Wall clock time and date at job start Wed Apr 1 2020 05:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47476 * 2 1 4 4 C 1.50703 * 109.47142 * 119.99832 * 2 1 3 5 5 H 1.08007 * 120.00045 * 114.76741 * 4 2 1 6 6 C 1.37883 * 120.00070 * 294.77292 * 4 2 1 7 7 N 1.31514 * 119.99728 * 351.80542 * 6 4 2 8 8 Si 1.86793 * 120.00020 * 172.08264 * 6 4 2 9 9 H 1.48501 * 109.47217 * 265.01217 * 8 6 4 10 10 H 1.48507 * 109.47262 * 25.00681 * 8 6 4 11 11 H 1.48493 * 109.47503 * 145.00971 * 8 6 4 12 12 N 1.46500 * 109.47257 * 240.00019 * 2 1 3 13 13 C 1.34774 * 120.00227 * 85.00089 * 12 2 1 14 14 O 1.21365 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.49332 * 119.99929 * 180.02562 * 13 12 2 16 16 O 1.21387 * 120.00266 * 359.97438 * 15 13 12 17 17 N 1.34780 * 119.99774 * 180.02562 * 15 13 12 18 18 C 1.39761 * 119.99838 * 184.72052 * 17 15 13 19 19 C 1.38978 * 120.00227 * 324.62604 * 18 17 15 20 20 C 1.38007 * 120.03835 * 179.76777 * 19 18 17 21 21 C 1.38840 * 120.02821 * 0.50409 * 20 19 18 22 22 N 1.40306 * 119.99688 * 179.76789 * 21 20 19 23 23 C 1.34686 * 126.84100 * 359.68873 * 22 21 20 24 24 N 1.30874 * 108.04004 * 179.83302 * 23 22 21 25 25 C 1.33231 * 109.84349 * 0.44334 * 24 23 22 26 26 N 1.30784 * 108.99137 * 359.72298 * 25 24 23 27 27 C 1.39066 * 120.00120 * 359.74624 * 21 20 19 28 28 F 1.35102 * 120.01513 * 180.02562 * 27 21 20 29 29 C 1.38211 * 119.96666 * 0.02562 * 27 21 20 30 30 H 1.08998 * 109.47518 * 62.98556 * 1 2 3 31 31 H 1.08998 * 109.47363 * 182.98554 * 1 2 3 32 32 H 1.09002 * 109.47368 * 302.98022 * 1 2 3 33 33 H 0.97000 * 119.99841 * 180.27859 * 7 6 4 34 34 H 0.97005 * 119.99939 * 264.99939 * 12 2 1 35 35 H 0.96995 * 120.00132 * 4.71615 * 17 15 13 36 36 H 1.08005 * 119.97777 * 359.97438 * 19 18 17 37 37 H 1.07991 * 119.98549 * 180.25139 * 20 19 18 38 38 H 1.08001 * 125.98218 * 359.96605 * 23 22 21 39 39 H 1.07999 * 125.50833 * 179.75884 * 25 24 23 40 40 H 1.08001 * 120.01522 * 180.02562 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5817 -1.6352 1.1337 6 6 1.7903 -0.1798 2.4800 7 7 1.2658 1.0208 2.5941 8 14 2.2148 -1.1631 4.0104 9 1 1.0106 -1.8957 4.4778 10 1 3.2922 -2.1342 3.6919 11 1 2.6789 -0.2414 5.0781 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8580 1.1592 -2.4117 15 6 2.6443 -0.7225 -3.5765 16 8 2.9330 -1.9002 -3.5220 17 7 2.7736 -0.0500 -4.7374 18 6 3.1440 -0.7295 -5.9011 19 6 4.0409 -1.7889 -5.8315 20 6 4.4036 -2.4635 -6.9796 21 6 3.8808 -2.0779 -8.2066 22 7 4.2537 -2.7611 -9.3739 23 6 5.1069 -3.7994 -9.4643 24 7 5.1835 -4.1526 -10.7222 25 6 4.4065 -3.3626 -11.4619 26 7 3.8164 -2.4946 -10.6817 27 6 2.9872 -1.0147 -8.2785 28 9 2.4779 -0.6395 -9.4723 29 6 2.6204 -0.3421 -7.1281 30 1 -0.3634 0.4668 -0.9155 31 1 -0.3634 -1.0262 0.0535 32 1 -0.3634 0.5594 0.8621 33 1 1.0994 1.3957 3.4731 34 1 2.2490 -1.6318 -1.1526 35 1 2.6094 0.9056 -4.7652 36 1 4.4518 -2.0864 -4.8780 37 1 5.0975 -3.2891 -6.9240 38 1 5.6337 -4.2612 -8.6424 39 1 4.2832 -3.4287 -12.5328 40 1 1.9262 0.4834 -7.1830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438870530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:50 Heat of formation + Delta-G solvation = 21.143226 kcal Electronic energy + Delta-G solvation = -28603.084984 eV Core-core repulsion = 24142.321301 eV Total energy + Delta-G solvation = -4460.763684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.20236 -42.67918 -41.10852 -39.41390 -38.13802 -35.92833 -35.05492 -33.56916 -32.50103 -31.91176 -31.09256 -29.54314 -29.06629 -25.59703 -25.31226 -24.18593 -23.68106 -22.09286 -21.81870 -20.94767 -19.83964 -19.01820 -18.86568 -18.16336 -16.90484 -16.60156 -16.39476 -16.22987 -15.90536 -15.68477 -15.59728 -15.53653 -15.24880 -14.72866 -14.45015 -14.37722 -14.00920 -13.49049 -13.38652 -13.26197 -13.03391 -12.73301 -12.56816 -12.00659 -11.89099 -11.66472 -11.42072 -11.21003 -11.14991 -10.89524 -10.54365 -10.51881 -10.37684 -10.31197 -10.23141 -9.47497 -9.30732 -9.23851 -8.68205 -8.40353 -8.28369 -6.27443 -4.34205 0.07162 0.60382 1.32442 1.68635 1.68940 2.31986 2.49028 3.02455 3.18471 3.26264 3.28211 3.47934 3.54610 3.81634 3.82954 3.92120 4.25473 4.28069 4.37379 4.57974 4.74669 4.82240 4.93932 5.07427 5.12406 5.33896 5.48886 5.64770 5.77890 5.86098 5.95773 6.18794 6.48999 6.57639 6.66031 6.77237 6.85895 7.05462 7.22455 7.50959 7.54503 7.55815 7.67468 7.86331 8.28272 8.48114 8.74284 9.32026 10.81022 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.001880 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.516115 B =14886.935740 C =15673.546411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.260 3.740 3 H 0.062 0.938 4 C -0.540 4.540 5 H 0.065 0.935 6 C 0.070 3.930 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.285 1.285 12 N -0.665 5.665 13 C 0.495 3.505 14 O -0.532 6.532 15 C 0.512 3.488 16 O -0.500 6.500 17 N -0.651 5.651 18 C 0.183 3.817 19 C -0.107 4.107 20 C -0.083 4.083 21 C 0.090 3.910 22 N -0.326 5.326 23 C 0.260 3.740 24 N -0.537 5.537 25 C 0.202 3.798 26 N -0.303 5.303 27 C 0.133 3.867 28 F -0.112 7.112 29 C -0.162 4.162 30 H 0.020 0.980 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.428 0.572 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.224 0.776 39 H 0.223 0.777 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 -5.951 -21.474 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.159 3.841 3 H 0.079 0.921 4 C -0.579 4.579 5 H 0.083 0.917 6 C -0.134 4.134 7 N -0.517 5.517 8 Si 0.730 3.270 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.313 5.313 13 C 0.273 3.727 14 O -0.410 6.410 15 C 0.295 3.705 16 O -0.373 6.373 17 N -0.298 5.298 18 C 0.087 3.913 19 C -0.128 4.128 20 C -0.104 4.104 21 C -0.004 4.004 22 N -0.110 5.110 23 C -0.035 4.035 24 N -0.263 5.263 25 C -0.101 4.101 26 N -0.128 5.128 27 C 0.111 3.889 28 F -0.090 7.090 29 C -0.184 4.184 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.267 0.733 36 H 0.179 0.821 37 H 0.165 0.835 38 H 0.241 0.759 39 H 0.239 0.761 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.705 -5.502 -21.639 23.045 hybrid contribution 0.103 -0.427 0.780 0.895 sum 5.809 -5.929 -20.859 22.449 Atomic orbital electron populations 1.22036 0.98062 0.99842 1.00230 1.19029 0.91108 0.94677 0.79303 0.92059 1.21141 1.37505 1.09167 0.90045 0.91668 1.24885 0.94726 0.94693 0.99138 1.69961 1.42932 1.14353 1.24451 0.86415 0.78725 0.79807 0.82087 1.20439 1.19689 1.21047 1.46517 1.61022 1.14569 1.09218 1.19536 0.81493 0.87307 0.84359 1.90758 1.50668 1.15097 1.84483 1.21106 0.77595 0.87037 0.84733 1.90733 1.46441 1.15597 1.84482 1.43272 1.66917 1.13440 1.06167 1.17517 0.93951 0.94399 0.85463 1.21274 0.96244 0.95650 0.99588 1.20616 1.00320 1.00782 0.88689 1.17600 1.02155 0.96399 0.84252 1.47647 1.33070 1.24803 1.05459 1.26246 0.92256 0.87907 0.97086 1.70641 1.25254 1.29022 1.01338 1.26235 0.92514 0.89839 1.01473 1.78415 1.23464 1.24338 0.86618 1.16833 0.95716 0.94561 0.81835 1.91612 1.84834 1.90062 1.42475 1.20831 1.03635 1.04055 0.89837 0.96085 0.94678 0.90327 0.92381 0.76266 0.73263 0.82086 0.83483 0.75936 0.76064 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.28 37.15 0.34 -2.90 16 2 C 0.26 6.12 2.43 -69.08 -0.17 5.95 16 3 H 0.06 1.65 7.54 -51.93 -0.39 1.26 16 4 C -0.54 -13.55 8.67 -34.44 -0.30 -13.85 16 5 H 0.07 1.58 7.73 -52.48 -0.41 1.17 16 6 C 0.07 1.80 5.24 -17.82 -0.09 1.70 16 7 N -0.88 -23.71 12.10 55.43 0.67 -23.04 16 8 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.66 -12.94 5.06 -55.40 -0.28 -13.22 16 13 C 0.50 8.81 7.85 -11.64 -0.09 8.72 16 14 O -0.53 -10.65 16.14 5.48 0.09 -10.56 16 15 C 0.51 7.27 7.73 -11.64 -0.09 7.18 16 16 O -0.50 -7.47 13.92 5.46 0.08 -7.39 16 17 N -0.65 -7.19 5.32 -10.28 -0.05 -7.24 16 18 C 0.18 1.82 6.29 -83.72 -0.53 1.29 16 19 C -0.11 -0.99 8.68 -39.39 -0.34 -1.33 16 20 C -0.08 -0.63 9.46 -39.44 -0.37 -1.00 16 21 C 0.09 0.87 6.71 -83.45 -0.56 0.31 16 22 N -0.33 -3.30 3.82 -11.73 -0.04 -3.34 16 23 C 0.26 2.09 11.98 -90.39 -1.08 1.01 16 24 N -0.54 -5.21 11.19 -15.75 -0.18 -5.38 16 25 C 0.20 1.86 13.03 -91.76 -1.20 0.67 16 26 N -0.30 -3.46 10.99 29.30 0.32 -3.14 16 27 C 0.13 1.38 7.29 -39.28 -0.29 1.10 16 28 F -0.11 -1.34 15.59 2.25 0.04 -1.31 16 29 C -0.16 -1.47 9.94 -39.34 -0.39 -1.86 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.93 6.90 -51.93 -0.36 1.57 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.40 7.19 8.00 -40.82 -0.33 6.87 16 35 H 0.43 4.13 8.30 -40.82 -0.34 3.79 16 36 H 0.16 1.59 6.23 -52.48 -0.33 1.27 16 37 H 0.15 0.62 6.80 -52.49 -0.36 0.26 16 38 H 0.22 0.75 7.10 -52.49 -0.37 0.38 16 39 H 0.22 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -31.81 358.87 -7.83 -39.65 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -3.70 Total: 7.79 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -5.15 Total: 6.99 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.44 Total: -55.37 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.16 Total: -17.96 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.81 -7.83 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438870530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.790 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds