Wall clock time and date at job start Wed Apr 1 2020 04:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46995 * 2 1 4 4 C 1.50701 * 109.47257 * 180.02562 * 3 2 1 5 5 N 1.31066 * 126.65975 * 269.69066 * 4 3 2 6 6 N 1.28844 * 107.99473 * 179.89320 * 5 4 3 7 7 N 1.28740 * 109.39230 * 0.37553 * 6 5 4 8 8 N 1.29020 * 108.80893 * 359.76618 * 7 6 5 9 9 C 1.46499 * 126.43950 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47053 * 270.02406 * 9 8 7 11 11 O 1.21301 * 119.99687 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00222 * 179.97438 * 10 9 8 13 13 C 1.39935 * 119.99906 * 175.96325 * 12 10 9 14 14 C 1.38677 * 120.11693 * 34.42092 * 13 12 10 15 15 C 1.38216 * 120.02103 * 179.97438 * 14 13 12 16 16 C 1.38402 * 120.25137 * 0.02562 * 15 14 13 17 17 C 1.38088 * 120.22298 * 0.02562 * 16 15 14 18 18 C 1.38996 * 119.98032 * 359.70008 * 17 16 15 19 19 S 1.76194 * 120.12554 * 180.27738 * 18 17 16 20 20 C 1.76201 * 99.99982 * 6.87136 * 19 18 17 21 21 H 1.08004 * 120.00176 * 354.89703 * 20 19 18 22 22 C 1.38692 * 120.00054 * 174.90187 * 20 19 18 23 23 N 1.31654 * 119.99935 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99990 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47328 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47351 * 119.99919 * 24 22 20 27 27 H 1.48506 * 109.47013 * 239.99918 * 24 22 20 28 28 H 1.08997 * 109.47121 * 300.00094 * 1 2 3 29 29 H 1.09008 * 109.46715 * 60.00238 * 1 2 3 30 30 H 1.08999 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46998 * 120.00263 * 2 1 3 32 32 H 1.09000 * 109.46886 * 240.00358 * 2 1 3 33 33 H 1.08999 * 109.47462 * 299.99979 * 3 2 1 34 34 H 1.08997 * 109.47263 * 59.99993 * 3 2 1 35 35 H 1.09001 * 109.47141 * 30.01785 * 9 8 7 36 36 H 1.08991 * 109.47830 * 150.02488 * 9 8 7 37 37 H 0.96999 * 119.99782 * 355.95539 * 12 10 9 38 38 H 1.08001 * 119.99034 * 359.96395 * 14 13 12 39 39 H 1.07995 * 119.87834 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.89096 * 179.97438 * 16 15 14 41 41 H 1.08005 * 120.00866 * 179.97438 * 17 16 15 42 42 H 0.96995 * 119.99697 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3300 1.4481 1.0504 6 7 5.5505 1.4437 0.6376 7 7 5.5663 1.4435 -0.6497 8 7 4.3502 1.4427 -1.0807 9 6 3.9237 1.4428 -2.4822 10 6 3.7770 2.8636 -2.9626 11 8 4.0058 3.7856 -2.2082 12 7 3.3917 3.1100 -4.2304 13 6 3.1737 4.4264 -4.6522 14 6 3.9528 5.4567 -4.1476 15 6 3.7361 6.7561 -4.5659 16 6 2.7426 7.0352 -5.4881 17 6 1.9601 6.0173 -5.9964 18 6 2.1736 4.7064 -5.5866 19 16 1.1823 3.4036 -6.2382 20 6 0.2779 4.2906 -7.4630 21 1 0.3895 5.3616 -7.5467 22 6 -0.5773 3.6135 -8.3195 23 7 -0.7131 2.3079 -8.2177 24 14 -1.5356 4.5537 -9.6183 25 1 -1.2077 5.9991 -9.5259 26 1 -1.1701 4.0480 -10.9658 27 1 -2.9912 4.3615 -9.3955 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 4.6695 0.9293 -3.0890 36 1 2.9667 0.9287 -2.5708 37 1 3.2655 2.3748 -4.8505 38 1 4.7289 5.2438 -3.4273 39 1 4.3439 7.5568 -4.1712 40 1 2.5781 8.0527 -5.8106 41 1 1.1855 6.2391 -6.7156 42 1 -1.3109 1.8343 -8.8169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068068838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:41 Heat of formation + Delta-G solvation = 102.633930 kcal Electronic energy + Delta-G solvation = -27286.552975 eV Core-core repulsion = 23395.536169 eV Total energy + Delta-G solvation = -3891.016806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.28964 -40.46263 -38.10199 -36.12539 -35.38589 -34.73435 -32.89421 -32.29268 -30.53994 -30.36860 -28.49868 -27.54605 -26.02373 -23.90149 -23.25837 -22.56707 -22.17144 -21.45110 -20.50122 -18.73232 -17.97314 -17.76278 -16.74149 -16.44935 -16.21641 -15.83687 -15.63012 -15.34783 -15.19716 -14.46389 -14.32047 -14.00208 -13.71948 -13.57327 -13.24832 -13.06914 -12.89255 -12.69623 -12.45460 -12.14953 -11.98231 -11.85685 -11.70823 -11.63629 -11.34838 -11.33484 -11.21881 -11.16860 -11.07761 -10.54887 -10.33471 -10.16169 -10.00825 -9.75462 -9.66866 -8.94712 -8.83165 -7.95052 -6.71772 -6.66991 -4.39466 1.04833 1.57868 1.65529 1.90687 2.16903 2.38365 2.83285 2.99752 3.01248 3.09247 3.21291 3.71832 3.84731 3.93603 4.19398 4.31139 4.35623 4.46143 4.58393 4.76805 4.77214 4.91140 4.92246 5.23825 5.32525 5.34647 5.45713 5.46065 5.51591 5.58326 5.68155 5.70275 5.78772 5.91336 5.96673 5.97440 6.03857 6.35996 6.63432 6.67543 6.90613 7.05421 7.29205 7.37434 7.48179 7.92417 7.99990 8.52008 8.82622 10.40183 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.003079 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.114459 B = 9091.718265 C =10718.040348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.044 4.044 4 C 0.204 3.796 5 N -0.305 5.305 6 N -0.075 5.075 7 N -0.086 5.086 8 N -0.293 5.293 9 C 0.093 3.907 10 C 0.498 3.502 11 O -0.509 6.509 12 N -0.644 5.644 13 C 0.113 3.887 14 C -0.097 4.097 15 C -0.149 4.149 16 C -0.108 4.108 17 C -0.130 4.130 18 C -0.098 4.098 19 S 0.037 5.963 20 C -0.547 4.547 21 H 0.096 0.904 22 C 0.079 3.921 23 N -0.865 5.865 24 Si 0.925 3.075 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.414 0.586 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.141 0.859 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -3.942 8.472 9.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.074 4.074 5 N -0.154 5.154 6 N -0.068 5.068 7 N -0.071 5.071 8 N -0.094 5.094 9 C -0.033 4.033 10 C 0.282 3.718 11 O -0.384 6.384 12 N -0.290 5.290 13 C 0.011 3.989 14 C -0.119 4.119 15 C -0.173 4.173 16 C -0.129 4.129 17 C -0.156 4.156 18 C -0.215 4.215 19 S 0.291 5.709 20 C -0.694 4.694 21 H 0.114 0.886 22 C -0.132 4.132 23 N -0.498 5.498 24 Si 0.750 3.250 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.252 0.748 38 H 0.147 0.853 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.158 0.842 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.251 -4.867 9.787 11.728 hybrid contribution -1.322 1.555 -2.182 2.987 sum 2.930 -3.312 7.605 8.797 Atomic orbital electron populations 1.21770 0.94133 1.02474 1.02716 1.21534 0.97081 0.94168 1.03008 1.20375 0.82204 0.99772 1.06134 1.26068 0.98459 1.00504 0.82350 1.74997 0.96809 1.19428 1.24145 1.78583 1.12935 1.14819 1.00490 1.78877 1.01998 1.17923 1.08309 1.47811 1.04741 1.48016 1.08796 1.21991 1.05916 0.97769 0.77631 1.20280 0.78590 0.90375 0.82585 1.90806 1.48027 1.44866 1.54709 1.43111 1.66244 1.08478 1.11165 1.17035 0.97699 0.83125 1.01007 1.20952 0.98767 0.92094 1.00054 1.20773 1.00338 0.95853 1.00301 1.21029 0.96040 0.98558 0.97233 1.21326 1.01296 0.91122 1.01871 1.22524 0.98036 1.00553 1.00379 1.83017 1.39358 1.09303 1.39181 1.23312 1.29831 0.96953 1.19318 0.88636 1.25086 0.95848 0.95169 0.97054 1.69984 1.35502 1.07002 1.37310 0.85991 0.79175 0.79872 0.79938 1.19104 1.20187 1.20202 0.92141 0.91891 0.92027 0.90836 0.91731 0.88821 0.87241 0.83640 0.83739 0.74801 0.85332 0.86831 0.86865 0.84213 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 3 C -0.04 -0.39 5.36 -27.88 -0.15 -0.54 16 4 C 0.20 2.51 7.39 -155.44 -1.15 1.36 16 5 N -0.31 -4.59 12.36 32.70 0.40 -4.18 16 6 N -0.07 -1.21 13.43 60.35 0.81 -0.40 16 7 N -0.09 -1.28 13.29 60.35 0.80 -0.47 16 8 N -0.29 -3.58 2.83 -59.44 -0.17 -3.75 16 9 C 0.09 0.82 6.54 -5.19 -0.03 0.79 16 10 C 0.50 6.51 7.74 -10.98 -0.09 6.42 16 11 O -0.51 -8.69 13.85 5.54 0.08 -8.61 16 12 N -0.64 -8.95 5.03 -9.70 -0.05 -9.00 16 13 C 0.11 1.98 6.32 -83.45 -0.53 1.45 16 14 C -0.10 -1.68 8.69 -39.43 -0.34 -2.02 16 15 C -0.15 -2.41 10.04 -39.53 -0.40 -2.81 16 16 C -0.11 -1.79 10.03 -39.58 -0.40 -2.19 16 17 C -0.13 -2.51 9.26 -39.36 -0.36 -2.87 16 18 C -0.10 -1.92 6.12 -38.75 -0.24 -2.16 16 19 S 0.04 0.80 20.53 -107.50 -2.21 -1.40 16 20 C -0.55 -13.43 9.07 30.90 0.28 -13.15 16 21 H 0.10 2.27 4.83 -52.48 -0.25 2.02 16 22 C 0.08 1.94 5.49 -17.46 -0.10 1.85 16 23 N -0.86 -22.18 13.22 55.49 0.73 -21.45 16 24 Si 0.92 19.04 29.55 -169.99 -5.02 14.02 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.78 7.81 -51.93 -0.41 0.38 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.15 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.14 0.77 7.74 -51.93 -0.40 0.37 16 37 H 0.41 4.93 7.96 -40.82 -0.32 4.61 16 38 H 0.13 2.24 6.19 -52.49 -0.32 1.91 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.14 2.80 4.95 -52.48 -0.26 2.54 16 42 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -32.14 374.18 -7.18 -39.32 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.91 Total: 5.77 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.29 Total: -15.48 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 2.53 Total: -39.26 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.21 Total: -1.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.14 -7.18 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068068838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.955 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds