Wall clock time and date at job start Wed Apr 1 2020 04:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30879 * 126.20349 * 2 1 4 4 C 1.34561 * 107.28870 * 180.27548 * 3 2 1 5 5 C 1.47822 * 126.02510 * 179.71465 * 4 3 2 6 6 O 1.21564 * 120.00137 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99983 * 0.02568 * 5 4 3 8 8 C 1.46502 * 120.00065 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47328 * 180.02562 * 8 7 5 10 10 O 1.21299 * 119.99795 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00218 * 180.02562 * 9 8 7 12 12 C 1.37099 * 119.99983 * 180.02562 * 11 9 8 13 13 H 1.08004 * 119.99729 * 359.97438 * 12 11 9 14 14 C 1.38944 * 119.99867 * 179.97438 * 12 11 9 15 15 N 1.31412 * 120.00248 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99942 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47160 * 90.00487 * 16 14 12 18 18 H 1.48503 * 109.47460 * 210.00582 * 16 14 12 19 19 H 1.48494 * 109.47324 * 330.00496 * 16 14 12 20 20 N 1.31581 * 107.95100 * 359.73932 * 4 3 2 21 21 N 1.28851 * 108.70313 * 359.97438 * 20 4 3 22 22 C 1.40181 * 125.76918 * 180.02562 * 21 20 4 23 23 C 1.38851 * 120.04767 * 144.74430 * 22 21 20 24 24 C 1.38088 * 119.96419 * 180.29919 * 23 22 21 25 25 C 1.38502 * 120.03836 * 359.97438 * 24 23 22 26 26 F 1.35095 * 119.95378 * 180.02562 * 25 24 23 27 27 C 1.38490 * 120.08596 * 0.02562 * 25 24 23 28 28 C 1.38091 * 120.04292 * 0.02562 * 27 25 24 29 29 H 1.09000 * 109.46596 * 270.16769 * 1 2 3 30 30 H 1.09000 * 109.46982 * 30.16602 * 1 2 3 31 31 H 1.08996 * 109.47108 * 150.16730 * 1 2 3 32 32 H 0.97003 * 120.00079 * 0.02562 * 7 5 4 33 33 H 1.09006 * 109.46991 * 300.00142 * 8 7 5 34 34 H 1.09002 * 109.47047 * 60.00171 * 8 7 5 35 35 H 0.96998 * 119.99627 * 359.97438 * 11 9 8 36 36 H 0.96995 * 120.00012 * 179.97438 * 15 14 12 37 37 H 1.08009 * 120.01480 * 0.25096 * 23 22 21 38 38 H 1.08000 * 119.98511 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.98101 * 179.97438 * 27 25 24 40 40 H 1.08004 * 120.02386 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2801 1.0561 0.0000 4 6 3.5530 0.6199 -0.0062 5 6 4.7630 1.4691 -0.0144 6 8 5.8653 0.9565 -0.0200 7 7 4.6441 2.8116 -0.0158 8 6 5.8432 3.6531 -0.0245 9 6 5.4383 5.1047 -0.0236 10 8 4.2635 5.4066 -0.0159 11 7 6.3814 6.0675 -0.0313 12 6 6.0129 7.3880 -0.0300 13 1 4.9669 7.6568 -0.0231 14 6 6.9853 8.3806 -0.0374 15 7 8.2580 8.0536 -0.0463 16 14 6.4832 10.1798 -0.0363 17 1 6.3594 10.6583 1.3641 18 1 7.5135 10.9817 -0.7441 19 1 5.1778 10.3300 -0.7280 20 7 3.5309 -0.6957 -0.0041 21 7 2.3037 -1.0883 0.0036 22 6 1.8699 -2.4213 0.0085 23 6 0.7254 -2.7773 0.7095 24 6 0.3030 -4.0920 0.7183 25 6 1.0200 -5.0552 0.0280 26 9 0.6049 -6.3408 0.0374 27 6 2.1618 -4.7021 -0.6717 28 6 2.5878 -3.3886 -0.6820 29 1 -0.3632 0.0030 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8914 -0.5112 32 1 3.7645 3.2206 -0.0109 33 1 6.4413 3.4426 0.8622 34 1 6.4303 3.4399 -0.9178 35 1 7.3208 5.8260 -0.0371 36 1 8.9367 8.7465 -0.0518 37 1 0.1662 -2.0265 1.2481 38 1 -0.5869 -4.3694 1.2637 39 1 2.7198 -5.4547 -1.2090 40 1 3.4781 -3.1135 -1.2281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343512900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:53 Heat of formation + Delta-G solvation = -14.126317 kcal Electronic energy + Delta-G solvation = -28115.184869 eV Core-core repulsion = 23652.891783 eV Total energy + Delta-G solvation = -4462.293086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.03009 -44.91568 -41.06413 -40.28186 -39.81505 -36.31345 -35.76285 -35.32738 -34.48182 -33.37699 -32.36071 -30.93956 -29.67823 -29.01488 -26.86245 -25.46478 -24.57295 -23.57768 -22.22199 -21.60473 -21.34510 -20.10218 -19.66575 -18.94094 -18.57076 -18.23902 -17.49055 -17.19295 -16.96879 -16.75257 -16.64532 -16.46500 -15.89273 -15.70187 -15.49738 -15.27099 -15.02932 -14.85802 -14.49763 -14.33457 -14.12093 -13.99101 -13.92774 -13.65568 -13.54071 -13.43966 -12.93522 -12.90334 -12.44659 -12.24371 -12.11787 -11.88591 -11.75349 -11.65381 -11.56652 -10.86962 -10.57664 -10.37278 -10.36844 -10.08833 -9.65377 -8.50169 -6.00360 -0.62538 -0.01506 0.27743 0.86260 0.90292 1.37254 1.43822 1.56314 1.74268 1.89294 2.05653 2.27002 2.30456 2.77356 3.05003 3.07143 3.16759 3.21887 3.40537 3.59332 3.61759 3.98513 4.03518 4.19041 4.30939 4.37149 4.37999 4.50700 4.60468 4.62452 4.72709 4.84881 4.87528 4.95206 5.00829 5.04501 5.21325 5.39396 5.42485 5.68747 5.91685 6.19570 6.48698 6.71713 6.89559 7.04155 7.43516 7.94489 8.66632 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.035337 B = 0.001683 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.176911 B =16636.362867 C =17324.915305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.230 3.770 3 N -0.497 5.497 4 C 0.136 3.864 5 C 0.615 3.385 6 O -0.552 6.552 7 N -0.683 5.683 8 C 0.121 3.879 9 C 0.433 3.567 10 O -0.622 6.622 11 N -0.556 5.556 12 C -0.338 4.338 13 H 0.087 0.913 14 C -0.010 4.010 15 N -0.915 5.915 16 Si 0.998 3.002 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.270 1.270 20 N -0.271 5.271 21 N -0.250 5.250 22 C 0.085 3.915 23 C -0.073 4.073 24 C -0.121 4.121 25 C 0.108 3.892 26 F -0.135 7.135 27 C -0.134 4.134 28 C -0.077 4.077 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.420 0.580 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.400 0.600 36 H 0.280 0.720 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.164 0.836 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.752 -26.992 0.599 32.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.043 4.043 3 N -0.223 5.223 4 C -0.143 4.143 5 C 0.398 3.602 6 O -0.428 6.428 7 N -0.337 5.337 8 C -0.006 4.006 9 C 0.219 3.781 10 O -0.510 6.510 11 N -0.192 5.192 12 C -0.467 4.467 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.555 5.555 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.195 1.195 20 N -0.108 5.108 21 N -0.039 5.039 22 C -0.004 4.004 23 C -0.093 4.093 24 C -0.140 4.140 25 C 0.088 3.912 26 F -0.114 7.114 27 C -0.153 4.153 28 C -0.097 4.097 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.259 0.741 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.192 0.808 38 H 0.200 0.800 39 H 0.182 0.818 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.020 -27.022 0.592 32.485 hybrid contribution 0.450 0.759 -0.144 0.895 sum -17.569 -26.263 0.448 31.601 Atomic orbital electron populations 1.20905 0.78839 1.07018 1.06917 1.26027 0.99391 0.80323 0.98567 1.71352 0.99958 1.29481 1.21533 1.23369 0.93083 0.88811 1.09082 1.16318 0.85455 0.81475 0.76968 1.90793 1.26457 1.74102 1.51438 1.45351 1.11539 1.04287 1.72497 1.20946 0.87524 0.86961 1.05199 1.20295 0.86177 0.87718 0.83860 1.90499 1.19028 1.83555 1.57891 1.41802 1.08629 1.05436 1.63334 1.19752 0.94564 0.81939 1.50429 0.89542 1.26129 0.94602 1.04606 0.95736 1.69679 1.00312 1.36316 1.49178 0.84854 0.78091 0.76246 0.78702 1.19544 1.19628 1.19488 1.74357 1.02897 1.13536 1.20026 1.44614 1.02712 1.07481 1.49128 1.17965 0.99055 0.79032 1.04373 1.21223 0.93951 0.97763 0.96350 1.21339 1.02037 0.90463 1.00124 1.18012 0.94941 0.79203 0.99022 1.91548 1.89674 1.35309 1.94825 1.21220 0.96636 0.96411 1.01007 1.20946 0.99543 0.91854 0.97322 0.85804 0.87440 0.86829 0.74085 0.87769 0.87764 0.76574 0.91057 0.80808 0.79955 0.81814 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 8.67 71.24 0.62 0.00 16 2 C 0.23 4.78 7.79 138.07 1.08 5.86 16 3 N -0.50 -14.74 11.09 -180.72 -2.00 -16.74 16 4 C 0.14 4.62 7.96 137.09 1.09 5.71 16 5 C 0.62 23.36 7.83 86.78 0.68 24.04 16 6 O -0.55 -23.25 17.09 -3.92 -0.07 -23.31 16 7 N -0.68 -25.83 5.52 -469.71 -2.60 -28.42 16 8 C 0.12 4.63 6.15 85.63 0.53 5.16 16 9 C 0.43 20.57 7.85 87.66 0.69 21.26 16 10 O -0.62 -33.35 15.24 -3.09 -0.05 -33.40 16 11 N -0.56 -28.31 5.29 -306.98 -1.62 -29.94 16 12 C -0.34 -18.79 9.68 84.04 0.81 -17.98 16 13 H 0.09 5.07 7.16 -2.91 -0.02 5.04 16 14 C -0.01 -0.52 5.50 84.92 0.47 -0.06 16 15 N -0.91 -48.81 13.05 21.66 0.28 -48.53 16 16 Si 1.00 42.06 29.55 68.60 2.03 44.09 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 N -0.27 -8.40 11.76 -52.43 -0.62 -9.01 16 21 N -0.25 -5.59 3.47 -179.17 -0.62 -6.21 16 22 C 0.09 1.29 6.22 38.10 0.24 1.52 16 23 C -0.07 -0.52 8.26 22.38 0.18 -0.34 16 24 C -0.12 -0.60 10.02 22.30 0.22 -0.37 16 25 C 0.11 0.95 7.30 22.39 0.16 1.11 16 26 F -0.14 -1.43 17.26 44.97 0.78 -0.65 16 27 C -0.13 -1.33 10.02 22.29 0.22 -1.11 16 28 C -0.08 -1.11 9.70 22.38 0.22 -0.89 16 29 H 0.12 0.32 7.72 -2.39 -0.02 0.30 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 0.29 6.89 -2.39 -0.02 0.27 16 32 H 0.42 16.40 7.15 -92.71 -0.66 15.73 16 33 H 0.10 3.71 8.14 -2.38 -0.02 3.69 16 34 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 35 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 36 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.17 0.32 6.09 -2.91 -0.02 0.30 16 38 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 39 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 40 H 0.14 2.28 8.02 -2.91 -0.02 2.25 16 Total: -1.00 -77.05 363.37 2.47 -74.58 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.25 Total: 33.64 kcal Atomic # 6 Polarization: 36.71 SS G_CDS: 7.21 Total: 43.92 kcal Atomic # 7 Polarization: -131.68 SS G_CDS: -7.18 Total: -138.86 kcal Atomic # 8 Polarization: -56.60 SS G_CDS: -0.11 Total: -56.71 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.78 Total: -0.65 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -77.05 2.47 -74.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343512900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.451 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds