Wall clock time and date at job start Wed Apr 1 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47288 * 2 1 4 4 C 1.50702 * 109.47409 * 239.99363 * 2 1 3 5 5 H 1.07993 * 120.00514 * 240.00610 * 4 2 1 6 6 C 1.37877 * 119.99654 * 60.00173 * 4 2 1 7 7 N 1.31517 * 119.99929 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00312 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46573 * 60.00425 * 8 6 4 10 10 H 1.48497 * 109.47389 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47038 * 300.00680 * 8 6 4 12 12 C 1.53008 * 109.47024 * 119.99948 * 2 1 3 13 13 S 1.81395 * 109.46822 * 300.00068 * 12 2 1 14 14 O 1.42099 * 110.54561 * 68.37614 * 13 12 2 15 15 O 1.42101 * 110.54323 * 291.62326 * 13 12 2 16 16 N 1.65601 * 104.44786 * 179.97438 * 13 12 2 17 17 C 1.46499 * 120.00360 * 64.99792 * 16 13 12 18 18 C 1.52994 * 109.47394 * 164.99676 * 17 16 13 19 19 C 1.50701 * 109.47170 * 179.97438 * 18 17 16 20 20 C 1.38425 * 120.02136 * 90.00332 * 19 18 17 21 21 F 1.35101 * 120.01402 * 359.70506 * 20 19 18 22 22 C 1.38476 * 119.97328 * 179.97438 * 20 19 18 23 23 C 1.38207 * 120.02410 * 0.02562 * 22 20 19 24 24 C 1.38207 * 120.05360 * 359.97438 * 23 22 20 25 25 C 1.38412 * 120.02814 * 269.97965 * 19 18 17 26 26 F 1.35096 * 120.01191 * 0.02562 * 25 19 18 27 27 H 1.08994 * 109.47203 * 300.00417 * 1 2 3 28 28 H 1.09000 * 109.46591 * 60.00508 * 1 2 3 29 29 H 1.09005 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47438 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47433 * 299.99803 * 3 2 1 32 32 H 1.08994 * 109.47338 * 59.99666 * 3 2 1 33 33 H 0.97008 * 120.00372 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47276 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47046 * 59.99857 * 12 2 1 36 36 H 0.97005 * 119.99889 * 244.99958 * 16 13 12 37 37 H 1.09008 * 109.46641 * 45.00118 * 17 16 13 38 38 H 1.08994 * 109.47113 * 285.00859 * 17 16 13 39 39 H 1.09008 * 109.46866 * 60.00579 * 18 17 16 40 40 H 1.09006 * 109.47655 * 300.00440 * 18 17 16 41 41 H 1.08001 * 119.98752 * 179.97438 * 22 20 19 42 42 H 1.08000 * 119.97200 * 180.02562 * 23 22 20 43 43 H 1.07995 * 119.99247 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8281 -0.4195 -5.2204 11 1 3.8076 -1.1193 -4.0076 12 6 2.0400 -0.7213 1.2493 13 16 1.4353 0.1339 2.7303 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4100 2.8543 16 7 2.0529 -0.7408 3.9936 17 6 3.5012 -0.7982 4.2061 18 6 3.7900 -1.3346 5.6095 19 6 5.2799 -1.3943 5.8278 20 6 5.9463 -0.3035 6.3593 21 9 5.2621 0.8173 6.6770 22 6 7.3153 -0.3596 6.5599 23 6 8.0163 -1.5039 6.2292 24 6 7.3521 -2.5935 5.6986 25 6 5.9830 -2.5398 5.4975 26 9 5.3339 -3.6050 4.9787 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7096 1.1617 -3.4845 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7490 1.2493 36 1 1.4556 -1.2151 4.5930 37 1 3.9231 0.2018 4.1054 38 1 3.9512 -1.4586 3.4649 39 1 3.3681 -2.3346 5.7102 40 1 3.3400 -0.6741 6.3507 41 1 7.8354 0.4914 6.9742 42 1 9.0839 -1.5469 6.3865 43 1 7.9009 -3.4870 5.4401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296798738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:16 Heat of formation + Delta-G solvation = -166.340262 kcal Electronic energy + Delta-G solvation = -28818.720391 eV Core-core repulsion = 24433.058052 eV Total energy + Delta-G solvation = -4385.662339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.01786 -50.00187 -39.91454 -38.17297 -38.13567 -37.17332 -36.87310 -33.65281 -33.53001 -31.23857 -29.17548 -28.31428 -27.69887 -27.25310 -24.81210 -23.84633 -22.50807 -21.38562 -20.31218 -19.13858 -18.78347 -18.37906 -17.88960 -17.62626 -16.97467 -16.88926 -16.79537 -16.57004 -16.56421 -16.29726 -15.88648 -15.60305 -15.39270 -15.00353 -14.69875 -14.57320 -14.43173 -13.85958 -13.72170 -13.68650 -13.37430 -13.14446 -13.05704 -12.95314 -12.86633 -12.80287 -12.65002 -12.51561 -12.40990 -12.21702 -12.17583 -12.12800 -11.96760 -11.57456 -11.38475 -10.73492 -10.41596 -10.39233 -9.87749 -9.73370 -8.03174 -6.22114 -0.65230 -0.02272 -0.00879 1.45553 1.45632 1.53180 1.84195 2.39073 2.44206 2.81676 2.89749 3.18726 3.27818 3.43236 3.47212 3.64779 3.81161 3.92009 4.01740 4.12812 4.15775 4.25071 4.40129 4.50880 4.59234 4.70220 4.84048 4.85858 4.87993 4.90833 4.97593 4.99524 5.07976 5.10808 5.11151 5.23924 5.37558 5.50100 5.63952 5.80128 5.96661 6.06574 6.11036 6.33514 6.82324 7.46168 8.96587 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.003006 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.534360 B = 9312.469671 C =10301.293182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.159 4.159 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.271 1.271 12 C -0.586 4.586 13 S 2.614 3.386 14 O -0.990 6.990 15 O -0.991 6.991 16 N -1.113 6.113 17 C 0.114 3.886 18 C -0.083 4.083 19 C -0.169 4.169 20 C 0.110 3.890 21 F -0.141 7.141 22 C -0.160 4.160 23 C -0.052 4.052 24 C -0.159 4.159 25 C 0.116 3.884 26 F -0.136 7.136 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.425 0.575 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.163 0.837 42 H 0.181 0.819 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.267 -7.919 20.205 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.196 1.196 12 C -0.718 4.718 13 S 2.711 3.289 14 O -0.980 6.980 15 O -0.980 6.980 16 N -0.874 5.874 17 C -0.012 4.012 18 C -0.121 4.121 19 C -0.172 4.172 20 C 0.091 3.909 21 F -0.119 7.119 22 C -0.179 4.179 23 C -0.070 4.070 24 C -0.177 4.177 25 C 0.097 3.903 26 F -0.115 7.115 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.261 0.739 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.181 0.819 42 H 0.198 0.802 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 14.693 -6.912 20.056 25.805 hybrid contribution -0.322 -0.793 -1.124 1.413 sum 14.371 -7.705 18.932 24.986 Atomic orbital electron populations 1.22217 0.97731 1.00545 1.01375 1.17923 0.92367 0.92152 0.90832 1.22202 0.99790 0.98366 1.01365 1.21266 1.31790 1.12358 0.90406 0.91866 1.25689 0.95150 0.95651 1.01698 1.69941 1.37139 1.23654 1.23934 0.85657 0.78762 0.78711 0.78759 1.19702 1.21290 1.19649 1.30457 1.12481 1.13487 1.15420 1.04725 0.73506 0.74849 0.75823 1.93511 1.31242 1.87032 1.86235 1.93505 1.78470 1.40102 1.85968 1.55340 1.14769 1.70841 1.46446 1.21388 0.79400 1.02074 0.98312 1.20590 0.90793 1.04363 0.96385 1.19773 0.97182 0.94099 1.06128 1.17580 0.90993 0.82354 1.00018 1.91520 1.80247 1.49687 1.90453 1.21587 0.91183 1.01840 1.03259 1.21316 1.02114 0.89944 0.93636 1.21598 0.91514 1.02425 1.02204 1.17462 0.91228 0.83426 0.98219 1.91519 1.81875 1.53924 1.84136 0.94903 0.90975 0.94055 0.94147 0.91005 0.94902 0.92899 0.84673 0.84320 0.73868 0.91187 0.90281 0.87988 0.89137 0.81913 0.80178 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.10 7.78 71.98 0.56 -7.54 16 2 C 0.07 3.38 0.52 -52.93 -0.03 3.36 16 3 C -0.16 -8.02 7.77 71.98 0.56 -7.46 16 4 C -0.52 -27.21 8.01 25.60 0.21 -27.01 16 5 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 6 C 0.02 0.94 5.15 84.65 0.44 1.37 16 7 N -0.91 -50.66 9.35 21.45 0.20 -50.46 16 8 Si 0.96 42.24 29.54 68.60 2.03 44.27 16 9 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 C -0.59 -22.45 5.01 71.98 0.36 -22.09 16 13 S 2.61 96.59 4.49 -56.49 -0.25 96.33 16 14 O -0.99 -41.57 15.70 -127.65 -2.00 -43.58 16 15 O -0.99 -42.25 15.12 -127.65 -1.93 -44.18 16 16 N -1.11 -29.46 5.89 -187.50 -1.10 -30.56 16 17 C 0.11 2.72 6.11 86.38 0.53 3.25 16 18 C -0.08 -1.59 5.13 29.85 0.15 -1.44 16 19 C -0.17 -3.13 5.15 -19.78 -0.10 -3.24 16 20 C 0.11 1.99 7.24 22.37 0.16 2.15 16 21 F -0.14 -3.10 16.48 44.97 0.74 -2.36 16 22 C -0.16 -1.88 10.03 22.32 0.22 -1.66 16 23 C -0.05 -0.42 10.04 22.25 0.22 -0.19 16 24 C -0.16 -1.73 10.03 22.32 0.22 -1.50 16 25 C 0.12 1.93 7.24 22.37 0.16 2.09 16 26 F -0.14 -2.58 16.48 44.97 0.74 -1.84 16 27 H 0.03 1.58 5.46 -2.39 -0.01 1.56 16 28 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.07 3.94 6.07 -2.38 -0.01 3.92 16 32 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 33 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 34 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 35 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 36 H 0.43 9.12 8.62 -96.74 -0.83 8.29 16 37 H 0.07 1.86 7.70 -2.38 -0.02 1.84 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.67 7.64 -2.38 -0.02 1.65 16 40 H 0.09 1.72 7.65 -2.38 -0.02 1.70 16 41 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 43 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -70.52 365.17 2.30 -68.22 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.22 Total: 24.06 kcal Atomic # 6 Polarization: -63.57 SS G_CDS: 3.67 Total: -59.91 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -0.90 Total: -81.02 kcal Atomic # 8 Polarization: -83.83 SS G_CDS: -3.93 Total: -87.76 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 1.48 Total: -4.19 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 96.59 SS G_CDS: -0.25 Total: 96.33 kcal Total: -70.52 2.30 -68.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296798738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.122 kcal (2) G-P(sol) polarization free energy of solvation -70.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds