Wall clock time and date at job start Wed Apr 1 2020 04:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38788 * 120.74039 * 2 1 4 4 C 1.38250 * 119.36196 * 180.02562 * 3 2 1 5 5 N 1.31765 * 120.89374 * 359.74374 * 4 3 2 6 6 C 1.32642 * 121.61445 * 0.52295 * 5 4 3 7 7 C 1.48365 * 119.72866 * 179.75460 * 6 5 4 8 8 N 1.31517 * 125.65260 * 179.72667 * 7 6 5 9 9 N 1.40439 * 106.69945 * 179.75043 * 8 7 6 10 10 H 0.97003 * 126.73632 * 180.27781 * 9 8 7 11 11 C 1.34555 * 106.51793 * 0.40566 * 9 8 7 12 12 C 1.50697 * 125.85535 * 179.86108 * 11 9 8 13 13 H 1.09007 * 109.46984 * 34.70577 * 12 11 9 14 14 C 1.53000 * 109.46811 * 274.71441 * 12 11 9 15 15 N 1.46499 * 109.47763 * 154.71303 * 12 11 9 16 16 C 1.34777 * 120.00199 * 205.00186 * 15 12 11 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 12 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 12 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00506 * 180.02562 * 22 20 19 24 24 Si 1.86809 * 119.99909 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47104 * 90.00095 * 24 22 20 26 26 H 1.48502 * 109.46943 * 210.00235 * 24 22 20 27 27 H 1.48497 * 109.46910 * 330.00035 * 24 22 20 28 28 N 1.30645 * 108.29531 * 359.58888 * 11 9 8 29 29 C 1.38400 * 120.74474 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47414 * 269.97892 * 1 2 3 31 31 H 1.09003 * 109.46951 * 29.98353 * 1 2 3 32 32 H 1.09003 * 109.46793 * 149.97783 * 1 2 3 33 33 H 1.07997 * 120.32234 * 359.97438 * 3 2 1 34 34 H 1.08011 * 119.55224 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47598 * 59.99720 * 14 12 11 36 36 H 1.09005 * 109.47473 * 179.97438 * 14 12 11 37 37 H 1.08998 * 109.46925 * 299.99315 * 14 12 11 38 38 H 0.97000 * 119.99484 * 24.99284 * 15 12 11 39 39 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 40 40 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 41 41 H 0.97002 * 120.00159 * 180.02562 * 23 22 20 42 42 H 1.07996 * 120.46819 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.1929 0.0000 4 6 3.5985 1.1596 -0.0005 5 7 4.2477 0.0130 0.0040 6 6 3.6073 -1.1486 -0.0011 7 6 4.3803 -2.4149 -0.0011 8 7 3.8676 -3.6261 -0.0008 9 7 4.9490 -4.5221 -0.0069 10 1 4.8998 -5.4908 -0.0119 11 6 6.0667 -3.7729 -0.0015 12 6 7.4800 -4.2959 -0.0020 13 1 7.5284 -5.2114 -0.5916 14 6 7.9149 -4.5912 1.4349 15 7 8.3724 -3.2913 -0.5856 16 6 9.5348 -3.6706 -1.1526 17 8 9.8423 -4.8435 -1.1791 18 6 10.4557 -2.6365 -1.7474 19 16 11.9256 -3.4522 -2.4183 20 6 12.8001 -2.0508 -3.0315 21 1 12.3789 -1.0621 -2.9244 22 6 14.0308 -2.2174 -3.6511 23 7 14.6844 -1.1705 -4.1088 24 14 14.7604 -3.9273 -3.8344 25 1 14.3122 -4.5217 -5.1193 26 1 16.2427 -3.8370 -3.8211 27 1 14.3065 -4.7824 -2.7084 28 7 5.7166 -2.5142 -0.0016 29 6 2.2145 -1.1895 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6939 2.1380 -0.0004 34 1 4.1537 2.0861 -0.0010 35 1 7.2510 -5.3386 1.8692 36 1 8.9370 -4.9700 1.4346 37 1 7.8666 -3.6757 2.0245 38 1 8.1265 -2.3532 -0.5641 39 1 9.9381 -2.1058 -2.5465 40 1 10.7540 -1.9282 -0.9746 41 1 15.5444 -1.2870 -4.5422 42 1 1.6945 -2.1360 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278976425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:03 Heat of formation + Delta-G solvation = 81.630994 kcal Electronic energy + Delta-G solvation = -26041.165742 eV Core-core repulsion = 22149.238181 eV Total energy + Delta-G solvation = -3891.927561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.60099 -40.47405 -39.43229 -35.77873 -34.52921 -33.44174 -32.41502 -32.20732 -31.53903 -30.01875 -28.61491 -28.24046 -25.59800 -24.99480 -24.52002 -23.03455 -21.37079 -20.97807 -20.03403 -18.64454 -17.72009 -16.92626 -16.68728 -16.45895 -16.18452 -16.09788 -16.02700 -15.10766 -14.94814 -14.65308 -14.46279 -14.09446 -13.97224 -13.55975 -13.36330 -13.19643 -13.14450 -13.04878 -12.77699 -12.75021 -12.31463 -12.10744 -12.02172 -11.67858 -11.24788 -10.99320 -10.89241 -10.59782 -10.47303 -10.20724 -9.90717 -9.84729 -9.83049 -9.60101 -9.21590 -9.12087 -8.97573 -8.48769 -6.89623 -6.26152 -3.97961 0.28063 0.84734 1.27395 1.99474 2.48495 2.76033 2.89844 3.18229 3.26892 3.34769 3.51422 3.55446 3.62083 3.83205 4.10170 4.27889 4.34911 4.46812 4.62806 4.64080 4.73680 4.81171 4.82671 4.92869 5.04361 5.08144 5.12736 5.22091 5.31902 5.41689 5.42709 5.52217 5.57876 5.73435 5.75838 5.80542 5.90209 5.95684 6.07569 6.25201 6.37187 6.57302 7.48639 7.58648 7.72088 7.96966 8.41137 8.45783 9.19764 10.83073 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.002040 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.099991 B =13722.216740 C =15099.584127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.046 4.046 3 C -0.164 4.164 4 C 0.108 3.892 5 N -0.447 5.447 6 C 0.206 3.794 7 C 0.276 3.724 8 N -0.291 5.291 9 N -0.469 5.469 10 H 0.445 0.555 11 C 0.283 3.717 12 C 0.227 3.773 13 H 0.113 0.887 14 C -0.161 4.161 15 N -0.722 5.722 16 C 0.537 3.463 17 O -0.521 6.521 18 C -0.123 4.123 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.089 0.911 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 N -0.497 5.497 29 C -0.137 4.137 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.415 0.585 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.270 0.730 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.091 -0.336 11.964 32.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.184 4.184 4 C -0.051 4.051 5 N -0.157 5.157 6 C 0.067 3.933 7 C -0.005 4.005 8 N -0.122 5.122 9 N -0.188 5.188 10 H 0.292 0.708 11 C 0.004 3.996 12 C 0.118 3.882 13 H 0.131 0.869 14 C -0.220 4.220 15 N -0.379 5.379 16 C 0.324 3.676 17 O -0.395 6.395 18 C -0.273 4.273 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.107 0.893 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 N -0.224 5.224 29 C -0.159 4.159 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.157 0.843 34 H 0.182 0.818 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.252 0.748 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -29.024 -2.048 11.822 31.406 hybrid contribution -0.799 0.585 -0.230 1.016 sum -29.823 -1.463 11.592 32.030 Atomic orbital electron populations 1.20838 0.89739 1.03614 1.03098 1.20278 0.97053 0.92510 0.95506 1.22231 0.95765 0.98841 1.01583 1.22836 0.91611 0.95850 0.94770 1.67566 1.40670 0.97337 1.10117 1.17970 0.88545 0.88216 0.98537 1.21711 0.88418 0.91005 0.99317 1.78177 1.08512 0.99196 1.26335 1.47918 1.03291 1.10509 1.57111 0.70791 1.24544 0.92094 0.87217 0.95786 1.19200 0.79194 0.92780 0.96985 0.86949 1.22226 1.03510 1.02664 0.93628 1.45900 1.20178 1.11018 1.60815 1.20335 0.80725 0.89986 0.76585 1.90695 1.73408 1.18589 1.56847 1.23266 0.99646 1.00614 1.03803 1.84723 1.16385 1.14801 1.75612 1.22324 1.07311 0.93412 1.43765 0.89277 1.24717 0.95606 0.97377 0.93653 1.69941 1.14837 1.29496 1.37388 0.86735 0.79185 0.84814 0.81094 1.19266 1.19978 1.15924 1.70457 1.12132 1.16878 1.22927 1.21914 0.93485 0.99558 1.00956 0.90315 0.90736 0.90814 0.84297 0.81820 0.91565 0.89696 0.91217 0.74782 0.88245 0.88072 0.91968 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.06 36.01 0.36 -0.09 16 2 C -0.05 -0.32 5.91 -104.36 -0.62 -0.93 16 3 C -0.16 -1.07 9.81 -39.37 -0.39 -1.46 16 4 C 0.11 0.92 11.17 -17.58 -0.20 0.73 16 5 N -0.45 -5.40 10.27 -9.77 -0.10 -5.50 16 6 C 0.21 2.43 6.75 -82.94 -0.56 1.87 16 7 C 0.28 3.54 7.86 -156.61 -1.23 2.31 16 8 N -0.29 -3.30 12.41 32.10 0.40 -2.90 16 9 N -0.47 -4.29 7.44 32.61 0.24 -4.04 16 10 H 0.45 2.40 8.96 -182.34 -1.63 0.76 16 11 C 0.28 3.11 7.20 -155.74 -1.12 1.99 16 12 C 0.23 2.47 3.12 -69.08 -0.22 2.26 16 13 H 0.11 1.18 7.58 -51.93 -0.39 0.79 16 14 C -0.16 -1.52 9.47 37.16 0.35 -1.17 16 15 N -0.72 -9.67 5.07 -54.93 -0.28 -9.95 16 16 C 0.54 9.30 7.81 -10.98 -0.09 9.21 16 17 O -0.52 -10.48 15.53 5.55 0.09 -10.39 16 18 C -0.12 -2.39 6.16 36.01 0.22 -2.16 16 19 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 20 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 21 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 24 Si 0.86 21.76 27.74 -169.99 -4.72 17.04 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 28 N -0.50 -6.60 10.40 -8.56 -0.09 -6.68 16 29 C -0.14 -1.23 9.42 -39.11 -0.37 -1.60 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.21 8.10 -51.93 -0.42 -0.21 16 32 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 33 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 34 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.42 5.33 8.00 -40.82 -0.33 5.00 16 39 H 0.10 1.84 8.14 -51.91 -0.42 1.42 16 40 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.14 1.11 7.82 -52.49 -0.41 0.70 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -36.75 382.49 -10.11 -46.86 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.57 Total: 2.33 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.63 Total: -1.08 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.95 Total: -54.97 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.75 -10.11 -46.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278976425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.487 kcal (2) G-P(sol) polarization free energy of solvation -36.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds