Wall clock time and date at job start Wed Apr 1 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47174 * 2 1 4 4 N 1.29500 * 126.14582 * 89.95631 * 3 2 1 5 5 N 1.26251 * 116.58539 * 179.77331 * 4 3 2 6 6 C 1.29886 * 117.65788 * 0.50399 * 5 4 3 7 7 N 1.39085 * 125.65533 * 179.80490 * 6 5 4 8 8 C 1.34775 * 119.99664 * 359.68328 * 7 6 5 9 9 O 1.21585 * 119.99896 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99797 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00261 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.46984 * 270.00419 * 11 10 8 13 13 H 1.08001 * 119.99815 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00137 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99959 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00188 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47187 * 89.99803 * 16 14 12 18 18 H 1.48505 * 109.47138 * 209.99499 * 16 14 12 19 19 H 1.48499 * 109.46965 * 329.99297 * 16 14 12 20 20 C 1.46501 * 119.99994 * 180.02562 * 10 8 7 21 21 C 1.50706 * 109.46941 * 269.99872 * 20 10 8 22 22 C 1.38227 * 119.61686 * 95.02727 * 21 20 10 23 23 C 1.38627 * 119.15663 * 179.70253 * 22 21 20 24 24 C 1.38669 * 118.42388 * 0.51169 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.50231 * 24 23 22 26 26 N 1.31856 * 119.61480 * 274.99645 * 21 20 10 27 27 S 1.71314 * 108.69113 * 359.53268 * 6 5 4 28 28 H 1.08997 * 109.47135 * 299.99823 * 1 2 3 29 29 H 1.09000 * 109.47321 * 60.00133 * 1 2 3 30 30 H 1.09002 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47454 * 239.99962 * 2 1 3 32 32 H 1.09000 * 109.47321 * 119.99867 * 2 1 3 33 33 H 0.97000 * 119.99607 * 179.69044 * 7 6 5 34 34 H 1.08997 * 109.46723 * 29.99772 * 11 10 8 35 35 H 1.08997 * 109.47310 * 149.99801 * 11 10 8 36 36 H 0.97000 * 120.00071 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.47174 * 150.00085 * 20 10 8 38 38 H 1.08997 * 109.46998 * 29.99942 * 20 10 8 39 39 H 1.07998 * 120.41947 * 359.94797 * 22 21 20 40 40 H 1.08008 * 120.78691 * 180.26734 * 23 22 21 41 41 H 1.08002 * 120.42244 * 179.78749 * 24 23 22 42 42 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2862 2.1413 1.0457 5 7 2.7056 3.3135 0.8361 6 6 2.8353 3.6956 -0.3985 7 7 3.2774 4.9458 -0.8181 8 6 3.6080 5.8837 0.0915 9 8 3.5203 5.6368 1.2788 10 7 4.0358 7.0954 -0.3150 11 6 4.1409 7.3931 -1.7456 12 6 5.5167 7.0221 -2.2361 13 1 6.2405 6.6065 -1.5507 14 6 5.8518 7.2142 -3.5596 15 7 4.9705 7.7208 -4.3942 16 14 7.5573 6.7549 -4.1675 17 1 7.5544 5.3440 -4.6308 18 1 7.9377 7.6449 -5.2938 19 1 8.5357 6.9107 -3.0613 20 6 4.3958 8.1148 0.6737 21 6 3.1794 8.9374 1.0127 22 6 2.4165 8.6059 2.1167 23 6 1.3031 9.3728 2.4233 24 6 0.9912 10.4428 1.5982 25 6 1.8006 10.7135 0.5115 26 7 2.8556 9.9653 0.2531 27 16 2.3791 2.4017 -1.4245 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3475 5.1426 -1.7653 34 1 3.3932 6.8186 -2.2921 35 1 3.9718 8.4575 -1.9086 36 1 5.2061 7.8555 -5.3255 37 1 5.1695 8.7629 0.2622 38 1 4.7695 7.6301 1.5757 39 1 2.6867 7.7625 2.7349 40 1 0.6910 9.1401 3.2821 41 1 0.1291 11.0596 1.8050 42 1 1.5668 11.5475 -0.1336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134477458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:23 Heat of formation + Delta-G solvation = 64.508708 kcal Electronic energy + Delta-G solvation = -27560.179191 eV Core-core repulsion = 23667.509152 eV Total energy + Delta-G solvation = -3892.670039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41728 -41.50346 -40.73813 -37.16804 -36.50414 -34.97396 -34.71159 -33.39190 -32.75899 -30.57451 -29.47032 -28.09760 -26.83300 -25.15485 -24.47996 -24.31631 -23.33502 -22.19492 -21.01204 -19.79799 -18.95220 -18.76548 -18.13193 -17.70735 -17.21680 -17.10084 -16.69529 -16.51109 -16.35537 -15.87281 -15.61559 -15.14814 -14.87265 -14.56229 -14.39781 -14.36941 -14.23475 -14.01010 -13.62086 -13.56568 -13.14553 -12.80490 -12.68931 -12.64577 -12.60775 -12.35078 -12.16937 -12.12077 -11.78998 -11.66424 -11.34192 -10.89556 -10.81633 -10.64347 -10.60653 -10.42050 -10.00172 -9.91863 -9.47859 -8.24023 -6.40153 -0.54738 -0.49077 0.11105 0.18139 0.37742 1.39899 1.42603 1.46803 1.50390 1.53449 2.11539 2.36605 2.58524 2.99694 3.06276 3.27611 3.37875 3.70375 3.81069 4.01258 4.09187 4.16593 4.24520 4.33388 4.41099 4.41908 4.57404 4.73465 4.74931 4.82250 4.86538 4.99106 5.03126 5.10757 5.12697 5.19277 5.26231 5.35094 5.37010 5.65821 5.78163 5.81516 5.97235 6.51965 6.76436 7.09917 7.27221 7.35762 7.67460 8.81446 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.007000 B = 0.004392 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3998.920954 B = 6373.497177 C = 9580.352164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C 0.008 3.992 4 N -0.265 5.265 5 N -0.317 5.317 6 C 0.230 3.770 7 N -0.629 5.629 8 C 0.701 3.299 9 O -0.575 6.575 10 N -0.596 5.596 11 C 0.258 3.742 12 C -0.553 4.553 13 H 0.053 0.947 14 C 0.029 3.971 15 N -0.914 5.914 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.274 1.274 20 C 0.187 3.813 21 C 0.093 3.907 22 C -0.160 4.160 23 C -0.081 4.081 24 C -0.162 4.162 25 C 0.080 3.920 26 N -0.500 5.500 27 S 0.159 5.841 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.433 0.567 34 H 0.019 0.981 35 H 0.032 0.968 36 H 0.270 0.730 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.162 0.838 41 H 0.173 0.827 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 -7.527 5.608 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 C -0.275 4.275 4 N -0.100 5.100 5 N -0.161 5.161 6 C -0.141 4.141 7 N -0.284 5.284 8 C 0.400 3.600 9 O -0.451 6.451 10 N -0.330 5.330 11 C 0.137 3.863 12 C -0.592 4.592 13 H 0.072 0.928 14 C -0.173 4.173 15 N -0.552 5.552 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.199 1.199 20 C 0.063 3.937 21 C -0.045 4.045 22 C -0.181 4.181 23 C -0.107 4.107 24 C -0.181 4.181 25 C -0.077 4.077 26 N -0.210 5.210 27 S 0.399 5.601 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.275 0.725 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.147 0.853 40 H 0.180 0.820 41 H 0.190 0.810 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.176 -7.184 5.842 13.758 hybrid contribution 0.686 0.289 -0.318 0.810 sum -9.490 -6.895 5.523 12.965 Atomic orbital electron populations 1.21801 0.92376 1.04159 1.02111 1.20443 0.97380 0.83673 1.06444 1.30750 1.04269 1.04313 0.88162 1.71350 1.12884 0.98173 1.27635 1.71534 1.19930 1.08641 1.16027 1.25836 1.01040 0.93355 0.93849 1.42250 1.66159 1.08502 1.11506 1.15952 0.78656 0.80904 0.84481 1.90932 1.59590 1.79841 1.14742 1.47324 1.66607 1.10087 1.09004 1.19061 0.95853 0.97189 0.74207 1.21642 0.99054 1.43653 0.94828 0.92838 1.25600 1.00696 0.94379 0.96607 1.70011 1.36101 1.43987 1.05089 0.85587 0.79974 0.78436 0.77891 1.19608 1.20539 1.19931 1.20087 0.93137 0.87944 0.92574 1.21601 0.97583 0.93236 0.92058 1.22152 0.96800 1.00722 0.98406 1.21965 0.95291 0.93675 0.99769 1.22526 1.01608 0.98580 0.95432 1.23308 0.89973 0.98033 0.96395 1.67506 1.18444 1.05548 1.29485 1.84500 1.62260 1.03575 1.09785 0.93502 0.92231 0.88472 0.86403 0.87316 0.72508 0.96354 0.94985 0.92116 0.89066 0.88812 0.85255 0.82026 0.80989 0.80575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 71.98 0.71 -1.14 16 2 C -0.04 -0.56 6.56 29.85 0.20 -0.36 16 3 C 0.01 0.21 7.05 88.45 0.62 0.84 16 4 N -0.27 -9.39 11.65 -47.68 -0.56 -9.95 16 5 N -0.32 -13.23 9.73 -59.09 -0.58 -13.80 16 6 C 0.23 8.72 8.14 179.10 1.46 10.18 16 7 N -0.63 -25.68 5.27 -326.97 -1.72 -27.40 16 8 C 0.70 31.55 8.24 179.06 1.48 33.03 16 9 O -0.58 -27.84 14.55 -3.98 -0.06 -27.90 16 10 N -0.60 -26.36 2.44 -848.57 -2.07 -28.43 16 11 C 0.26 12.47 4.93 85.63 0.42 12.89 16 12 C -0.55 -28.56 9.39 25.60 0.24 -28.32 16 13 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 14 C 0.03 1.48 5.46 84.65 0.46 1.94 16 15 N -0.91 -49.20 13.29 21.45 0.28 -48.91 16 16 Si 0.96 41.27 29.54 68.60 2.03 43.29 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 C 0.19 7.48 5.71 85.63 0.49 7.96 16 21 C 0.09 3.45 6.36 42.55 0.27 3.72 16 22 C -0.16 -5.22 9.72 22.36 0.22 -5.00 16 23 C -0.08 -2.03 10.18 22.47 0.23 -1.80 16 24 C -0.16 -3.62 10.11 22.36 0.23 -3.40 16 25 C 0.08 2.24 11.18 84.67 0.95 3.19 16 26 N -0.50 -18.33 10.27 -183.88 -1.89 -20.21 16 27 S 0.16 4.22 23.31 -56.49 -1.32 2.90 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.43 17.09 6.55 -92.71 -0.61 16.48 16 34 H 0.02 0.91 6.36 -2.39 -0.02 0.90 16 35 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 36 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 37 H 0.09 3.71 8.07 -2.39 -0.02 3.69 16 38 H 0.09 3.62 7.32 -2.39 -0.02 3.61 16 39 H 0.13 4.40 8.01 -2.91 -0.02 4.37 16 40 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -71.86 379.70 2.55 -69.31 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.46 Total: 27.37 kcal Atomic # 6 Polarization: 25.76 SS G_CDS: 7.97 Total: 33.73 kcal Atomic # 7 Polarization: -142.19 SS G_CDS: -6.53 Total: -148.72 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.06 Total: -27.90 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.32 Total: 2.90 kcal Total: -71.86 2.55 -69.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134477458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.824 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds