Wall clock time and date at job start Wed Apr 1 2020 04:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47330 * 2 1 4 4 C 1.50704 * 109.47098 * 240.00017 * 2 1 3 5 5 H 1.07995 * 119.99917 * 240.82950 * 4 2 1 6 6 C 1.37875 * 119.99619 * 60.83548 * 4 2 1 7 7 N 1.31521 * 119.99809 * 194.57702 * 6 4 2 8 8 Si 1.86803 * 120.00415 * 14.57713 * 6 4 2 9 9 H 1.48508 * 109.46988 * 84.45334 * 8 6 4 10 10 H 1.48495 * 109.47402 * 204.45567 * 8 6 4 11 11 H 1.48500 * 109.47107 * 324.45782 * 8 6 4 12 12 C 1.53002 * 109.47318 * 120.00042 * 2 1 3 13 13 S 1.81393 * 109.47228 * 300.00104 * 12 2 1 14 14 O 1.42099 * 110.54511 * 68.37204 * 13 12 2 15 15 O 1.42107 * 110.54331 * 291.62284 * 13 12 2 16 16 N 1.65600 * 104.44876 * 180.02562 * 13 12 2 17 17 C 1.46493 * 120.00247 * 64.99845 * 16 13 12 18 18 C 1.52997 * 109.47158 * 164.99800 * 17 16 13 19 19 C 1.50706 * 109.47352 * 179.97438 * 18 17 16 20 20 C 1.38253 * 120.00560 * 264.97942 * 19 18 17 21 21 C 1.38210 * 120.07138 * 180.02562 * 20 19 18 22 22 C 1.38248 * 120.07373 * 0.02562 * 21 20 19 23 23 C 1.38374 * 119.99698 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.03340 * 179.97438 * 23 22 21 25 25 C 1.38373 * 119.99554 * 85.00077 * 19 18 17 26 26 F 1.35107 * 120.03646 * 0.26068 * 25 19 18 27 27 H 1.09001 * 109.46971 * 310.23103 * 1 2 3 28 28 H 1.08992 * 109.47773 * 70.23204 * 1 2 3 29 29 H 1.09005 * 109.47146 * 190.23157 * 1 2 3 30 30 H 1.08996 * 109.47409 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46925 * 300.00584 * 3 2 1 32 32 H 1.09000 * 109.46874 * 59.99843 * 3 2 1 33 33 H 0.97000 * 119.99700 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47161 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47024 * 60.00149 * 12 2 1 36 36 H 0.96999 * 119.99704 * 244.99786 * 16 13 12 37 37 H 1.08998 * 109.47085 * 45.00016 * 17 16 13 38 38 H 1.08997 * 109.47098 * 284.99810 * 17 16 13 39 39 H 1.09008 * 109.46949 * 60.00255 * 18 17 16 40 40 H 1.09000 * 109.47762 * 300.00380 * 18 17 16 41 41 H 1.07997 * 119.96209 * 0.02664 * 20 19 18 42 42 H 1.08006 * 119.96102 * 179.97438 * 21 20 19 43 43 H 1.08004 * 120.00404 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6421 -1.5962 -1.1315 6 6 1.7134 -0.2293 -2.4826 7 7 1.8968 -0.9847 -3.5436 8 14 1.0210 1.4952 -2.6723 9 1 2.1369 2.4738 -2.7240 10 1 0.2325 1.5768 -3.9280 11 1 0.1433 1.8062 -1.5155 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0543 -0.7401 3.9935 17 6 3.5027 -0.7964 4.2053 18 6 3.7925 -1.3322 5.6087 19 6 5.2826 -1.3907 5.8264 20 6 5.9696 -2.5678 5.5941 21 6 7.3361 -2.6231 5.7937 22 6 8.0189 -1.5017 6.2267 23 6 7.3343 -0.3221 6.4601 24 9 8.0008 0.7741 6.8837 25 6 5.9632 -0.2664 6.2592 26 9 5.2918 0.8827 6.4919 27 1 -0.3633 0.6637 0.7846 28 1 -0.3634 0.3475 -0.9670 29 1 -0.3634 -1.0114 0.1825 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6721 -0.6463 -4.4245 34 1 3.1301 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 1.4576 -1.2147 4.5932 37 1 3.9238 0.2039 4.1042 38 1 3.9528 -1.4568 3.4641 39 1 3.3714 -2.3326 5.7098 40 1 3.3424 -0.6720 6.3500 41 1 5.4378 -3.4450 5.2562 42 1 7.8709 -3.5437 5.6121 43 1 9.0868 -1.5461 6.3819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296556256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:13 Heat of formation + Delta-G solvation = -151.143429 kcal Electronic energy + Delta-G solvation = -28695.298178 eV Core-core repulsion = 24310.294823 eV Total energy + Delta-G solvation = -4385.003355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.50214 -49.59615 -40.09883 -38.49874 -38.16941 -37.08074 -36.86303 -34.03856 -33.42569 -31.25228 -29.22915 -28.91934 -28.14844 -27.08108 -24.80974 -23.79420 -22.53724 -21.62846 -20.27221 -19.02150 -18.72672 -18.29563 -18.12223 -17.80891 -17.66303 -17.27565 -17.06169 -16.89498 -16.09353 -15.93239 -15.73788 -15.59744 -15.34689 -15.06671 -15.00884 -14.78521 -14.62358 -14.17914 -14.08800 -13.96500 -13.64768 -13.24917 -13.15835 -13.07906 -12.96423 -12.73185 -12.67997 -12.61684 -12.55308 -12.35219 -12.06697 -12.00390 -11.85358 -11.77031 -10.98368 -10.68401 -10.56190 -10.33072 -9.87793 -9.72909 -8.34756 -6.33531 -0.67640 -0.04564 -0.00137 1.29711 1.35667 1.42491 1.82523 2.29497 2.41482 2.78785 2.81675 2.99920 3.27031 3.34587 3.52992 3.74151 3.77877 3.91048 3.98682 4.07746 4.16192 4.24844 4.26242 4.47451 4.49333 4.57416 4.60904 4.68518 4.70117 4.80023 4.89058 4.95406 4.98610 5.03773 5.12664 5.16275 5.25068 5.34452 5.38663 5.53052 5.63434 5.80699 6.13926 6.26867 6.69513 7.30872 8.80859 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.002790 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.163116 B =10034.380121 C =10511.647105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.044 3.956 3 C -0.188 4.188 4 C -0.501 4.501 5 H 0.054 0.946 6 C 0.028 3.972 7 N -0.934 5.934 8 Si 0.914 3.086 9 H -0.278 1.278 10 H -0.306 1.306 11 H -0.223 1.223 12 C -0.581 4.581 13 S 2.612 3.388 14 O -0.986 6.986 15 O -0.990 6.990 16 N -1.110 6.110 17 C 0.108 3.892 18 C -0.083 4.083 19 C -0.095 4.095 20 C -0.087 4.087 21 C -0.088 4.088 22 C -0.126 4.126 23 C 0.039 3.961 24 F -0.146 7.146 25 C 0.039 3.961 26 F -0.145 7.145 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.266 0.734 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.428 0.572 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.176 0.824 42 H 0.178 0.822 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.969 -7.010 22.888 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 C -0.245 4.245 4 C -0.540 4.540 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.573 5.573 8 Si 0.744 3.256 9 H -0.205 1.205 10 H -0.235 1.235 11 H -0.147 1.147 12 C -0.713 4.713 13 S 2.708 3.292 14 O -0.976 6.976 15 O -0.980 6.980 16 N -0.872 5.872 17 C -0.018 4.018 18 C -0.121 4.121 19 C -0.097 4.097 20 C -0.104 4.104 21 C -0.105 4.105 22 C -0.144 4.144 23 C 0.019 3.981 24 F -0.125 7.125 25 C 0.019 3.981 26 F -0.124 7.124 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.264 0.736 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.098 0.902 41 H 0.193 0.807 42 H 0.195 0.805 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.524 -6.054 22.734 25.381 hybrid contribution -0.016 0.998 -0.614 1.172 sum 9.509 -5.056 22.120 24.602 Atomic orbital electron populations 1.22698 0.96811 1.02283 1.01540 1.18220 0.92785 0.91981 0.92871 1.22860 1.02931 0.97725 1.00948 1.20930 1.32347 1.11626 0.89079 0.92785 1.25630 0.95435 1.00241 0.95813 1.70046 1.50348 1.37494 0.99435 0.86765 0.79805 0.82112 0.76959 1.20483 1.23475 1.14725 1.30366 1.13075 1.13707 1.14138 1.04740 0.73600 0.74874 0.75942 1.93536 1.30895 1.86943 1.86197 1.93523 1.78502 1.40093 1.85898 1.55255 1.14965 1.70870 1.46072 1.21490 0.79186 1.02174 0.98951 1.20751 0.90301 1.05359 0.95737 1.19882 0.96841 0.92317 1.00668 1.21551 0.94707 0.97162 0.97018 1.21579 0.94158 0.98912 0.95893 1.21484 1.02442 0.90338 1.00150 1.18124 0.88892 0.85780 1.05307 1.91487 1.80341 1.52758 1.87936 1.18047 0.89321 0.83946 1.06828 1.91492 1.80292 1.48098 1.92535 0.93228 0.92596 0.91387 0.91166 0.93909 0.91903 0.92510 0.84029 0.83562 0.73554 0.92180 0.88768 0.85560 0.90238 0.80656 0.80461 0.81679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.57 6.95 71.98 0.50 -7.07 16 2 C 0.04 1.92 0.52 -52.93 -0.03 1.89 16 3 C -0.19 -8.12 7.22 71.98 0.52 -7.60 16 4 C -0.50 -26.49 8.62 25.60 0.22 -26.27 16 5 H 0.05 3.05 7.99 -2.91 -0.02 3.02 16 6 C 0.03 1.55 5.31 84.65 0.45 2.00 16 7 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 8 Si 0.91 43.92 22.79 68.60 1.56 45.49 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 10 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 11 H -0.22 -9.81 4.67 99.48 0.46 -9.35 16 12 C -0.58 -19.34 4.99 71.98 0.36 -18.98 16 13 S 2.61 82.32 4.50 -56.49 -0.25 82.06 16 14 O -0.99 -35.57 15.93 -127.65 -2.03 -37.60 16 15 O -0.99 -37.23 15.12 -127.65 -1.93 -39.16 16 16 N -1.11 -23.24 5.88 -187.51 -1.10 -24.34 16 17 C 0.11 1.98 6.11 86.38 0.53 2.51 16 18 C -0.08 -1.09 5.26 29.85 0.16 -0.93 16 19 C -0.10 -1.36 5.14 -19.83 -0.10 -1.47 16 20 C -0.09 -0.70 9.68 22.27 0.22 -0.48 16 21 C -0.09 -0.60 10.04 22.27 0.22 -0.37 16 22 C -0.13 -1.42 10.02 22.30 0.22 -1.20 16 23 C 0.04 0.74 7.31 22.41 0.16 0.91 16 24 F -0.15 -3.39 17.18 44.97 0.77 -2.62 16 25 C 0.04 0.79 7.25 22.41 0.16 0.96 16 26 F -0.15 -3.80 16.48 44.97 0.74 -3.06 16 27 H 0.05 1.99 6.21 -2.39 -0.01 1.98 16 28 H 0.06 2.50 4.32 -2.39 -0.01 2.49 16 29 H 0.07 2.74 8.11 -2.38 -0.02 2.72 16 30 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.04 1.91 2.28 -2.39 -0.01 1.90 16 32 H 0.06 2.55 5.46 -2.39 -0.01 2.53 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 35 H 0.15 4.28 8.14 -2.39 -0.02 4.26 16 36 H 0.43 6.66 8.62 -96.75 -0.83 5.83 16 37 H 0.06 1.40 7.69 -2.39 -0.02 1.38 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.13 0.79 8.05 -2.38 -0.02 0.77 16 40 H 0.08 1.20 7.79 -2.39 -0.02 1.18 16 41 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 42 H 0.18 -0.01 8.06 -2.91 -0.02 -0.04 16 43 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -76.66 356.70 1.63 -75.03 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.02 Total: 16.18 kcal Atomic # 6 Polarization: -59.71 SS G_CDS: 3.59 Total: -56.12 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -0.80 Total: -80.19 kcal Atomic # 8 Polarization: -72.80 SS G_CDS: -3.96 Total: -76.77 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 1.51 Total: -5.68 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.56 Total: 45.49 kcal Atomic # 16 Polarization: 82.32 SS G_CDS: -0.25 Total: 82.06 kcal Total: -76.66 1.63 -75.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296556256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.117 kcal (2) G-P(sol) polarization free energy of solvation -76.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds