Wall clock time and date at job start Wed Apr 1 2020 04:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99938 * 2 1 4 4 H 1.48508 * 109.46851 * 274.98737 * 3 2 1 5 5 H 1.48502 * 109.47362 * 34.98743 * 3 2 1 6 6 H 1.48501 * 109.47298 * 154.99144 * 3 2 1 7 7 C 1.37878 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00095 * 189.58111 * 7 2 1 9 9 C 1.50694 * 120.00496 * 9.58348 * 7 2 1 10 10 C 1.53042 * 109.46419 * 185.44790 * 9 7 2 11 11 C 1.53191 * 109.31148 * 178.62755 * 10 9 7 12 12 N 1.46921 * 108.78091 * 54.63677 * 11 10 9 13 13 C 1.34767 * 120.63671 * 126.36474 * 12 11 10 14 14 O 1.21286 * 119.99905 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00510 * 180.02562 * 13 12 11 16 16 N 1.46507 * 109.47563 * 179.97438 * 15 13 12 17 17 N 1.40582 * 127.40011 * 270.02773 * 16 15 13 18 18 N 1.28890 * 106.88014 * 179.97438 * 17 16 15 19 19 N 1.28414 * 110.41886 * 359.74704 * 18 17 16 20 20 C 1.31731 * 110.47811 * 0.42241 * 19 18 17 21 21 C 1.47833 * 126.49057 * 179.85529 * 20 19 18 22 22 C 1.39713 * 122.87327 * 344.68662 * 21 20 19 23 23 C 1.33117 * 113.73480 * 179.97438 * 22 21 20 24 24 S 1.75729 * 109.79164 * 359.97438 * 23 22 21 25 25 C 1.34614 * 122.87741 * 164.39219 * 21 20 19 26 26 C 1.46932 * 118.73450 * 306.64522 * 12 11 10 27 27 C 1.52753 * 109.01141 * 53.30489 * 26 12 11 28 28 H 0.96996 * 120.00578 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.45938 * 305.42175 * 9 7 2 30 30 H 1.08996 * 109.49474 * 58.67764 * 10 9 7 31 31 H 1.08995 * 109.52372 * 298.59375 * 10 9 7 32 32 H 1.08997 * 109.58694 * 294.84126 * 11 10 9 33 33 H 1.09005 * 109.70240 * 174.49359 * 11 10 9 34 34 H 1.09007 * 109.47431 * 59.99976 * 15 13 12 35 35 H 1.09002 * 109.47340 * 299.99970 * 15 13 12 36 36 H 1.07993 * 123.13513 * 359.94382 * 22 21 20 37 37 H 1.08000 * 125.10487 * 179.97438 * 23 22 21 38 38 H 1.07997 * 124.74815 * 0.02562 * 25 21 20 39 39 H 1.08999 * 109.58567 * 173.14601 * 26 12 11 40 40 H 1.09000 * 109.58179 * 293.56199 * 26 12 11 41 41 H 1.09000 * 109.56945 * 185.55375 * 27 26 12 42 42 H 1.08996 * 109.38936 * 65.51847 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1072 -1.3949 5 1 1.5033 2.6200 0.8028 6 1 3.5954 1.4120 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0732 -1.2006 0.1562 9 6 1.2669 -2.4902 -0.2161 10 6 2.2329 -3.6632 -0.0345 11 6 1.4721 -4.9796 -0.2217 12 7 0.7939 -4.9528 -1.5247 13 6 0.9780 -5.9473 -2.4153 14 8 1.7090 -6.8764 -2.1443 15 6 0.2756 -5.9051 -3.7479 16 7 0.6381 -7.0905 -4.5289 17 7 1.7149 -7.2281 -5.4221 18 7 1.6637 -8.4288 -5.8879 19 7 0.6712 -9.0649 -5.3787 20 6 0.0069 -8.2913 -4.5448 21 6 -1.1949 -8.6632 -3.7684 22 6 -1.9624 -9.7950 -4.0546 23 6 -3.0034 -9.9564 -3.2408 24 16 -3.0445 -8.6538 -2.0619 25 6 -1.6402 -7.9435 -2.7216 26 6 -0.0841 -3.8179 -1.8408 27 6 0.6896 -2.5173 -1.6333 28 1 -0.4851 0.8400 -0.0004 29 1 0.4561 -2.5720 0.5078 30 1 2.6613 -3.6299 0.9672 31 1 3.0308 -3.5959 -0.7739 32 1 0.7338 -5.0911 0.5724 33 1 2.1710 -5.8156 -0.1907 34 1 0.5766 -5.0080 -4.2891 35 1 -0.8028 -5.8895 -3.5900 36 1 -1.7329 -10.4753 -4.8613 37 1 -3.7157 -10.7663 -3.2965 38 1 -1.1748 -7.0418 -2.3520 39 1 -0.4100 -3.8860 -2.8787 40 1 -0.9520 -3.8327 -1.1815 41 1 0.0198 -1.6682 -1.7695 42 1 1.5017 -2.4598 -2.3580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582850356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:46 Heat of formation + Delta-G solvation = 101.503129 kcal Electronic energy + Delta-G solvation = -28089.126279 eV Core-core repulsion = 24198.060438 eV Total energy + Delta-G solvation = -3891.065841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.16882 -41.43518 -39.27693 -38.63744 -36.22902 -35.41991 -33.43918 -33.28557 -31.98286 -30.64508 -30.27554 -27.98956 -26.28875 -24.94681 -24.32737 -23.97800 -23.36277 -21.76686 -20.61807 -20.08900 -19.00115 -18.96596 -18.45910 -18.20337 -17.33253 -16.99151 -16.84585 -16.57044 -16.36228 -15.22244 -15.06752 -14.92968 -14.85245 -14.55851 -14.38728 -14.35859 -14.30958 -13.93414 -13.72712 -13.44777 -13.30270 -13.26200 -13.03009 -12.81048 -12.54285 -12.40670 -12.21987 -12.18302 -11.99551 -11.91363 -11.72236 -11.52490 -11.17475 -10.94287 -10.79288 -10.40491 -10.00398 -9.74663 -9.41706 -8.13699 -6.19685 -0.70466 0.07493 0.42401 0.61497 0.87382 0.94267 1.18196 1.39133 1.43781 1.50771 1.72824 1.88662 2.43503 2.85304 3.00470 3.04958 3.17087 3.51134 3.64974 3.84174 4.00771 4.11883 4.19691 4.21170 4.27888 4.29886 4.40656 4.41092 4.52573 4.64221 4.77164 4.86332 4.91754 4.94559 5.13364 5.15714 5.19832 5.24806 5.33088 5.42049 5.64637 5.96960 6.03216 6.21054 6.38527 6.79263 6.89291 7.23348 7.46763 8.93503 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.002813 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.964595 B = 9952.723562 C =10926.079035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.041 0.959 9 C 0.046 3.954 10 C -0.115 4.115 11 C 0.119 3.881 12 N -0.588 5.588 13 C 0.498 3.502 14 O -0.573 6.573 15 C 0.092 3.908 16 N -0.359 5.359 17 N -0.094 5.094 18 N -0.058 5.058 19 N -0.345 5.345 20 C 0.325 3.675 21 C -0.072 4.072 22 C -0.113 4.113 23 C -0.215 4.215 24 S 0.279 5.721 25 C -0.244 4.244 26 C 0.104 3.896 27 C -0.114 4.114 28 H 0.262 0.738 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.164 0.836 35 H 0.173 0.827 36 H 0.159 0.841 37 H 0.207 0.793 38 H 0.164 0.836 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.438 -15.698 -5.100 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.153 4.153 11 C -0.003 4.003 12 N -0.319 5.319 13 C 0.284 3.716 14 O -0.453 6.453 15 C -0.033 4.033 16 N -0.154 5.154 17 N -0.079 5.079 18 N -0.053 5.053 19 N -0.198 5.198 20 C 0.049 3.951 21 C -0.092 4.092 22 C -0.142 4.142 23 C -0.351 4.351 24 S 0.546 5.454 25 C -0.385 4.385 26 C -0.017 4.017 27 C -0.152 4.152 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.176 0.824 37 H 0.224 0.776 38 H 0.181 0.819 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.099 -15.933 -4.684 21.152 hybrid contribution 1.684 1.582 -0.441 2.352 sum -11.415 -14.351 -5.125 19.040 Atomic orbital electron populations 1.69993 1.06571 1.27234 1.50779 1.25485 0.95525 1.01433 0.94868 0.85879 0.78939 0.80787 0.78035 1.20302 1.20972 1.20184 1.21489 0.93889 0.92806 1.49300 0.94018 1.18604 0.93787 0.91443 0.93440 1.21864 0.98341 0.94478 1.00634 1.21661 0.96795 0.98174 0.83684 1.48215 1.46177 1.21323 1.16232 1.20691 0.82384 0.82532 0.85989 1.90765 1.39898 1.36039 1.78583 1.22446 1.04071 0.87169 0.89635 1.51241 1.20255 1.12192 1.31754 1.82470 1.05195 1.14408 1.05867 1.77885 1.12018 0.98684 1.16690 1.74677 1.05182 1.26369 1.13581 1.23487 0.94786 0.82244 0.94599 1.16683 0.93974 1.00283 0.98261 1.20156 0.94768 0.96675 1.02568 1.26136 1.03802 1.05276 0.99848 1.83199 1.17536 1.15501 1.29214 1.25597 1.05203 1.06428 1.01286 1.22086 0.92529 0.84316 1.02767 1.21679 0.98981 0.96029 0.98557 0.92867 0.96616 0.91949 0.94282 0.89833 0.90577 0.81893 0.81018 0.82393 0.77591 0.81874 0.87298 0.89308 0.91406 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.13 12.16 21.45 0.26 -46.87 16 2 C 0.03 1.37 5.19 84.65 0.44 1.81 16 3 Si 0.94 41.14 29.55 68.60 2.03 43.17 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -27.28 8.48 25.60 0.22 -27.06 16 8 H 0.04 2.17 7.77 -2.91 -0.02 2.15 16 9 C 0.05 1.97 1.93 -11.51 -0.02 1.95 16 10 C -0.11 -4.28 5.30 30.67 0.16 -4.12 16 11 C 0.12 3.67 6.43 86.36 0.56 4.23 16 12 N -0.59 -16.18 2.98 -819.76 -2.44 -18.62 16 13 C 0.50 13.97 6.51 87.66 0.57 14.54 16 14 O -0.57 -21.18 15.84 -3.05 -0.05 -21.23 16 15 C 0.09 1.92 4.51 85.63 0.39 2.30 16 16 N -0.36 -10.00 3.19 -343.70 -1.10 -11.09 16 17 N -0.09 -3.15 13.92 37.02 0.52 -2.64 16 18 N -0.06 -2.01 13.37 37.02 0.50 -1.52 16 19 N -0.35 -11.06 12.14 -51.70 -0.63 -11.69 16 20 C 0.32 8.96 7.88 136.69 1.08 10.04 16 21 C -0.07 -1.48 5.78 -21.21 -0.12 -1.61 16 22 C -0.11 -1.77 10.06 21.48 0.22 -1.56 16 23 C -0.22 -2.08 11.20 66.67 0.75 -1.33 16 24 S 0.28 2.85 23.09 -56.49 -1.30 1.54 16 25 C -0.24 -4.06 9.58 66.99 0.64 -3.42 16 26 C 0.10 2.62 6.31 86.21 0.54 3.16 16 27 C -0.11 -4.20 5.19 30.53 0.16 -4.05 16 28 H 0.26 13.06 8.31 -92.71 -0.77 12.29 16 29 H 0.02 0.74 8.09 -2.38 -0.02 0.72 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.08 2.46 7.00 -2.38 -0.02 2.44 16 34 H 0.16 2.74 7.68 -2.38 -0.02 2.72 16 35 H 0.17 2.20 5.74 -2.39 -0.01 2.18 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.21 0.61 8.06 -2.91 -0.02 0.58 16 38 H 0.16 2.73 4.45 -2.91 -0.01 2.71 16 39 H 0.11 1.81 5.93 -2.39 -0.01 1.80 16 40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.84 6.87 -2.39 -0.02 2.82 16 42 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -70.52 360.60 4.42 -66.09 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.07 Total: 7.98 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 5.57 Total: -5.12 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -2.89 Total: -92.43 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.30 Total: 1.54 kcal Total: -70.52 4.42 -66.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582850356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.597 kcal (2) G-P(sol) polarization free energy of solvation -70.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds