Wall clock time and date at job start Wed Apr 1 2020 04:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47376 * 2 1 4 4 H 1.09001 * 109.46940 * 54.81457 * 3 2 1 5 5 C 1.50691 * 109.47012 * 174.81957 * 3 2 1 6 6 H 1.08000 * 120.00161 * 120.00338 * 5 3 2 7 7 C 1.37883 * 120.00318 * 299.99630 * 5 3 2 8 8 N 1.31511 * 120.00363 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99574 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.47153 * 90.00022 * 9 7 5 11 11 H 1.48496 * 109.46834 * 209.99646 * 9 7 5 12 12 H 1.48495 * 109.47359 * 329.99662 * 9 7 5 13 13 N 1.46901 * 109.46871 * 294.81931 * 3 2 1 14 14 C 1.46907 * 110.99672 * 157.78967 * 13 3 2 15 15 C 1.50699 * 109.46859 * 185.08251 * 14 13 3 16 16 N 1.30562 * 126.48025 * 264.10613 * 15 14 13 17 17 N 1.28638 * 110.09451 * 179.97438 * 16 15 14 18 18 C 1.31367 * 109.77145 * 359.97438 * 17 16 15 19 19 N 1.36166 * 106.87362 * 359.97438 * 18 17 16 20 20 C 1.40081 * 120.97737 * 180.02562 * 19 18 17 21 21 C 1.39071 * 129.60776 * 179.97438 * 20 19 18 22 22 C 1.33045 * 115.63351 * 180.02562 * 21 20 19 23 23 S 1.70409 * 111.24179 * 0.22994 * 22 21 20 24 24 C 1.38258 * 118.32951 * 0.02562 * 20 19 18 25 25 C 1.42043 * 119.68821 * 0.04361 * 24 20 19 26 26 O 1.21825 * 119.88942 * 179.97438 * 25 24 20 27 27 N 1.34600 * 120.22842 * 359.93503 * 25 24 20 28 28 C 1.46496 * 119.84899 * 180.02562 * 27 25 24 29 29 H 1.08998 * 109.47266 * 305.04516 * 1 2 3 30 30 H 1.09002 * 109.47027 * 65.04343 * 1 2 3 31 31 H 1.08993 * 109.47315 * 185.04253 * 1 2 3 32 32 H 1.09005 * 109.47102 * 239.99528 * 2 1 3 33 33 H 1.08996 * 109.46683 * 120.00187 * 2 1 3 34 34 H 0.96994 * 120.00265 * 180.02562 * 8 7 5 35 35 H 1.00893 * 111.00075 * 281.74460 * 13 3 2 36 36 H 1.08995 * 109.47315 * 65.07941 * 14 13 3 37 37 H 1.09002 * 109.47217 * 305.07823 * 14 13 3 38 38 H 1.08000 * 122.18282 * 0.03990 * 21 20 19 39 39 H 1.07993 * 124.37635 * 179.97438 * 22 21 20 40 40 H 1.08993 * 109.47457 * 269.98038 * 28 27 25 41 41 H 1.08996 * 109.47509 * 29.98700 * 28 27 25 42 42 H 1.09005 * 109.46956 * 149.97793 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6029 1.9824 0.8399 5 6 3.5415 1.4443 0.1283 6 1 4.1492 1.8881 -0.6465 7 6 4.1397 0.8796 1.2348 8 7 5.4500 0.8816 1.3471 9 14 3.0887 0.1116 2.5747 10 1 2.8687 -1.3249 2.2689 11 1 3.7821 0.2388 3.8816 12 1 1.7799 0.8101 2.6387 13 7 1.6552 2.0979 -1.2571 14 6 1.6402 3.5591 -1.1058 15 6 1.1225 4.1899 -2.3727 16 7 1.8416 4.6613 -3.3552 17 7 1.0769 5.1268 -4.2789 18 6 -0.1812 4.9755 -3.9324 19 7 -0.1851 4.3744 -2.7106 20 6 -1.3881 4.0720 -2.0598 21 6 -1.6007 3.4673 -0.8255 22 6 -2.8740 3.3120 -0.4725 23 16 -3.9250 3.9111 -1.6727 24 6 -2.5749 4.3986 -2.6894 25 6 -2.5459 5.0239 -3.9645 26 8 -3.5894 5.3129 -4.5228 27 7 -1.3694 5.2989 -4.5577 28 6 -1.3492 5.9445 -5.8726 29 1 -0.3634 0.5901 0.8413 30 1 -0.3633 0.4336 -0.9317 31 1 -0.3633 -1.0236 0.0903 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.8707 0.4840 2.1253 35 1 2.2640 1.8187 -2.0116 36 1 2.6518 3.9145 -0.9100 37 1 0.9918 3.8315 -0.2730 38 1 -0.7855 3.1452 -0.1947 39 1 -3.1995 2.8605 0.4530 40 1 -1.3567 5.1823 -6.6518 41 1 -2.2277 6.5809 -5.9785 42 1 -0.4481 6.5507 -5.9660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575932129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:27 Heat of formation + Delta-G solvation = 113.974317 kcal Electronic energy + Delta-G solvation = -28642.634119 eV Core-core repulsion = 24752.109069 eV Total energy + Delta-G solvation = -3890.525050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.76672 -40.70072 -38.51137 -36.89961 -36.28297 -34.27201 -33.04977 -31.98843 -30.75600 -29.96885 -27.78335 -27.33117 -25.30160 -25.10525 -23.56284 -22.64590 -22.11982 -20.96083 -20.11380 -19.56412 -18.97343 -17.37801 -17.27443 -17.13464 -16.46507 -15.81310 -15.59643 -15.33799 -15.11605 -14.53487 -14.36191 -14.18920 -14.07700 -13.51087 -13.15492 -13.10550 -12.90884 -12.66250 -12.61198 -12.40631 -11.92114 -11.83216 -11.71914 -11.55697 -11.41152 -11.24488 -11.00841 -10.91904 -10.77313 -10.48649 -10.42464 -9.95033 -9.64073 -9.43332 -9.38378 -8.73973 -8.68749 -8.49998 -7.70326 -6.22409 -4.25561 -0.23727 0.69316 1.19533 1.33097 1.79201 1.84659 2.24830 2.59788 2.93584 3.16286 3.24722 3.28908 3.80335 4.00821 4.16468 4.25737 4.51442 4.56088 4.88851 4.94137 5.06851 5.08735 5.14239 5.20209 5.33418 5.41679 5.49338 5.73482 5.76371 5.86739 5.87965 5.94992 6.08475 6.10022 6.26451 6.48189 6.55602 6.73030 6.74206 6.88830 7.05611 7.33937 7.37673 7.70940 8.07496 8.31800 8.47866 8.80060 9.38903 10.90248 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.003679 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.690633 B = 7609.475970 C = 9095.961729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.188 3.812 4 H 0.035 0.965 5 C -0.554 4.554 6 H 0.077 0.923 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.265 1.265 13 N -0.677 5.677 14 C 0.144 3.856 15 C 0.218 3.782 16 N -0.252 5.252 17 N -0.290 5.290 18 C 0.398 3.602 19 N -0.415 5.415 20 C 0.193 3.807 21 C -0.137 4.137 22 C -0.209 4.209 23 S 0.327 5.673 24 C -0.327 4.327 25 C 0.596 3.404 26 O -0.516 6.516 27 N -0.500 5.500 28 C 0.086 3.914 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.345 0.655 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.167 0.833 39 H 0.188 0.812 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.613 6.774 -5.096 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.079 3.921 4 H 0.053 0.947 5 C -0.593 4.593 6 H 0.095 0.905 7 C -0.128 4.128 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.190 1.190 13 N -0.309 5.309 14 C 0.012 3.988 15 C -0.049 4.049 16 N -0.089 5.089 17 N -0.136 5.136 18 C 0.045 3.955 19 N -0.106 5.106 20 C 0.079 3.921 21 C -0.168 4.168 22 C -0.347 4.347 23 S 0.595 5.405 24 C -0.449 4.449 25 C 0.388 3.612 26 O -0.392 6.392 27 N -0.230 5.230 28 C -0.055 4.055 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.163 0.837 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.185 0.815 39 H 0.206 0.794 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.053 7.313 -6.181 23.128 hybrid contribution 1.330 -0.916 1.729 2.366 sum -19.722 6.397 -4.451 21.206 Atomic orbital electron populations 1.21743 0.97616 0.99421 1.01234 1.21831 0.93746 0.99095 1.00817 1.19602 0.94815 0.90605 0.87068 0.94725 1.21710 0.90251 1.39851 1.07444 0.90494 1.25000 0.94744 0.95148 0.97870 1.69906 1.08969 1.44412 1.29573 0.86845 0.80507 0.79916 0.80858 1.20443 1.22527 1.18997 1.60866 1.58039 1.02451 1.09527 1.20321 1.01109 0.90492 0.86905 1.25234 0.76743 1.02303 1.00631 1.74386 1.23679 1.12745 0.98062 1.74762 0.93889 1.23291 1.21639 1.21335 0.90335 0.99770 0.84095 1.43468 1.06221 1.45328 1.15602 1.17877 0.82456 0.97963 0.93784 1.19613 0.99029 1.02982 0.95224 1.25252 0.97511 1.05766 1.06194 1.83056 1.02627 1.50560 1.04228 1.23820 0.98564 1.19166 1.03392 1.15525 0.82708 0.78848 0.84148 1.90914 1.29476 1.53206 1.65599 1.44129 1.01047 1.57196 1.20583 1.22015 1.05192 0.98539 0.79745 0.94091 0.92278 0.94707 0.92197 0.93353 0.92475 0.83689 0.89607 0.89659 0.81528 0.79431 0.90601 0.88673 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.74 37.16 0.36 -1.88 16 2 C -0.12 -2.27 5.11 -26.73 -0.14 -2.40 16 3 C 0.19 3.81 1.55 -68.87 -0.11 3.71 16 4 H 0.03 0.71 6.82 -51.93 -0.35 0.36 16 5 C -0.55 -14.01 8.89 -34.44 -0.31 -14.32 16 6 H 0.08 2.15 8.03 -52.49 -0.42 1.73 16 7 C 0.08 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 9 Si 0.89 20.33 24.41 -169.99 -4.15 16.19 16 10 H -0.28 -6.27 6.83 56.52 0.39 -5.89 16 11 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -5.64 6.53 56.52 0.37 -5.27 16 13 N -0.68 -11.92 5.75 -109.22 -0.63 -12.54 16 14 C 0.14 2.33 5.43 -4.97 -0.03 2.30 16 15 C 0.22 3.55 7.72 -154.19 -1.19 2.36 16 16 N -0.25 -4.53 12.19 32.95 0.40 -4.13 16 17 N -0.29 -4.90 12.09 30.19 0.36 -4.54 16 18 C 0.40 6.10 8.30 -319.77 -2.66 3.44 16 19 N -0.41 -6.27 3.03 -58.60 -0.18 -6.44 16 20 C 0.19 2.52 6.89 -83.77 -0.58 1.94 16 21 C -0.14 -1.50 9.66 -41.08 -0.40 -1.89 16 22 C -0.21 -1.66 10.86 28.93 0.31 -1.34 16 23 S 0.33 2.75 23.07 -107.50 -2.48 0.27 16 24 C -0.33 -4.03 6.46 -38.12 -0.25 -4.28 16 25 C 0.60 8.14 7.46 -14.88 -0.11 8.03 16 26 O -0.52 -7.60 16.62 5.08 0.08 -7.52 16 27 N -0.50 -6.65 3.05 -127.42 -0.39 -7.04 16 28 C 0.09 0.84 10.37 59.84 0.62 1.46 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.02 3.21 -51.93 -0.17 0.85 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 35 H 0.35 6.53 8.54 -39.30 -0.34 6.19 16 36 H 0.09 1.53 7.99 -51.93 -0.42 1.11 16 37 H 0.09 1.23 6.22 -51.93 -0.32 0.90 16 38 H 0.17 1.92 6.12 -52.49 -0.32 1.59 16 39 H 0.19 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.83 7.40 -51.93 -0.38 0.45 16 42 H 0.09 0.85 7.94 -51.93 -0.41 0.43 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -31.12 357.63 -10.20 -41.32 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.84 Total: 5.08 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -4.55 Total: -0.93 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.35 Total: -59.79 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.52 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.15 Total: 16.19 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.48 Total: 0.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.12 -10.20 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575932129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.296 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds