Wall clock time and date at job start Wed Apr 1 2020 04:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47174 * 2 1 4 4 N 1.29500 * 126.14582 * 89.95631 * 3 2 1 5 5 N 1.26251 * 116.58539 * 179.77331 * 4 3 2 6 6 C 1.29886 * 117.65788 * 0.50399 * 5 4 3 7 7 N 1.39085 * 125.65533 * 179.80490 * 6 5 4 8 8 C 1.34775 * 119.99664 * 359.68328 * 7 6 5 9 9 O 1.21585 * 119.99896 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99797 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00261 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.46984 * 270.00419 * 11 10 8 13 13 H 1.08001 * 119.99815 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00137 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99959 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00188 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47187 * 89.99803 * 16 14 12 18 18 H 1.48505 * 109.47138 * 209.99499 * 16 14 12 19 19 H 1.48499 * 109.46965 * 329.99297 * 16 14 12 20 20 C 1.46501 * 119.99994 * 180.02562 * 10 8 7 21 21 C 1.50706 * 109.46941 * 269.99872 * 20 10 8 22 22 C 1.38227 * 119.61686 * 95.02727 * 21 20 10 23 23 C 1.38627 * 119.15663 * 179.70253 * 22 21 20 24 24 C 1.38669 * 118.42388 * 0.51169 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.50231 * 24 23 22 26 26 N 1.31856 * 119.61480 * 274.99645 * 21 20 10 27 27 S 1.71314 * 108.69113 * 359.53268 * 6 5 4 28 28 H 1.08997 * 109.47135 * 299.99823 * 1 2 3 29 29 H 1.09000 * 109.47321 * 60.00133 * 1 2 3 30 30 H 1.09002 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47454 * 239.99962 * 2 1 3 32 32 H 1.09000 * 109.47321 * 119.99867 * 2 1 3 33 33 H 0.97000 * 119.99607 * 179.69044 * 7 6 5 34 34 H 1.08997 * 109.46723 * 29.99772 * 11 10 8 35 35 H 1.08997 * 109.47310 * 149.99801 * 11 10 8 36 36 H 0.97000 * 120.00071 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.47174 * 150.00085 * 20 10 8 38 38 H 1.08997 * 109.46998 * 29.99942 * 20 10 8 39 39 H 1.07998 * 120.41947 * 359.94797 * 22 21 20 40 40 H 1.08008 * 120.78691 * 180.26734 * 23 22 21 41 41 H 1.08002 * 120.42244 * 179.78749 * 24 23 22 42 42 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2862 2.1413 1.0457 5 7 2.7056 3.3135 0.8361 6 6 2.8353 3.6956 -0.3985 7 7 3.2774 4.9458 -0.8181 8 6 3.6080 5.8837 0.0915 9 8 3.5203 5.6368 1.2788 10 7 4.0358 7.0954 -0.3150 11 6 4.1409 7.3931 -1.7456 12 6 5.5167 7.0221 -2.2361 13 1 6.2405 6.6065 -1.5507 14 6 5.8518 7.2142 -3.5596 15 7 4.9705 7.7208 -4.3942 16 14 7.5573 6.7549 -4.1675 17 1 7.5544 5.3440 -4.6308 18 1 7.9377 7.6449 -5.2938 19 1 8.5357 6.9107 -3.0613 20 6 4.3958 8.1148 0.6737 21 6 3.1794 8.9374 1.0127 22 6 2.4165 8.6059 2.1167 23 6 1.3031 9.3728 2.4233 24 6 0.9912 10.4428 1.5982 25 6 1.8006 10.7135 0.5115 26 7 2.8556 9.9653 0.2531 27 16 2.3791 2.4017 -1.4245 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3475 5.1426 -1.7653 34 1 3.3932 6.8186 -2.2921 35 1 3.9718 8.4575 -1.9086 36 1 5.2061 7.8555 -5.3255 37 1 5.1695 8.7629 0.2622 38 1 4.7695 7.6301 1.5757 39 1 2.6867 7.7625 2.7349 40 1 0.6910 9.1401 3.2821 41 1 0.1291 11.0596 1.8050 42 1 1.5668 11.5475 -0.1336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134477458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:24 Heat of formation + Delta-G solvation = 83.554082 kcal Electronic energy + Delta-G solvation = -27559.353322 eV Core-core repulsion = 23667.509152 eV Total energy + Delta-G solvation = -3891.844170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04542 -40.13884 -39.36112 -35.65455 -34.93132 -33.99170 -32.86310 -32.20008 -31.42879 -29.35321 -27.70360 -26.72171 -25.54431 -23.63856 -23.32001 -22.93388 -22.13088 -20.87022 -19.66581 -18.35735 -17.53564 -16.98887 -16.67824 -16.39749 -15.84156 -15.78246 -15.26006 -15.21432 -14.72000 -14.58282 -14.36957 -14.03194 -13.66540 -13.27392 -13.11564 -13.03002 -12.92175 -12.63377 -12.44397 -11.95792 -11.77823 -11.61668 -11.42741 -11.34992 -11.02679 -10.96784 -10.85933 -10.35312 -10.29009 -10.01140 -9.89591 -9.66097 -9.44093 -9.41823 -9.18193 -8.82045 -8.64950 -8.44457 -7.86292 -6.27274 -4.36578 0.69581 0.74331 1.28441 1.40157 1.50930 2.83678 2.93310 3.17689 3.25838 3.29837 3.71352 3.92893 4.22306 4.26085 4.46053 4.59657 4.81532 4.97730 5.02406 5.02828 5.05697 5.11640 5.22402 5.25423 5.38041 5.60387 5.64100 5.76420 5.77549 5.81767 5.99017 6.00950 6.17851 6.33268 6.38421 6.44901 6.55280 6.90672 6.93790 7.03947 7.48402 7.67470 7.92166 8.21746 8.30618 8.69911 8.87595 9.04741 9.32748 10.78959 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.007000 B = 0.004392 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3998.920954 B = 6373.497177 C = 9580.352164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.034 4.034 3 C -0.015 4.015 4 N -0.225 5.225 5 N -0.280 5.280 6 C 0.271 3.729 7 N -0.625 5.625 8 C 0.703 3.297 9 O -0.554 6.554 10 N -0.596 5.596 11 C 0.237 3.763 12 C -0.547 4.547 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.187 3.813 21 C 0.115 3.885 22 C -0.148 4.148 23 C -0.084 4.084 24 C -0.180 4.180 25 C 0.093 3.907 26 N -0.463 5.463 27 S 0.092 5.908 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.433 0.567 34 H 0.024 0.976 35 H 0.056 0.944 36 H 0.267 0.733 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 -6.185 6.020 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C -0.298 4.298 4 N -0.061 5.061 5 N -0.125 5.125 6 C -0.101 4.101 7 N -0.281 5.281 8 C 0.402 3.598 9 O -0.428 6.428 10 N -0.330 5.330 11 C 0.117 3.883 12 C -0.585 4.585 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.062 3.938 21 C -0.024 4.024 22 C -0.169 4.169 23 C -0.110 4.110 24 C -0.200 4.200 25 C -0.065 4.065 26 N -0.172 5.172 27 S 0.330 5.670 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.275 0.725 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.158 0.842 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.717 -5.815 6.242 12.197 hybrid contribution 0.372 -0.024 -0.451 0.585 sum -8.345 -5.839 5.791 11.716 Atomic orbital electron populations 1.21793 0.93632 1.02428 1.02849 1.20044 0.96515 0.86650 1.04331 1.29753 1.08169 1.03101 0.88805 1.71371 1.10286 0.98284 1.26193 1.71597 1.19518 1.07124 1.14255 1.25659 0.99189 0.92701 0.92516 1.42439 1.65586 1.07997 1.12034 1.15844 0.78786 0.80726 0.84403 1.90965 1.58507 1.79436 1.13879 1.47363 1.66504 1.09526 1.09567 1.19487 0.96794 0.99034 0.72955 1.21517 0.98524 1.43761 0.94710 0.91806 1.24942 0.97570 0.94541 0.96544 1.69927 1.34543 1.43218 1.04771 0.86495 0.84032 0.78395 0.78600 1.20490 1.20959 1.19669 1.20082 0.92205 0.88293 0.93238 1.21888 0.97271 0.92480 0.90738 1.22169 0.95625 1.00274 0.98799 1.21559 0.96297 0.94281 0.98862 1.22098 1.01405 0.99226 0.97263 1.22756 0.90604 0.97879 0.95212 1.67589 1.16435 1.04728 1.28477 1.84795 1.64053 1.06548 1.11559 0.91895 0.92312 0.91404 0.89522 0.88507 0.72490 0.95854 0.92593 0.92359 0.88042 0.88894 0.84230 0.85265 0.85303 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.03 -0.30 6.56 -27.88 -0.18 -0.49 16 3 C -0.02 -0.21 7.05 -13.26 -0.09 -0.30 16 4 N -0.23 -3.99 11.65 33.58 0.39 -3.60 16 5 N -0.28 -5.69 9.73 29.97 0.29 -5.40 16 6 C 0.27 5.03 8.14 -87.05 -0.71 4.32 16 7 N -0.63 -12.27 5.27 -17.32 -0.09 -12.36 16 8 C 0.70 15.04 8.24 -86.92 -0.72 14.33 16 9 O -0.55 -12.73 14.55 5.29 0.08 -12.65 16 10 N -0.60 -12.44 2.44 -182.18 -0.44 -12.88 16 11 C 0.24 5.47 4.93 -5.19 -0.03 5.45 16 12 C -0.55 -13.69 9.39 -34.44 -0.32 -14.01 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -23.61 13.29 55.43 0.74 -22.87 16 16 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 C 0.19 3.48 5.71 -5.19 -0.03 3.45 16 21 C 0.12 2.04 6.36 -82.58 -0.53 1.52 16 22 C -0.15 -2.36 9.72 -39.44 -0.38 -2.74 16 23 C -0.08 -1.12 10.18 -39.28 -0.40 -1.52 16 24 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 25 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 26 N -0.46 -8.26 10.27 -9.47 -0.10 -8.36 16 27 S 0.09 1.28 23.31 -107.50 -2.51 -1.23 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.43 8.20 6.55 -40.82 -0.27 7.93 16 34 H 0.02 0.55 6.36 -51.93 -0.33 0.22 16 35 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.10 1.90 8.07 -51.93 -0.42 1.48 16 38 H 0.09 1.65 7.32 -51.93 -0.38 1.27 16 39 H 0.14 2.25 8.01 -52.49 -0.42 1.83 16 40 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -31.69 379.70 -9.82 -41.51 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.16 Total: 7.75 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -3.71 Total: 9.34 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: 0.79 Total: -65.47 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.51 Total: -1.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.69 -9.82 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134477458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.064 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds