 S 1.76199 * 126.53295 * 180.25739 * 13 12 11
15 15 C 1.81004 * 99.99965 * 0.17502 * 14 13 12
16 16 C 1.50695 * 109.46976 * 179.97438 * 15 14 13
17 17 O 1.21281 * 120.00325 * 0.02562 * 16 15 14
18 18 N 1.34779 * 119.99798 * 179.97438 * 16 15 14
19 19 C 1.46495 * 120.00284 * 179.97438 * 18 16 15
20 20 C 1.50697 * 109.47532 * 179.97438 * 19 18 16
21 21 H 1.08002 * 119.99835 * 0.02562 * 20 19 18
22 22 C 1.37875 * 120.00113 * 179.97438 * 20 19 18
23 23 N 1.31513 * 119.99921 * 180.02562 * 22 20 19
24 24 Si 1.86799 * 119.99980 * 0.02562 * 22 20 19
25 25 H 1.48494 * 109.47391 * 90.00031 * 24 22 20
26 26 H 1.48507 * 109.47148 * 209.99615 * 24 22 20
27 27 H 1.48501 * 109.47343 * 329.99376 * 24 22 20
28 28 H 1.09002 * 109.47654 * 265.05479 * 1 2 3
29 29 H 1.09005 * 109.47097 * 25.05539 * 1 2 3
30 30 H 1.09005 * 109.47458 * 145.05351 * 1 2 3
31 31 H 1.08003 * 119.96403 * 0.02562 * 3 2 1
32 32 H 1.07999 * 119.93442 * 179.72655 * 4 3 2
33 33 H 1.07996 * 119.96758 * 180.02562 * 5 4 3
34 34 H 1.08992 * 109.47102 * 275.22228 * 7 6 5
35 35 H 1.08997 * 109.46976 * 35.22597 * 7 6 5
36 36 H 1.09009 * 109.47211 * 155.21870 * 7 6 5
37 37 H 1.09007 * 109.46735 * 299.99987 * 15 14 13
38 38 H 1.09001 * 109.47050 * 59.99682 * 15 14 13
39 39 H 0.97001 * 119.99989 * 0.02562 * 18 16 15
40 40 H 1.09002 * 109.47412 * 300.00939 * 19 18 16
41 41 H 1.09006 * 109.46909 * 59.99801 * 19 18 16
42 42 H 0.97005 * 120.00170 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1983 1.1957 0.0000
4 6 3.5811 1.1965 -0.0057
5 6 4.2759 0.0009 -0.0052
6 6 3.5901 -1.1980 0.0004
7 6 4.3480 -2.5005 0.0015
8 6 2.2018 -1.2019 0.0058
9 7 1.5028 -2.4175 0.0112
10 7 0.5798 -2.8687 0.9710
11 7 0.1795 -4.0320 0.5873
12 7 0.7515 -4.3649 -0.5130
13 6 1.5674 -3.4142 -0.9152
14 16 2.5576 -3.4290 -2.3726
15 6 2.0967 -5.0432 -3.0493
16 6 2.8430 -5.2796 -4.3370
17 8 3.6111 -4.4397 -4.7558
18 7 2.6575 -6.4249 -5.0229
19 6 3.3824 -6.6546 -6.2750
20 6 2.9998 -7.9991 -6.8378
21 1 2.2874 -8.6203 -6.3152
22 6 3.5583 -8.4358 -8.0203
23 7 3.2239 -9.6090 -8.5116
24 14 4.7898 -7.3610 -8.9245
25 1 6.1617 -7.6733 -8.4498
26 1 4.6990 -7.6239 -10.3833
27 1 4.4877 -5.9314 -8.6595
28 1 -0.3634 -0.0886 1.0238
29 1 -0.3633 0.9310 -0.4352
30 1 -0.3634 -0.8424 -0.5887
31 1 1.6583 2.1310 0.0004
32 1 4.1195 2.1327 -0.0102
33 1 5.3559 0.0046 -0.0092
34 1 4.6082 -2.7703 -1.0219
35 1 5.2583 -2.3906 0.5909
36 1 3.7257 -3.2826 0.4366
37 1 2.3518 -5.8239 -2.3326
38 1 1.0241 -5.0635 -3.2423
39 1 2.0434 -7.0969 -4.6878
40 1 3.1264 -5.8741 -6.9916
41 1 4.4552 -6.6335 -6.0828
42 1 3.6166 -9.9161 -9.3438
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000021542108.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:00
Heat of formation + Delta-G solvation = 86.896099 kcal
Electronic energy + Delta-G solvation = -26906.316289 eV
Core-core repulsion = 23014.617040 eV
Total energy + Delta-G solvation = -3891.699249 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.116 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-44.23575 -40.85685 -40.64858 -36.27765 -36.19132 -34.88044 -34.47091 -33.55346
-32.07133 -31.78536 -29.29690 -28.89823 -27.78062 -25.86142 -24.45676 -24.19044
-22.97044 -21.97409 -21.75205 -19.92940 -19.14206 -18.57563 -18.17408 -17.71278
-17.28928 -16.84044 -16.45938 -16.43738 -16.02069 -15.69524 -15.37600 -15.18050
-14.83271 -14.80359 -14.50656 -14.36412 -14.18770 -14.08635 -13.93744 -13.79658
-13.63611 -13.10999 -13.05412 -12.95279 -12.68772 -12.65187 -12.57841 -12.35310
-12.11559 -11.93327 -11.89081 -11.80405 -11.65674 -11.16988 -10.91106 -10.05634
-9.92304 -9.74064 -9.15028 -8.38334 -6.46192 -0.64920 -0.60158 0.08483
0.18555 0.53963 0.86900 0.88706 1.35388 1.38191 1.46394 1.49959
2.26545 2.30394 2.44399 2.97277 3.22484 3.47413 3.58290 3.64658
3.79669 3.88863 3.89342 3.97159 4.17286 4.20474 4.23561 4.26418
4.35284 4.52284 4.59465 4.64660 4.76047 4.77775 4.91732 5.02900
5.08190 5.15352 5.24764 5.25767 5.37044 5.38835 5.39139 5.83912
6.04979 6.53586 6.67275 7.07826 7.08735 7.24962 8.76335
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.017653 B = 0.002398 C = 0.002225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1585.769633 B =11675.486531 C =12581.337273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.062 4.062
3 C -0.115 4.115
4 C -0.078 4.078
5 C -0.115 4.115
6 C -0.065 4.065
7 C -0.131 4.131
8 C 0.068 3.932
9 N -0.302 5.302
10 N -0.084 5.084
11 N -0.051 5.051
12 N -0.346 5.346
13 C 0.204 3.796
14 S 0.144 5.856
15 C -0.155 4.155
16 C 0.526 3.474
17 O -0.575 6.575
18 N -0.693 5.693
19 C 0.232 3.768
20 C -0.548 4.548
21 H 0.059 0.941
22 C 0.025 3.975
23 N -0.932 5.932
24 Si 0.938 3.062
25 H -0.264 1.264
26 H -0.277 1.277
27 H -0.255 1.255
28 H 0.079 0.921
29 H 0.100 0.900
30 H 0.036 0.964
31 H 0.164 0.836
32 H 0.170 0.830
33 H 0.163 0.837
34 H 0.094 0.906
35 H 0.102 0.898
36 H 0.037 0.963
37 H 0.149 0.851
38 H 0.146 0.854
39 H 0.413 0.587
40 H 0.020 0.980
41 H 0.020 0.980
42 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.793 24.925 19.716 31.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.065 4.065
3 C -0.133 4.133
4 C -0.096 4.096
5 C -0.133 4.133
6 C -0.068 4.068
7 C -0.187 4.187
8 C -0.022 4.022
9 N -0.095 5.095
10 N -0.069 5.069
11 N -0.046 5.046
12 N -0.202 5.202
13 C -0.179 4.179
14 S 0.370 5.630
15 C -0.306 4.306
16 C 0.311 3.689
17 O -0.457 6.457
18 N -0.342 5.342
19 C 0.108 3.892
20 C -0.586 4.586
21 H 0.077 0.923
22 C -0.176 4.176
23 N -0.571 5.571
24 Si 0.762 3.238
25 H -0.189 1.189
26 H -0.202 1.202
27 H -0.179 1.179
28 H 0.098 0.902
29 H 0.119 0.881
30 H 0.055 0.945
31 H 0.182 0.818
32 H 0.187 0.813
33 H 0.181 0.819
34 H 0.112 0.888
35 H 0.121 0.879
36 H 0.056 0.944
37 H 0.167 0.833
38 H 0.164 0.836
39 H 0.249 0.751
40 H 0.038 0.962
41 H 0.038 0.962
42 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 1.096 25.511 19.746 32.279
hybrid contribution -0.458 -1.270 -0.350 1.395
sum 0.638 24.241 19.396 31.052
Atomic orbital electron populations
1.20803 0.90070 1.03254 1.02900 1.20105 0.97108 0.91545 0.97703
1.21365 0.94947 0.96964 1.00068 1.21815 0.93998 0.99541 0.94271
1.21341 1.01867 0.90139 0.99951 1.20140 0.90381 0.98248 0.98058
1.21119 1.00714 0.92521 1.04395 1.17567 0.90514 0.81021 1.13079
1.48660 1.31236 1.14484 1.15129 1.82508 1.05522 1.07714 1.11188
1.77785 1.16094 1.05425 1.05338 1.74913 1.12054 1.24364 1.08907
1.28681 1.01055 0.88470 0.99684 1.86704 1.45400 1.21907 1.09004
1.23916 1.07218 1.00552 0.98897 1.19871 0.82117 0.82078 0.84880
1.90697 1.39211 1.45261 1.70518 1.45903 1.45269 1.18885 1.24193
1.19203 0.92238 0.95461 0.82294 1.21289 1.27209 1.01866 1.08272
0.92278 1.25628 0.98131 0.96087 0.97708 1.69990 1.44878 1.20589
1.21648 0.85845 0.79733 0.80119 0.78145 1.18914 1.20219 1.17876
0.90217 0.88106 0.94519 0.81833 0.81293 0.81935 0.88756 0.87923
0.94387 0.83272 0.83583 0.75063 0.96195 0.96208 0.91886
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.80 9.24 71.23 0.66 -1.14 16
2 C -0.06 -1.03 5.89 -19.75 -0.12 -1.15 16
3 C -0.12 -1.17 9.68 22.25 0.22 -0.95 16
4 C -0.08 -0.62 10.04 22.29 0.22 -0.39 16
5 C -0.11 -1.24 9.72 22.25 0.22 -1.02 16
6 C -0.07 -1.11 5.70 -19.75 -0.11 -1.22 16
7 C -0.13 -2.20 8.36 71.24 0.60 -1.60 16
8 C 0.07 1.41 5.98 38.08 0.23 1.64 16
9 N -0.30 -7.55 2.28 -187.13 -0.43 -7.97 16
10 N -0.08 -2.37 13.28 37.02 0.49 -1.87 16
11 N -0.05 -1.56 13.36 37.02 0.49 -1.06 16
12 N -0.35 -10.00 11.57 -56.89 -0.66 -10.65 16
13 C 0.20 5.26 6.77 179.57 1.22 6.48 16
14 S 0.14 3.47 18.36 -56.49 -1.04 2.43 16
15 C -0.15 -3.71 5.72 71.23 0.41 -3.31 16
16 C 0.53 17.33 7.85 87.65 0.69 18.02 16
17 O -0.58 -22.69 15.86 -3.03 -0.05 -22.73 16
18 N -0.69 -25.21 5.55 -466.79 -2.59 -27.80 16
19 C 0.23 10.59 4.50 85.63 0.38 10.97 16
20 C -0.55 -29.09 9.83 25.60 0.25 -28.84 16
21 H 0.06 3.32 7.84 -2.91 -0.02 3.29 16
22 C 0.02 1.36 5.47 84.65 0.46 1.82 16
23 N -0.93 -54.74 13.96 21.45 0.30 -54.44 16
24 Si 0.94 42.33 27.47 68.60 1.88 44.22 16
25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16
26 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16
27 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16
28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
29 H 0.10 1.03 8.05 -2.38 -0.02 1.02 16
30 H 0.04 0.76 7.58 -2.38 -0.02 0.74 16
31 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16
32 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16
33 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16
34 H 0.09 1.64 6.58 -2.39 -0.02 1.62 16
35 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16
36 H 0.04 0.79 6.63 -2.38 -0.02 0.78 16
37 H 0.15 3.06 8.14 -2.39 -0.02 3.04 16
38 H 0.15 3.07 8.14 -2.39 -0.02 3.05 16
39 H 0.41 13.13 8.32 -92.71 -0.77 12.36 16
40 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16
41 H 0.02 0.94 7.57 -2.38 -0.02 0.92 16
42 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16
Total: -1.00 -71.31 371.99 3.98 -67.33
By element:
Atomic # 1 Polarization: 13.03 SS G_CDS: 0.25 Total: 13.27 kcal
Atomic # 6 Polarization: -6.02 SS G_CDS: 5.32 Total: -0.70 kcal
Atomic # 7 Polarization: -101.42 SS G_CDS: -2.39 Total: -103.81 kcal
Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.73 kcal
Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.22 kcal
Atomic # 16 Polarization: 3.47 SS G_CDS: -1.04 Total: 2.43 kcal
Total: -71.31 3.98 -67.33 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000021542108.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 154.226 kcal
(2) G-P(sol) polarization free energy of solvation -71.306 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.920 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.330 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.896 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds