Wall clock time and date at job start Wed Apr 1 2020 05:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47476 * 2 1 4 4 C 1.50703 * 109.47142 * 119.99832 * 2 1 3 5 5 H 1.08007 * 120.00045 * 114.76741 * 4 2 1 6 6 C 1.37883 * 120.00070 * 294.77292 * 4 2 1 7 7 N 1.31514 * 119.99728 * 351.80542 * 6 4 2 8 8 Si 1.86793 * 120.00020 * 172.08264 * 6 4 2 9 9 H 1.48501 * 109.47217 * 265.01217 * 8 6 4 10 10 H 1.48507 * 109.47262 * 25.00681 * 8 6 4 11 11 H 1.48493 * 109.47503 * 145.00971 * 8 6 4 12 12 N 1.46500 * 109.47257 * 240.00019 * 2 1 3 13 13 C 1.34774 * 120.00227 * 85.00089 * 12 2 1 14 14 O 1.21365 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.49332 * 119.99929 * 180.02562 * 13 12 2 16 16 O 1.21387 * 120.00266 * 359.97438 * 15 13 12 17 17 N 1.34780 * 119.99774 * 180.02562 * 15 13 12 18 18 C 1.39761 * 119.99838 * 184.72052 * 17 15 13 19 19 C 1.38978 * 120.00227 * 324.62604 * 18 17 15 20 20 C 1.38007 * 120.03835 * 179.76777 * 19 18 17 21 21 C 1.38840 * 120.02821 * 0.50409 * 20 19 18 22 22 N 1.40306 * 119.99688 * 179.76789 * 21 20 19 23 23 C 1.34686 * 126.84100 * 359.68873 * 22 21 20 24 24 N 1.30874 * 108.04004 * 179.83302 * 23 22 21 25 25 C 1.33231 * 109.84349 * 0.44334 * 24 23 22 26 26 N 1.30784 * 108.99137 * 359.72298 * 25 24 23 27 27 C 1.39066 * 120.00120 * 359.74624 * 21 20 19 28 28 F 1.35102 * 120.01513 * 180.02562 * 27 21 20 29 29 C 1.38211 * 119.96666 * 0.02562 * 27 21 20 30 30 H 1.08998 * 109.47518 * 62.98556 * 1 2 3 31 31 H 1.08998 * 109.47363 * 182.98554 * 1 2 3 32 32 H 1.09002 * 109.47368 * 302.98022 * 1 2 3 33 33 H 0.97000 * 119.99841 * 180.27859 * 7 6 4 34 34 H 0.97005 * 119.99939 * 264.99939 * 12 2 1 35 35 H 0.96995 * 120.00132 * 4.71615 * 17 15 13 36 36 H 1.08005 * 119.97777 * 359.97438 * 19 18 17 37 37 H 1.07991 * 119.98549 * 180.25139 * 20 19 18 38 38 H 1.08001 * 125.98218 * 359.96605 * 23 22 21 39 39 H 1.07999 * 125.50833 * 179.75884 * 25 24 23 40 40 H 1.08001 * 120.01522 * 180.02562 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5817 -1.6352 1.1337 6 6 1.7903 -0.1798 2.4800 7 7 1.2658 1.0208 2.5941 8 14 2.2148 -1.1631 4.0104 9 1 1.0106 -1.8957 4.4778 10 1 3.2922 -2.1342 3.6919 11 1 2.6789 -0.2414 5.0781 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8580 1.1592 -2.4117 15 6 2.6443 -0.7225 -3.5765 16 8 2.9330 -1.9002 -3.5220 17 7 2.7736 -0.0500 -4.7374 18 6 3.1440 -0.7295 -5.9011 19 6 4.0409 -1.7889 -5.8315 20 6 4.4036 -2.4635 -6.9796 21 6 3.8808 -2.0779 -8.2066 22 7 4.2537 -2.7611 -9.3739 23 6 5.1069 -3.7994 -9.4643 24 7 5.1835 -4.1526 -10.7222 25 6 4.4065 -3.3626 -11.4619 26 7 3.8164 -2.4946 -10.6817 27 6 2.9872 -1.0147 -8.2785 28 9 2.4779 -0.6395 -9.4723 29 6 2.6204 -0.3421 -7.1281 30 1 -0.3634 0.4668 -0.9155 31 1 -0.3634 -1.0262 0.0535 32 1 -0.3634 0.5594 0.8621 33 1 1.0994 1.3957 3.4731 34 1 2.2490 -1.6318 -1.1526 35 1 2.6094 0.9056 -4.7652 36 1 4.4518 -2.0864 -4.8780 37 1 5.0975 -3.2891 -6.9240 38 1 5.6337 -4.2612 -8.6424 39 1 4.2832 -3.4287 -12.5328 40 1 1.9262 0.4834 -7.1830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438870530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:50 Heat of formation + Delta-G solvation = 1.414249 kcal Electronic energy + Delta-G solvation = -28603.940497 eV Core-core repulsion = 24142.321301 eV Total energy + Delta-G solvation = -4461.619197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.02284 -43.34521 -42.18372 -40.52213 -39.32280 -37.12382 -36.46683 -34.50462 -34.20200 -32.60231 -31.79857 -31.20365 -29.97703 -27.33678 -26.60308 -24.90819 -24.64016 -23.11312 -22.49402 -22.24110 -21.27276 -20.22304 -19.60798 -19.12490 -18.22954 -17.61984 -17.54473 -17.26966 -16.91799 -16.82790 -16.61839 -16.53190 -16.37578 -15.95069 -15.44760 -15.16454 -15.05051 -14.95721 -14.42110 -14.34531 -14.07078 -13.88236 -13.77343 -13.44246 -13.04019 -12.98857 -12.78105 -12.63291 -12.60736 -12.39115 -12.33866 -12.11582 -11.23091 -11.17909 -11.09703 -10.98921 -10.71115 -10.60361 -10.12754 -9.98896 -9.18037 -8.22075 -6.35309 -0.66787 -0.09812 0.27137 0.83453 1.03010 1.21688 1.46445 1.48402 1.58252 1.84132 2.07041 2.37970 2.39475 2.61094 2.91138 3.11395 3.22820 3.33867 3.44365 3.64911 3.78246 3.90171 4.06567 4.18755 4.45798 4.69277 4.70574 4.79372 4.84656 4.89679 4.98410 4.99766 5.17934 5.29193 5.30195 5.42648 5.47625 5.59702 5.70535 5.83868 5.88997 5.97365 6.43920 6.67405 6.74023 6.90299 7.08178 7.35971 8.86793 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.001880 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.516115 B =14886.935740 C =15673.546411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.266 3.734 3 H 0.020 0.980 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.968 3.032 9 H -0.274 1.274 10 H -0.263 1.263 11 H -0.287 1.287 12 N -0.668 5.668 13 C 0.495 3.505 14 O -0.556 6.556 15 C 0.526 3.474 16 O -0.505 6.505 17 N -0.635 5.635 18 C 0.166 3.834 19 C -0.107 4.107 20 C -0.067 4.067 21 C 0.090 3.910 22 N -0.339 5.339 23 C 0.269 3.731 24 N -0.560 5.560 25 C 0.204 3.796 26 N -0.345 5.345 27 C 0.110 3.890 28 F -0.126 7.126 29 C -0.150 4.150 30 H 0.026 0.974 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.267 0.733 34 H 0.412 0.588 35 H 0.434 0.566 36 H 0.160 0.840 37 H 0.187 0.813 38 H 0.268 0.732 39 H 0.250 0.750 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 -8.019 -22.092 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.163 3.837 3 H 0.038 0.962 4 C -0.589 4.589 5 H 0.091 0.909 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.187 1.187 11 H -0.213 1.213 12 N -0.318 5.318 13 C 0.275 3.725 14 O -0.436 6.436 15 C 0.308 3.692 16 O -0.379 6.379 17 N -0.282 5.282 18 C 0.071 3.929 19 C -0.128 4.128 20 C -0.088 4.088 21 C -0.005 4.005 22 N -0.123 5.123 23 C -0.025 4.025 24 N -0.286 5.286 25 C -0.098 4.098 26 N -0.171 5.171 27 C 0.088 3.912 28 F -0.104 7.104 29 C -0.171 4.171 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.248 0.752 35 H 0.275 0.725 36 H 0.177 0.823 37 H 0.204 0.796 38 H 0.283 0.717 39 H 0.266 0.734 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.953 -7.581 -22.312 24.569 hybrid contribution -0.224 0.215 0.824 0.880 sum 6.728 -7.366 -21.489 23.691 Atomic orbital electron populations 1.21867 0.97577 1.00148 0.99397 1.18628 0.91452 0.92810 0.80776 0.96207 1.21474 1.37293 1.09366 0.90719 0.90855 1.25721 0.94700 0.95475 1.02155 1.70087 1.44172 1.15882 1.25053 0.85390 0.78689 0.78365 0.78264 1.19945 1.18721 1.21268 1.46229 1.61722 1.14903 1.08901 1.20076 0.80405 0.86996 0.85038 1.90743 1.51376 1.16382 1.85121 1.20138 0.78110 0.86610 0.84344 1.90739 1.47153 1.15526 1.84522 1.43036 1.65934 1.13668 1.05584 1.17586 0.95202 0.95236 0.84905 1.21354 0.95954 0.95357 1.00105 1.20918 0.99875 1.00987 0.87004 1.17848 1.01738 0.96007 0.84898 1.47721 1.33843 1.25586 1.05173 1.27168 0.90911 0.86619 0.97771 1.70688 1.25987 1.29695 1.02252 1.26859 0.91434 0.88863 1.02642 1.78374 1.25162 1.25934 0.87594 1.17087 0.96836 0.95654 0.81653 1.91573 1.85214 1.90340 1.43316 1.20858 1.03232 1.03953 0.89088 0.95512 0.93470 0.92677 0.92415 0.75194 0.72527 0.82295 0.79611 0.71657 0.73398 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 9.28 71.98 0.67 -5.35 16 2 C 0.27 12.74 2.43 44.24 0.11 12.84 16 3 H 0.02 1.12 7.54 -2.39 -0.02 1.10 16 4 C -0.55 -27.60 8.67 25.60 0.22 -27.38 16 5 H 0.07 3.48 7.73 -2.91 -0.02 3.45 16 6 C 0.02 1.05 5.24 84.66 0.44 1.50 16 7 N -0.91 -50.16 12.10 21.45 0.26 -49.90 16 8 Si 0.97 40.34 29.54 68.60 2.03 42.37 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.67 -25.93 5.06 -447.56 -2.27 -28.20 16 13 C 0.50 17.53 7.85 87.23 0.68 18.21 16 14 O -0.56 -22.55 16.14 -3.29 -0.05 -22.61 16 15 C 0.53 14.31 7.73 87.23 0.67 14.99 16 16 O -0.51 -14.21 13.92 -3.36 -0.05 -14.26 16 17 N -0.63 -13.18 5.32 -304.79 -1.62 -14.80 16 18 C 0.17 3.01 6.29 38.22 0.24 3.25 16 19 C -0.11 -1.72 8.68 22.39 0.19 -1.53 16 20 C -0.07 -0.80 9.46 22.36 0.21 -0.59 16 21 C 0.09 1.54 6.71 38.13 0.26 1.80 16 22 N -0.34 -6.23 3.82 -191.01 -0.73 -6.96 16 23 C 0.27 3.56 11.98 180.27 2.16 5.72 16 24 N -0.56 -9.71 11.19 -203.74 -2.28 -11.99 16 25 C 0.20 3.50 13.03 180.75 2.35 5.85 16 26 N -0.35 -7.59 10.99 -61.21 -0.67 -8.26 16 27 C 0.11 2.17 7.29 22.46 0.16 2.34 16 28 F -0.13 -3.02 15.59 44.97 0.70 -2.32 16 29 C -0.15 -2.53 9.94 22.43 0.22 -2.31 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.05 2.77 6.90 -2.39 -0.02 2.75 16 33 H 0.27 13.88 8.31 -92.71 -0.77 13.10 16 34 H 0.41 14.40 8.00 -92.70 -0.74 13.66 16 35 H 0.43 7.94 8.30 -92.71 -0.77 7.17 16 36 H 0.16 2.73 6.23 -2.91 -0.02 2.71 16 37 H 0.19 0.66 6.80 -2.92 -0.02 0.64 16 38 H 0.27 0.57 7.10 -2.91 -0.02 0.55 16 39 H 0.25 2.28 8.06 -2.91 -0.02 2.25 16 40 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -69.90 358.87 3.56 -66.34 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.36 Total: 21.25 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 8.60 Total: 29.34 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -7.31 Total: -120.12 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.10 Total: -36.87 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.70 Total: -2.32 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -69.90 3.56 -66.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438870530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.756 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds