Wall clock time and date at job start Wed Apr 1 2020 04:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47330 * 2 1 4 4 C 1.50704 * 109.47098 * 240.00017 * 2 1 3 5 5 H 1.07995 * 119.99917 * 240.82950 * 4 2 1 6 6 C 1.37875 * 119.99619 * 60.83548 * 4 2 1 7 7 N 1.31521 * 119.99809 * 194.57702 * 6 4 2 8 8 Si 1.86803 * 120.00415 * 14.57713 * 6 4 2 9 9 H 1.48508 * 109.46988 * 84.45334 * 8 6 4 10 10 H 1.48495 * 109.47402 * 204.45567 * 8 6 4 11 11 H 1.48500 * 109.47107 * 324.45782 * 8 6 4 12 12 C 1.53002 * 109.47318 * 120.00042 * 2 1 3 13 13 S 1.81393 * 109.47228 * 300.00104 * 12 2 1 14 14 O 1.42099 * 110.54511 * 68.37204 * 13 12 2 15 15 O 1.42107 * 110.54331 * 291.62284 * 13 12 2 16 16 N 1.65600 * 104.44876 * 180.02562 * 13 12 2 17 17 C 1.46493 * 120.00247 * 64.99845 * 16 13 12 18 18 C 1.52997 * 109.47158 * 164.99800 * 17 16 13 19 19 C 1.50706 * 109.47352 * 179.97438 * 18 17 16 20 20 C 1.38253 * 120.00560 * 264.97942 * 19 18 17 21 21 C 1.38210 * 120.07138 * 180.02562 * 20 19 18 22 22 C 1.38248 * 120.07373 * 0.02562 * 21 20 19 23 23 C 1.38374 * 119.99698 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.03340 * 179.97438 * 23 22 21 25 25 C 1.38373 * 119.99554 * 85.00077 * 19 18 17 26 26 F 1.35107 * 120.03646 * 0.26068 * 25 19 18 27 27 H 1.09001 * 109.46971 * 310.23103 * 1 2 3 28 28 H 1.08992 * 109.47773 * 70.23204 * 1 2 3 29 29 H 1.09005 * 109.47146 * 190.23157 * 1 2 3 30 30 H 1.08996 * 109.47409 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46925 * 300.00584 * 3 2 1 32 32 H 1.09000 * 109.46874 * 59.99843 * 3 2 1 33 33 H 0.97000 * 119.99700 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47161 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47024 * 60.00149 * 12 2 1 36 36 H 0.96999 * 119.99704 * 244.99786 * 16 13 12 37 37 H 1.08998 * 109.47085 * 45.00016 * 17 16 13 38 38 H 1.08997 * 109.47098 * 284.99810 * 17 16 13 39 39 H 1.09008 * 109.46949 * 60.00255 * 18 17 16 40 40 H 1.09000 * 109.47762 * 300.00380 * 18 17 16 41 41 H 1.07997 * 119.96209 * 0.02664 * 20 19 18 42 42 H 1.08006 * 119.96102 * 179.97438 * 21 20 19 43 43 H 1.08004 * 120.00404 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6421 -1.5962 -1.1315 6 6 1.7134 -0.2293 -2.4826 7 7 1.8968 -0.9847 -3.5436 8 14 1.0210 1.4952 -2.6723 9 1 2.1369 2.4738 -2.7240 10 1 0.2325 1.5768 -3.9280 11 1 0.1433 1.8062 -1.5155 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0543 -0.7401 3.9935 17 6 3.5027 -0.7964 4.2053 18 6 3.7925 -1.3322 5.6087 19 6 5.2826 -1.3907 5.8264 20 6 5.9696 -2.5678 5.5941 21 6 7.3361 -2.6231 5.7937 22 6 8.0189 -1.5017 6.2267 23 6 7.3343 -0.3221 6.4601 24 9 8.0008 0.7741 6.8837 25 6 5.9632 -0.2664 6.2592 26 9 5.2918 0.8827 6.4919 27 1 -0.3633 0.6637 0.7846 28 1 -0.3634 0.3475 -0.9670 29 1 -0.3634 -1.0114 0.1825 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6721 -0.6463 -4.4245 34 1 3.1301 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 1.4576 -1.2147 4.5932 37 1 3.9238 0.2039 4.1042 38 1 3.9528 -1.4568 3.4641 39 1 3.3714 -2.3326 5.7098 40 1 3.3424 -0.6720 6.3500 41 1 5.4378 -3.4450 5.2562 42 1 7.8709 -3.5437 5.6121 43 1 9.0868 -1.5461 6.3819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296556256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:14 Heat of formation + Delta-G solvation = -126.641080 kcal Electronic energy + Delta-G solvation = -28694.235677 eV Core-core repulsion = 24310.294823 eV Total energy + Delta-G solvation = -4383.940854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.74487 -48.82254 -39.55028 -36.77912 -36.74351 -36.15242 -35.47349 -32.72435 -31.95998 -30.70118 -28.48860 -27.43199 -26.38772 -25.03568 -24.08440 -23.21972 -21.89378 -19.95487 -18.91966 -18.20377 -17.65532 -17.53890 -17.10278 -16.73753 -16.28953 -16.13074 -15.62452 -15.32710 -15.23317 -15.16941 -14.95655 -14.65252 -14.48944 -13.95573 -13.44510 -13.31387 -13.16074 -12.98124 -12.87585 -12.53339 -12.46708 -12.38756 -12.11060 -11.79022 -11.74444 -11.60155 -11.54257 -11.32806 -11.10183 -11.01346 -10.77594 -10.18329 -10.06905 -10.04602 -9.50847 -9.31613 -9.12013 -9.01813 -8.75562 -8.48494 -6.20885 -4.18280 0.50047 0.53618 0.69941 2.89718 3.02934 3.24970 3.34396 3.38386 3.40081 3.99162 4.08014 4.13494 4.26471 4.33181 4.48607 4.58022 4.64133 4.68248 4.82590 5.08610 5.11632 5.26387 5.30171 5.38508 5.46283 5.48324 5.55734 5.57228 5.73891 5.84562 5.88153 5.97855 6.19158 6.31222 6.34042 6.42793 6.47926 6.69254 6.85989 6.97498 7.12234 7.30128 7.61095 8.37052 8.81528 9.43266 10.91589 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.002790 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.163116 B =10034.380121 C =10511.647105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.054 3.946 3 C -0.182 4.182 4 C -0.508 4.508 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.281 1.281 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.574 4.574 13 S 2.590 3.410 14 O -0.962 6.962 15 O -0.962 6.962 16 N -1.128 6.128 17 C 0.118 3.882 18 C -0.088 4.088 19 C -0.089 4.089 20 C -0.095 4.095 21 C -0.098 4.098 22 C -0.129 4.129 23 C 0.068 3.932 24 F -0.129 7.129 25 C 0.072 3.928 26 F -0.122 7.122 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.266 0.734 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.413 0.587 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.591 -5.297 21.286 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.051 3.949 3 C -0.239 4.239 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.705 3.295 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.707 4.707 13 S 2.687 3.313 14 O -0.953 6.953 15 O -0.952 6.952 16 N -0.885 5.885 17 C -0.008 4.008 18 C -0.126 4.126 19 C -0.091 4.091 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.148 4.148 23 C 0.048 3.952 24 F -0.107 7.107 25 C 0.052 3.948 26 F -0.101 7.101 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.158 -4.344 21.112 23.420 hybrid contribution -0.002 0.604 -0.199 0.636 sum 9.157 -3.741 20.914 23.135 Atomic orbital electron populations 1.22680 0.97000 1.01347 1.01787 1.18234 0.92531 0.91726 0.92372 1.22822 1.02371 0.97856 1.00821 1.20644 1.33945 1.12570 0.87520 0.90398 1.24964 0.94542 0.97295 0.95794 1.69936 1.47891 1.35779 0.98908 0.87443 0.79830 0.85673 0.76525 1.20790 1.22913 1.17172 1.30371 1.11777 1.13078 1.15507 1.05690 0.74463 0.75309 0.75815 1.93572 1.29286 1.86636 1.85787 1.93555 1.78097 1.38100 1.85452 1.55761 1.13869 1.71307 1.47601 1.21248 0.80578 1.02515 0.96480 1.20758 0.90217 1.03856 0.97812 1.19755 0.96715 0.92229 1.00381 1.21113 0.94281 0.97230 0.98687 1.21110 0.94188 0.98340 0.97974 1.21135 1.01351 0.91097 1.01207 1.17715 0.88742 0.85121 1.03622 1.91544 1.80062 1.51640 1.87458 1.17597 0.88725 0.83763 1.04740 1.91565 1.79796 1.46663 1.92037 0.94429 0.91429 0.92314 0.91783 0.93006 0.93157 0.92409 0.85770 0.85376 0.75356 0.89954 0.91055 0.88931 0.89321 0.83866 0.84012 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 6.95 37.15 0.26 -3.56 16 2 C 0.05 1.23 0.52 -155.66 -0.08 1.15 16 3 C -0.18 -4.08 7.22 37.16 0.27 -3.81 16 4 C -0.51 -13.51 8.62 -34.44 -0.30 -13.81 16 5 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 6 C 0.08 2.15 5.31 -17.82 -0.09 2.06 16 7 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 8 Si 0.87 21.49 22.79 -169.99 -3.87 17.61 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.25 -5.67 4.67 56.52 0.26 -5.41 16 12 C -0.57 -10.20 4.99 37.16 0.19 -10.01 16 13 S 2.59 43.53 4.50 -107.50 -0.48 43.04 16 14 O -0.96 -18.40 15.93 -57.54 -0.92 -19.31 16 15 O -0.96 -18.75 15.12 -57.54 -0.87 -19.62 16 16 N -1.13 -13.31 5.88 -10.62 -0.06 -13.38 16 17 C 0.12 1.23 6.11 -4.05 -0.02 1.20 16 18 C -0.09 -0.69 5.26 -27.88 -0.15 -0.84 16 19 C -0.09 -0.73 5.14 -104.56 -0.54 -1.27 16 20 C -0.09 -0.57 9.68 -39.59 -0.38 -0.96 16 21 C -0.10 -0.53 10.04 -39.59 -0.40 -0.93 16 22 C -0.13 -0.87 10.02 -39.53 -0.40 -1.27 16 23 C 0.07 0.65 7.31 -39.37 -0.29 0.37 16 24 F -0.13 -1.42 17.18 2.25 0.04 -1.38 16 25 C 0.07 0.74 7.25 -39.37 -0.29 0.46 16 26 F -0.12 -1.51 16.48 2.25 0.04 -1.48 16 27 H 0.04 0.79 6.21 -51.93 -0.32 0.47 16 28 H 0.07 1.56 4.32 -51.93 -0.22 1.34 16 29 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.05 1.20 2.28 -51.93 -0.12 1.08 16 32 H 0.05 1.06 5.46 -51.93 -0.28 0.78 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.12 1.97 8.14 -51.92 -0.42 1.54 16 35 H 0.13 2.05 8.14 -51.93 -0.42 1.62 16 36 H 0.41 3.87 8.62 -34.47 -0.30 3.57 16 37 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.50 8.05 -51.92 -0.42 0.08 16 40 H 0.09 0.73 7.79 -51.93 -0.40 0.33 16 41 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 43 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -34.45 356.70 -7.74 -42.19 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.54 Total: 3.64 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: -2.22 Total: -31.21 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.71 Total: -38.86 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.79 Total: -38.93 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -3.87 Total: 17.61 kcal Atomic # 16 Polarization: 43.53 SS G_CDS: -0.48 Total: 43.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.45 -7.74 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296556256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.451 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds