Wall clock time and date at job start Wed Apr 1 2020 04:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00025 * 2 1 4 4 O 1.20831 * 120.00045 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00092 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47279 * 179.97438 * 5 3 2 7 7 C 1.36786 * 119.99955 * 264.93785 * 6 5 3 8 8 H 1.08000 * 120.00291 * 136.95154 * 7 6 5 9 9 C 1.39075 * 120.00035 * 316.95753 * 7 6 5 10 10 N 1.31348 * 119.99846 * 162.60331 * 9 7 6 11 11 Si 1.86796 * 119.99682 * 342.59998 * 9 7 6 12 12 H 1.48496 * 109.47271 * 92.81654 * 11 9 7 13 13 H 1.48504 * 109.46800 * 212.81508 * 11 9 7 14 14 H 1.48500 * 109.47548 * 332.81414 * 11 9 7 15 15 C 1.34773 * 120.00339 * 84.93307 * 6 5 3 16 16 O 1.21712 * 119.99798 * 4.46727 * 15 6 5 17 17 C 1.46804 * 120.00227 * 184.46318 * 15 6 5 18 18 O 1.34927 * 125.14281 * 355.70061 * 17 15 6 19 19 C 1.34851 * 110.85612 * 179.97438 * 18 17 15 20 20 C 1.38993 * 133.06746 * 180.02562 * 19 18 17 21 21 C 1.37745 * 120.07512 * 179.97438 * 20 19 18 22 22 C 1.39287 * 120.70242 * 359.97438 * 21 20 19 23 23 O 1.35969 * 119.91153 * 179.71979 * 22 21 20 24 24 C 1.42905 * 116.99927 * 0.02562 * 23 22 21 25 25 C 1.38044 * 120.17945 * 359.97438 * 22 21 20 26 26 C 1.39749 * 119.55056 * 0.03094 * 25 22 21 27 27 C 1.35969 * 125.13995 * 175.65750 * 17 15 6 28 28 C 1.50700 * 126.96579 * 0.04043 * 27 17 15 29 29 H 1.09006 * 109.47079 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47402 * 300.00008 * 1 2 3 31 31 H 1.09002 * 109.47096 * 60.00496 * 1 2 3 32 32 H 1.08998 * 109.47392 * 59.99874 * 5 3 2 33 33 H 1.08999 * 109.46869 * 299.99687 * 5 3 2 34 34 H 0.97003 * 119.99876 * 179.97438 * 10 9 7 35 35 H 1.07997 * 119.96507 * 359.97169 * 20 19 18 36 36 H 1.07995 * 119.64765 * 179.97438 * 21 20 19 37 37 H 1.08994 * 109.46989 * 179.97438 * 24 23 22 38 38 H 1.09003 * 109.46778 * 299.99692 * 24 23 22 39 39 H 1.09003 * 109.47074 * 59.98998 * 24 23 22 40 40 H 1.08002 * 120.22143 * 179.97438 * 25 22 21 41 41 H 1.08991 * 109.47349 * 90.02444 * 28 27 17 42 42 H 1.09004 * 109.46683 * 210.02467 * 28 27 17 43 43 H 1.08999 * 109.46673 * 330.01961 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2764 3.3052 -1.1804 8 1 3.9216 4.3088 -1.3630 9 6 5.0326 2.6486 -2.1454 10 7 5.0344 3.0820 -3.3853 11 14 6.0459 1.1506 -1.6781 12 1 5.2470 -0.0794 -1.9099 13 1 7.2758 1.1061 -2.5092 14 1 6.4208 1.2343 -0.2436 15 6 4.0735 3.3560 1.1620 16 8 3.8905 2.7789 2.2179 17 6 4.3941 4.7885 1.1544 18 8 4.6966 5.5108 0.0556 19 6 4.9414 6.7969 0.3789 20 6 5.2867 7.9150 -0.3712 21 6 5.4771 9.1302 0.2487 22 6 5.3270 9.2564 1.6277 23 8 5.5244 10.4625 2.2237 24 6 5.8827 11.5548 1.3747 25 6 4.9834 8.1592 2.3917 26 6 4.7882 6.9218 1.7721 27 6 4.4303 5.5883 2.2534 28 6 4.1562 5.1827 3.6787 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9564 0.7806 -0.8891 33 1 3.9556 0.7810 0.8909 34 1 5.5622 2.6244 -4.0583 35 1 5.4059 7.8308 -1.4413 36 1 5.7457 9.9943 -0.3408 37 1 6.0095 12.4554 1.9754 38 1 6.8168 11.3251 0.8619 39 1 5.0948 11.7168 0.6391 40 1 4.8672 8.2561 3.4610 41 1 5.0854 4.8639 4.1508 42 1 3.7436 6.0310 4.2248 43 1 3.4413 4.3600 3.6912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120663047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:20 Heat of formation + Delta-G solvation = -122.110307 kcal Electronic energy + Delta-G solvation = -30917.615399 eV Core-core repulsion = 26509.514579 eV Total energy + Delta-G solvation = -4408.100820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.42616 -41.75621 -40.70126 -40.23645 -37.70028 -37.44353 -36.93345 -34.77435 -34.11709 -31.58446 -31.28360 -30.09227 -28.71558 -27.96580 -27.81738 -26.87453 -24.83562 -23.31259 -22.64285 -21.51904 -21.04258 -19.86960 -19.27365 -18.98351 -18.31885 -18.01489 -17.53679 -17.34552 -17.22300 -17.00069 -16.76930 -16.53160 -16.20653 -15.53673 -15.39857 -15.08075 -14.75333 -14.57139 -14.44660 -14.33178 -14.14585 -14.00198 -13.97871 -13.59525 -13.47610 -13.26084 -13.21448 -13.01817 -12.94247 -12.60715 -12.41596 -11.99052 -11.84833 -11.78071 -11.74551 -11.71327 -11.32480 -10.92045 -10.87466 -10.04085 -9.27995 -8.92961 -8.57476 -6.30203 -0.47125 0.35760 0.75230 1.07653 1.16967 1.32828 1.40649 1.47749 1.74127 2.10505 2.17963 2.23692 2.47932 2.61293 2.90867 3.49307 3.60086 3.78962 3.81998 3.85750 3.98117 4.07754 4.12544 4.19980 4.29347 4.29987 4.34284 4.47231 4.47755 4.63977 4.67435 4.75301 4.79384 4.84308 4.97428 5.09605 5.13172 5.17042 5.20755 5.24612 5.37961 5.48241 5.90588 6.07966 6.15526 6.41803 6.65761 6.77265 7.08067 7.37533 8.55710 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.003512 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.753328 B = 7971.438594 C = 9021.494543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.455 3.545 4 O -0.527 6.527 5 C 0.099 3.901 6 N -0.443 5.443 7 C -0.347 4.347 8 H 0.084 0.916 9 C 0.034 3.966 10 N -0.885 5.885 11 Si 0.913 3.087 12 H -0.234 1.234 13 H -0.273 1.273 14 H -0.256 1.256 15 C 0.556 3.444 16 O -0.572 6.572 17 C -0.014 4.014 18 O -0.167 6.167 19 C -0.005 4.005 20 C -0.079 4.079 21 C -0.154 4.154 22 C 0.107 3.893 23 O -0.326 6.326 24 C 0.014 3.986 25 C -0.110 4.110 26 C -0.110 4.110 27 C -0.120 4.120 28 C -0.076 4.076 29 H 0.143 0.857 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.285 0.715 35 H 0.145 0.855 36 H 0.177 0.823 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.152 0.848 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 6.955 7.175 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.297 3.703 4 O -0.415 6.415 5 C -0.025 4.025 6 N -0.162 5.162 7 C -0.474 4.474 8 H 0.101 0.899 9 C -0.172 4.172 10 N -0.520 5.520 11 Si 0.735 3.265 12 H -0.159 1.159 13 H -0.198 1.198 14 H -0.180 1.180 15 C 0.347 3.653 16 O -0.458 6.458 17 C -0.064 4.064 18 O -0.068 6.068 19 C -0.054 4.054 20 C -0.097 4.097 21 C -0.172 4.172 22 C 0.061 3.939 23 O -0.241 6.241 24 C -0.080 4.080 25 C -0.129 4.129 26 C -0.111 4.111 27 C -0.124 4.124 28 C -0.132 4.132 29 H 0.161 0.839 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.154 0.846 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.194 0.806 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.169 0.831 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.337 6.865 7.369 10.077 hybrid contribution 0.116 -0.409 -0.822 0.925 sum 0.453 6.456 6.547 9.206 Atomic orbital electron populations 1.23587 0.74698 1.06011 1.02234 1.86481 1.25219 1.31901 1.83978 1.24454 0.92632 0.81734 0.71513 1.90625 1.67307 1.37705 1.45869 1.21585 0.87854 0.86229 1.06835 1.43235 1.57181 1.09560 1.06229 1.19034 1.34418 1.01728 0.92252 0.89889 1.26041 0.96037 1.00977 0.94161 1.69755 1.38198 1.42418 1.01650 0.86313 0.79915 0.80112 0.80135 1.15881 1.19831 1.17997 1.17198 0.80047 0.84273 0.83742 1.90667 1.56495 1.67870 1.30767 1.21715 1.06848 0.92641 0.85231 1.84692 1.71415 1.17816 1.32859 1.20529 1.04593 0.85467 0.94775 1.20055 1.00706 0.88399 1.00562 1.21362 1.04369 0.97901 0.93562 1.18639 0.98110 0.86013 0.91094 1.86066 1.84602 1.15858 1.37534 1.23421 1.00849 0.87425 0.96288 1.19725 1.04295 0.87978 1.00896 1.19553 1.05011 0.93899 0.92647 1.21609 1.03275 0.90505 0.96980 1.20317 1.02807 1.02181 0.87901 0.83891 0.92232 0.92508 0.86194 0.84582 0.90472 0.83743 0.80588 0.85970 0.91444 0.91515 0.83072 0.89911 0.89178 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.44 10.56 -51.39 -0.54 -12.98 16 3 C 0.45 19.63 7.99 71.24 0.57 20.20 16 4 O -0.53 -26.40 16.07 21.95 0.35 -26.05 16 5 C 0.10 4.30 4.56 85.63 0.39 4.69 16 6 N -0.44 -22.54 1.62 -644.02 -1.05 -23.59 16 7 C -0.35 -19.30 8.37 84.12 0.70 -18.60 16 8 H 0.08 5.20 6.10 -2.91 -0.02 5.18 16 9 C 0.03 1.79 5.32 84.97 0.45 2.25 16 10 N -0.89 -49.13 13.95 21.68 0.30 -48.83 16 11 Si 0.91 38.99 25.07 68.60 1.72 40.71 16 12 H -0.23 -8.77 6.66 99.48 0.66 -8.10 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 15 C 0.56 28.19 7.43 86.48 0.64 28.83 16 16 O -0.57 -28.34 14.31 -4.39 -0.06 -28.40 16 17 C -0.01 -0.68 6.79 23.98 0.16 -0.52 16 18 O -0.17 -8.31 7.36 -14.16 -0.10 -8.42 16 19 C -0.01 -0.23 7.40 23.06 0.17 -0.06 16 20 C -0.08 -2.58 10.05 22.33 0.22 -2.35 16 21 C -0.15 -3.85 9.01 22.41 0.20 -3.65 16 22 C 0.11 2.83 6.68 22.48 0.15 2.98 16 23 O -0.33 -7.16 10.49 -93.21 -0.98 -8.14 16 24 C 0.01 0.18 9.81 113.37 1.11 1.29 16 25 C -0.11 -3.35 10.04 22.59 0.23 -3.12 16 26 C -0.11 -4.16 6.36 -20.23 -0.13 -4.29 16 27 C -0.12 -4.94 6.39 -18.32 -0.12 -5.06 16 28 C -0.08 -2.54 9.77 71.24 0.70 -1.85 16 29 H 0.14 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.06 1.56 8.13 -2.38 -0.02 1.54 16 31 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.12 4.99 3.85 -2.39 -0.01 4.98 16 33 H 0.14 5.26 7.52 -2.39 -0.02 5.24 16 34 H 0.29 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.18 2.89 6.26 -2.91 -0.02 2.88 16 37 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 39 H 0.07 0.70 7.65 -2.39 -0.02 0.68 16 40 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 41 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.07 2.58 6.48 -2.39 -0.02 2.57 16 Total: -1.00 -74.07 365.61 7.32 -66.75 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 1.03 Total: 26.28 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 6.65 Total: 22.66 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -0.74 Total: -72.42 kcal Atomic # 8 Polarization: -82.65 SS G_CDS: -1.34 Total: -83.98 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.72 Total: 40.71 kcal Total: -74.07 7.32 -66.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120663047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.360 kcal (2) G-P(sol) polarization free energy of solvation -74.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds