Wall clock time and date at job start Wed Apr 1 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 120.00394 * 2 1 4 4 H 1.48506 * 109.46995 * 269.99737 * 3 2 1 5 5 H 1.48499 * 109.46893 * 29.99632 * 3 2 1 6 6 H 1.48500 * 109.46998 * 149.99886 * 3 2 1 7 7 C 1.38954 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00243 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99468 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00233 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99410 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46882 * 179.97438 * 12 10 9 14 14 C 1.46963 * 110.99595 * 66.17766 * 13 12 10 15 15 C 1.53056 * 109.35944 * 183.16796 * 14 13 12 16 16 N 1.46956 * 109.38342 * 301.62902 * 15 14 13 17 17 C 1.38326 * 111.00090 * 183.17636 * 16 15 14 18 18 N 1.32474 * 120.53050 * 359.72856 * 17 16 15 19 19 C 1.32074 * 121.18857 * 179.71927 * 18 17 16 20 20 N 1.31289 * 122.18424 * 0.58829 * 19 18 17 21 21 C 1.33899 * 121.03753 * 359.69976 * 20 19 18 22 22 S 1.75747 * 131.28280 * 180.02562 * 21 20 19 23 23 C 1.75364 * 92.18603 * 179.97438 * 22 21 20 24 24 C 1.31882 * 111.38788 * 359.97438 * 23 22 21 25 25 C 1.39759 * 119.10250 * 359.97438 * 21 20 19 26 26 C 1.46962 * 110.87987 * 59.31148 * 16 15 14 27 27 C 1.46956 * 111.00102 * 189.99751 * 13 12 10 28 28 H 0.97003 * 119.98921 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00030 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47655 * 60.00069 * 12 10 9 31 31 H 1.08997 * 109.47272 * 299.99759 * 12 10 9 32 32 H 1.08992 * 109.47287 * 63.21185 * 14 13 12 33 33 H 1.08994 * 109.50466 * 303.13858 * 14 13 12 34 34 H 1.09002 * 109.48813 * 181.65179 * 15 14 13 35 35 H 1.09002 * 109.48870 * 61.61068 * 15 14 13 36 36 H 1.08005 * 118.91200 * 180.28401 * 19 18 17 37 37 H 1.07997 * 124.30163 * 180.02562 * 23 22 21 38 38 H 1.08002 * 122.58987 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.48625 * 60.64585 * 26 16 15 40 40 H 1.09003 * 109.48941 * 180.69193 * 26 16 15 41 41 H 1.09002 * 109.48806 * 56.84348 * 27 13 12 42 42 H 1.09003 * 109.49203 * 296.77991 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8629 0.0000 13 7 2.1981 -5.9796 -0.0005 14 6 2.9614 -6.0203 1.2546 15 6 3.9965 -7.1455 1.1826 16 7 3.3118 -8.4236 0.9439 17 6 4.2106 -9.4751 0.9433 18 7 5.5027 -9.2559 1.1361 19 6 6.3715 -10.2506 1.1437 20 7 6.0086 -11.4976 0.9512 21 6 4.7256 -11.8188 0.7423 22 16 3.9498 -13.3703 0.4600 23 6 2.3649 -12.6305 0.3334 24 6 2.4302 -11.3231 0.4932 25 6 3.7641 -10.8045 0.7311 26 6 2.5487 -8.3825 -0.3114 27 6 1.5133 -7.2577 -0.2393 28 1 -0.4849 0.8402 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6172 -4.9205 -0.8903 31 1 0.6165 -4.9208 0.8897 32 1 2.2823 -6.2037 2.0871 33 1 3.4698 -5.0676 1.4024 34 1 4.5442 -7.1966 2.1237 35 1 4.6924 -6.9478 0.3672 36 1 7.4159 -10.0305 1.3088 37 1 1.4514 -13.1764 0.1489 38 1 1.5581 -10.6875 0.4504 39 1 3.2278 -8.1988 -1.1440 40 1 2.0410 -9.3356 -0.4598 41 1 0.9656 -7.2066 -1.1804 42 1 0.8177 -7.4556 0.5763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108851864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:11 Heat of formation + Delta-G solvation = 68.061171 kcal Electronic energy + Delta-G solvation = -27401.686252 eV Core-core repulsion = 23509.170259 eV Total energy + Delta-G solvation = -3892.515993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58189 -39.44230 -38.03105 -36.52277 -35.70591 -33.89700 -32.78393 -31.30918 -31.02986 -30.32548 -28.40101 -25.74762 -25.46128 -24.10890 -23.30413 -23.12829 -21.58142 -20.05621 -19.26131 -18.92717 -18.09536 -17.84144 -16.47874 -16.13238 -15.84202 -15.69431 -15.33345 -15.14914 -14.82115 -14.67780 -14.53998 -14.26325 -14.13284 -13.80196 -13.59342 -13.43789 -13.12800 -12.58842 -12.38445 -12.05998 -11.66432 -11.52268 -11.45928 -11.41066 -11.28864 -11.12311 -11.10417 -10.91503 -10.79283 -10.40705 -10.23547 -9.72443 -9.52147 -9.47527 -8.90744 -8.51569 -8.33126 -8.01629 -7.91690 -6.43767 -3.84481 0.13515 0.66629 0.80241 1.48497 1.81717 3.04378 3.16595 3.25542 3.31157 3.46356 3.84690 3.89680 3.90013 4.08884 4.19480 4.20996 4.46042 4.68573 4.74496 4.88456 4.99448 5.11031 5.14130 5.22738 5.27792 5.43206 5.49558 5.52125 5.64850 5.68616 5.72435 5.77275 5.79816 5.89225 6.11734 6.20783 6.24096 6.38991 6.70712 6.77604 7.16506 7.27110 7.53534 7.82645 8.04177 8.59309 9.16097 9.52010 10.03465 10.73894 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.030047 B = 0.002038 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.641676 B =13735.376210 C =14516.369573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.047 3.953 13 N -0.518 5.518 14 C 0.051 3.949 15 C 0.072 3.928 16 N -0.472 5.472 17 C 0.420 3.580 18 N -0.560 5.560 19 C 0.342 3.658 20 N -0.519 5.519 21 C 0.104 3.896 22 S 0.155 5.845 23 C -0.207 4.207 24 C -0.090 4.090 25 C -0.199 4.199 26 C 0.059 3.941 27 C 0.054 3.946 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.204 0.796 37 H 0.177 0.823 38 H 0.155 0.845 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 -25.199 0.975 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.084 4.084 13 N -0.242 5.242 14 C -0.077 4.077 15 C -0.054 4.054 16 N -0.188 5.188 17 C 0.171 3.829 18 N -0.282 5.282 19 C 0.049 3.951 20 N -0.238 5.238 21 C -0.147 4.147 22 S 0.413 5.587 23 C -0.341 4.341 24 C -0.120 4.120 25 C -0.215 4.215 26 C -0.066 4.066 27 C -0.074 4.074 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.221 0.779 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.533 -26.300 0.992 26.555 hybrid contribution -1.719 2.108 0.214 2.728 sum 1.814 -24.192 1.206 24.290 Atomic orbital electron populations 1.69616 1.05936 1.28160 1.50587 1.25267 0.95642 0.99742 0.97323 0.85858 0.79234 0.80801 0.78408 1.20398 1.20952 1.19407 1.19695 0.93357 0.82169 1.47556 0.87886 1.41871 1.09198 1.04597 1.64339 1.19709 0.88407 0.84512 0.84547 1.90486 1.13662 1.86844 1.55165 1.21841 0.93835 0.91047 1.01695 1.61771 1.25415 1.01364 1.35694 1.22455 0.95683 1.00256 0.89286 1.22218 0.95629 0.84266 1.03331 1.58893 1.22695 1.04346 1.32853 1.20040 0.87797 0.89215 0.85881 1.68353 1.01222 1.37003 1.21587 1.24807 0.99765 0.81986 0.88534 1.68065 1.15299 1.22344 1.18083 1.23805 0.93186 0.98427 0.99259 1.84270 0.97097 1.03120 1.74209 1.25219 1.01542 0.98083 1.09294 1.20760 0.95738 0.94822 1.00655 1.20196 0.95095 0.94142 1.12102 1.22558 0.96272 1.00164 0.87638 1.22208 0.94683 0.88722 1.01808 0.91875 0.77491 0.89206 0.93232 0.94883 0.86632 0.89141 0.91292 0.77947 0.80563 0.82734 0.91972 0.88897 0.89359 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 3 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.92 5.29 -10.96 -0.06 -13.97 16 10 C 0.44 10.08 7.48 -10.98 -0.08 10.00 16 11 O -0.58 -15.03 13.92 5.55 0.08 -14.95 16 12 C 0.05 0.79 5.45 -4.98 -0.03 0.77 16 13 N -0.52 -8.15 4.44 -235.91 -1.05 -9.20 16 14 C 0.05 0.81 5.26 -3.76 -0.02 0.79 16 15 C 0.07 1.02 4.80 -3.76 -0.02 1.00 16 16 N -0.47 -5.91 4.71 -172.33 -0.81 -6.72 16 17 C 0.42 5.36 6.45 -154.57 -1.00 4.36 16 18 N -0.56 -7.28 8.82 -13.44 -0.12 -7.40 16 19 C 0.34 3.87 12.26 -92.34 -1.13 2.74 16 20 N -0.52 -6.36 10.47 -13.32 -0.14 -6.50 16 21 C 0.10 1.21 7.69 -16.08 -0.12 1.09 16 22 S 0.16 1.31 23.23 -107.50 -2.50 -1.19 16 23 C -0.21 -1.43 11.02 28.83 0.32 -1.11 16 24 C -0.09 -0.76 8.97 -38.78 -0.35 -1.11 16 25 C -0.20 -2.27 5.75 -105.24 -0.61 -2.88 16 26 C 0.06 0.65 5.32 -3.76 -0.02 0.63 16 27 C 0.05 0.63 5.61 -3.77 -0.02 0.61 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 29 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 30 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 31 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.12 2.22 5.85 -51.93 -0.30 1.92 16 34 H 0.09 1.26 7.85 -51.93 -0.41 0.86 16 35 H 0.07 1.09 8.06 -51.93 -0.42 0.68 16 36 H 0.20 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.16 1.06 6.45 -52.49 -0.34 0.72 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.79 4.61 -51.93 -0.24 0.55 16 41 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -32.27 356.98 -11.75 -44.01 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.91 Total: 9.14 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -3.32 Total: 9.07 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -1.45 Total: -67.28 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.95 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.50 Total: -1.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.27 -11.75 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108851864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.073 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds