Wall clock time and date at job start Wed Apr 1 2020 04:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31069 * 126.66158 * 2 1 4 4 N 1.28835 * 107.99356 * 180.02562 * 3 2 1 5 5 N 1.28742 * 109.39735 * 359.73314 * 4 3 2 6 6 N 1.29015 * 108.80425 * 0.44146 * 5 4 3 7 7 C 1.46502 * 126.43674 * 179.82960 * 6 5 4 8 8 C 1.50703 * 109.47302 * 269.68927 * 7 6 5 9 9 O 1.21298 * 119.99871 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00111 * 179.97438 * 8 7 6 11 11 C 1.40143 * 119.99976 * 185.42972 * 10 8 7 12 12 C 1.38644 * 120.09846 * 19.36959 * 11 10 8 13 13 C 1.38252 * 120.00992 * 180.23503 * 12 11 10 14 14 C 1.38301 * 120.20564 * 359.48367 * 13 12 11 15 15 C 1.38201 * 120.19881 * 0.51871 * 14 13 12 16 16 C 1.38786 * 119.98876 * 359.74066 * 15 14 13 17 17 S 1.76197 * 120.10307 * 179.97438 * 16 15 14 18 18 C 1.81398 * 103.00103 * 354.11923 * 17 16 15 19 19 H 1.08997 * 109.47146 * 53.77135 * 18 17 16 20 20 C 1.53001 * 109.47337 * 173.77076 * 18 17 16 21 21 C 1.50698 * 109.47260 * 293.77241 * 18 17 16 22 22 H 1.08000 * 119.99994 * 0.02562 * 21 18 17 23 23 C 1.37883 * 120.00082 * 180.02562 * 21 18 17 24 24 N 1.31509 * 119.99755 * 359.97438 * 23 21 18 25 25 Si 1.86800 * 119.99898 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47252 * 59.99459 * 25 23 21 27 27 H 1.48499 * 109.47386 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46963 * 299.99376 * 25 23 21 29 29 H 1.08998 * 109.47132 * 269.95314 * 1 2 3 30 30 H 1.09006 * 109.47365 * 29.95375 * 1 2 3 31 31 H 1.09003 * 109.47253 * 149.95132 * 1 2 3 32 32 H 1.08994 * 109.47339 * 149.68994 * 7 6 5 33 33 H 1.09000 * 109.46843 * 29.68630 * 7 6 5 34 34 H 0.96991 * 119.99602 * 5.43678 * 10 8 7 35 35 H 1.08009 * 119.99614 * 359.95196 * 12 11 10 36 36 H 1.07998 * 119.90091 * 179.72938 * 13 12 11 37 37 H 1.07998 * 119.90239 * 180.26096 * 14 13 12 38 38 H 1.08005 * 120.00460 * 179.72032 * 15 14 13 39 39 H 1.09003 * 109.46867 * 66.09984 * 20 18 17 40 40 H 1.08999 * 109.47107 * 186.09908 * 20 18 17 41 41 H 1.08994 * 109.47217 * 306.10097 * 20 18 17 42 42 H 0.97003 * 119.99527 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2896 1.0514 0.0000 4 7 3.5101 0.6390 -0.0005 5 7 3.5265 -0.6483 0.0048 6 7 2.3107 -1.0797 -0.0006 7 6 1.8847 -2.4814 -0.0009 8 6 1.7382 -2.9616 -1.4219 9 8 1.9675 -2.2073 -2.3437 10 7 1.3534 -4.2296 -1.6684 11 6 1.3267 -4.7104 -2.9845 12 6 2.0512 -4.0654 -3.9752 13 6 2.0197 -4.5385 -5.2739 14 6 1.2754 -5.6611 -5.5876 15 6 0.5500 -6.3107 -4.6069 16 6 0.5715 -5.8397 -3.3016 17 16 -0.3528 -6.6651 -2.0490 18 6 -1.2756 -7.9179 -2.9814 19 1 -0.5823 -8.5107 -3.5779 20 6 -2.0211 -8.8323 -2.0073 21 6 -2.2667 -7.2383 -3.8909 22 1 -2.3342 -6.1606 -3.9067 23 6 -3.0871 -7.9925 -4.7028 24 7 -3.0044 -9.3049 -4.6838 25 14 -4.3150 -7.1501 -5.8306 26 1 -3.5910 -6.2634 -6.7765 27 1 -5.0707 -8.1756 -6.5938 28 1 -5.2594 -6.3415 -5.0183 29 1 -0.3633 -0.0008 1.0276 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3634 -0.8896 -0.5146 32 1 0.9278 -2.5705 0.5131 33 1 2.6309 -3.0879 0.5124 34 1 1.0948 -4.8091 -0.9350 35 1 2.6366 -3.1906 -3.7332 36 1 2.5812 -4.0322 -6.0450 37 1 1.2577 -6.0289 -6.6029 38 1 -0.0337 -7.1845 -4.8563 39 1 -2.7896 -8.2600 -1.4875 40 1 -2.4870 -9.6485 -2.5593 41 1 -1.3180 -9.2397 -1.2809 42 1 -3.5814 -9.8354 -5.2553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123350645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:56 Heat of formation + Delta-G solvation = 96.403393 kcal Electronic energy + Delta-G solvation = -27389.501963 eV Core-core repulsion = 23498.214981 eV Total energy + Delta-G solvation = -3891.286982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.28150 -41.80850 -39.52481 -36.70824 -36.27759 -35.88137 -34.63871 -32.45718 -31.83653 -31.65953 -29.96997 -28.98395 -27.34210 -25.07544 -24.33804 -23.95736 -23.46892 -22.66334 -21.66766 -19.50483 -18.95320 -18.52046 -18.31579 -17.78492 -17.47606 -17.01950 -16.92575 -16.03809 -15.90386 -15.72834 -15.34959 -15.12362 -14.94855 -14.91457 -14.56188 -14.18155 -14.08482 -13.55571 -13.49369 -13.44226 -13.38871 -13.04815 -12.99594 -12.85744 -12.69880 -12.40424 -12.36278 -12.26934 -12.26160 -11.90992 -11.66225 -11.30657 -11.11795 -10.92100 -10.84730 -10.60919 -10.40850 -9.29990 -8.31235 -7.97792 -6.33565 0.05675 0.15805 0.39999 0.77387 0.94239 1.12472 1.26963 1.40161 1.42526 1.47981 1.74614 1.89533 2.39226 2.81849 3.05540 3.10215 3.14852 3.19519 3.73402 3.88771 3.97499 4.16408 4.24651 4.36046 4.50190 4.52688 4.55522 4.58958 4.67808 4.69681 4.82784 4.85918 4.90399 4.94261 5.15827 5.20710 5.30645 5.38040 5.44814 5.61861 5.63398 5.78993 6.02370 6.05416 6.16306 6.68481 6.74819 7.33581 7.47494 8.83804 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.002762 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.843819 B =10135.076886 C =10382.830495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.207 3.793 3 N -0.340 5.340 4 N -0.105 5.105 5 N -0.101 5.101 6 N -0.295 5.295 7 C 0.096 3.904 8 C 0.502 3.498 9 O -0.544 6.544 10 N -0.638 5.638 11 C 0.148 3.852 12 C -0.139 4.139 13 C -0.112 4.112 14 C -0.127 4.127 15 C -0.110 4.110 16 C -0.102 4.102 17 S -0.157 6.157 18 C 0.091 3.909 19 H 0.028 0.972 20 C -0.116 4.116 21 C -0.523 4.523 22 H 0.054 0.946 23 C 0.033 3.967 24 N -0.907 5.907 25 Si 0.945 3.055 26 H -0.276 1.276 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.198 0.802 33 H 0.181 0.819 34 H 0.428 0.572 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 8.701 10.353 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 N -0.190 5.190 4 N -0.099 5.099 5 N -0.088 5.088 6 N -0.097 5.097 7 C -0.028 4.028 8 C 0.288 3.712 9 O -0.422 6.422 10 N -0.283 5.283 11 C 0.047 3.953 12 C -0.160 4.160 13 C -0.133 4.133 14 C -0.148 4.148 15 C -0.134 4.134 16 C -0.217 4.217 17 S 0.088 5.912 18 C -0.037 4.037 19 H 0.045 0.955 20 C -0.175 4.175 21 C -0.562 4.562 22 H 0.072 0.928 23 C -0.169 4.169 24 N -0.546 5.546 25 Si 0.771 3.229 26 H -0.201 1.201 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.150 0.850 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.215 0.785 33 H 0.198 0.802 34 H 0.268 0.732 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.638 9.859 10.978 16.180 hybrid contribution -1.493 -1.060 -2.182 2.848 sum 5.145 8.800 8.796 13.464 Atomic orbital electron populations 1.20757 0.79093 1.06678 1.07254 1.26882 1.00252 0.81639 0.98280 1.74938 0.96973 1.25930 1.21113 1.78551 1.13983 1.01285 1.16055 1.78788 1.03638 1.07990 1.18365 1.48046 1.03978 1.10011 1.47638 1.22441 1.09755 0.76152 0.94460 1.21057 0.76677 0.81323 0.92097 1.90738 1.49635 1.55246 1.46533 1.43210 1.64711 1.12988 1.07439 1.17224 0.98522 0.94187 0.85377 1.21538 1.00162 1.01543 0.92741 1.21297 0.99408 0.96119 0.96448 1.21293 0.97554 0.96279 0.99635 1.21391 0.98929 1.01019 0.92071 1.21434 1.02035 0.99913 0.98313 1.83823 1.50629 1.42025 1.14697 1.20895 0.95692 0.91957 0.95126 0.95452 1.21491 0.98954 0.99875 0.97225 1.21262 1.19825 0.92710 1.22391 0.92810 1.25511 0.98259 0.95288 0.97809 1.69942 1.39830 1.05099 1.39686 0.85801 0.79500 0.78372 0.79249 1.20146 1.20835 1.19702 0.84959 0.87528 0.88171 0.78505 0.80157 0.73235 0.83463 0.83590 0.84536 0.85847 0.94170 0.90666 0.93807 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.02 71.23 0.71 0.02 16 2 C 0.21 3.97 8.13 138.13 1.12 5.10 16 3 N -0.34 -9.24 12.36 -50.46 -0.62 -9.86 16 4 N -0.11 -3.19 13.43 37.01 0.50 -2.69 16 5 N -0.10 -2.67 13.29 37.02 0.49 -2.18 16 6 N -0.29 -5.54 2.83 -341.98 -0.97 -6.51 16 7 C 0.10 0.91 6.55 85.63 0.56 1.47 16 8 C 0.50 9.81 7.75 87.66 0.68 10.49 16 9 O -0.54 -15.76 13.32 -3.08 -0.04 -15.80 16 10 N -0.64 -13.60 5.24 -303.01 -1.59 -15.18 16 11 C 0.15 4.49 6.52 38.22 0.25 4.74 16 12 C -0.14 -4.26 8.79 22.37 0.20 -4.06 16 13 C -0.11 -3.26 10.04 22.29 0.22 -3.03 16 14 C -0.13 -4.09 10.04 22.28 0.22 -3.86 16 15 C -0.11 -4.16 8.76 22.39 0.20 -3.96 16 16 C -0.10 -3.59 6.04 22.71 0.14 -3.45 16 17 S -0.16 -5.49 19.90 -56.49 -1.12 -6.61 16 18 C 0.09 4.02 2.01 29.85 0.06 4.08 16 19 H 0.03 1.34 7.10 -2.39 -0.02 1.32 16 20 C -0.12 -4.85 8.88 71.98 0.64 -4.21 16 21 C -0.52 -25.47 6.73 25.60 0.17 -25.30 16 22 H 0.05 2.71 7.71 -2.91 -0.02 2.69 16 23 C 0.03 1.66 5.30 84.66 0.45 2.11 16 24 N -0.91 -46.87 11.39 21.45 0.24 -46.63 16 25 Si 0.94 40.45 29.54 68.60 2.03 42.47 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 29 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.10 0.68 7.81 -2.39 -0.02 0.66 16 32 H 0.20 -0.16 7.75 -2.39 -0.02 -0.18 16 33 H 0.18 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.43 6.92 7.50 -92.72 -0.70 6.22 16 35 H 0.15 4.63 5.39 -2.91 -0.02 4.62 16 36 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.12 5.37 5.07 -2.91 -0.01 5.36 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 3.52 6.26 -2.39 -0.01 3.51 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 Total: -1.00 -72.02 367.90 4.93 -67.09 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.39 Total: 15.78 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 5.62 Total: -19.88 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -1.95 Total: -83.05 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.04 Total: -15.80 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -1.12 Total: -6.61 kcal Total: -72.02 4.93 -67.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123350645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.492 kcal (2) G-P(sol) polarization free energy of solvation -72.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds