Wall clock time and date at job start Wed Apr 1 2020 04:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47287 * 2 1 4 4 N 1.46505 * 109.47263 * 119.99520 * 2 1 3 5 5 C 1.46499 * 120.00237 * 300.00570 * 4 2 1 6 6 C 1.50696 * 109.46959 * 274.99766 * 5 4 2 7 7 H 1.08003 * 120.00115 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99971 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00043 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00061 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47213 * 89.99626 * 10 8 6 12 12 H 1.48493 * 109.46835 * 209.99711 * 10 8 6 13 13 H 1.48501 * 109.46742 * 329.99681 * 10 8 6 14 14 S 1.65606 * 119.99870 * 119.99923 * 4 2 1 15 15 O 1.42105 * 104.27565 * 333.93387 * 14 4 2 16 16 O 1.42095 * 104.27795 * 206.07679 * 14 4 2 17 17 C 1.81401 * 104.44734 * 90.00101 * 14 4 2 18 18 C 1.52994 * 109.47083 * 179.97438 * 17 14 4 19 19 C 1.50701 * 109.47170 * 180.02562 * 18 17 14 20 20 C 1.38425 * 120.02136 * 90.00332 * 19 18 17 21 21 F 1.35101 * 120.01402 * 359.70506 * 20 19 18 22 22 C 1.38476 * 119.97328 * 179.97438 * 20 19 18 23 23 C 1.38207 * 120.02410 * 0.02562 * 22 20 19 24 24 C 1.38207 * 120.05360 * 359.97438 * 23 22 20 25 25 C 1.38412 * 120.02814 * 269.97965 * 19 18 17 26 26 F 1.35096 * 120.01191 * 0.02562 * 25 19 18 27 27 H 1.09005 * 109.47288 * 299.99783 * 1 2 3 28 28 H 1.08996 * 109.47110 * 60.00658 * 1 2 3 29 29 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47351 * 239.99732 * 2 1 3 31 31 H 1.08995 * 109.47363 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46843 * 300.00042 * 3 2 1 33 33 H 1.09005 * 109.47035 * 59.99165 * 3 2 1 34 34 H 1.09000 * 109.47118 * 34.99382 * 5 4 2 35 35 H 1.09003 * 109.47235 * 154.99641 * 5 4 2 36 36 H 0.96998 * 120.00116 * 180.02562 * 9 8 6 37 37 H 1.09008 * 109.46697 * 60.00271 * 17 14 4 38 38 H 1.08994 * 109.47368 * 300.00822 * 17 14 4 39 39 H 1.09008 * 109.46866 * 60.00700 * 18 17 14 40 40 H 1.09006 * 109.47655 * 300.00561 * 18 17 14 41 41 H 1.08001 * 119.98752 * 179.97438 * 22 20 19 42 42 H 1.08000 * 119.97200 * 180.02562 * 23 22 20 43 43 H 1.07995 * 119.99247 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.6644 -0.1900 2.5268 6 6 2.6337 0.8906 2.9312 7 1 3.4337 1.1758 2.2640 8 6 2.4999 1.5146 4.1534 9 7 1.5261 1.1670 4.9661 10 14 3.7011 2.8547 4.6544 11 1 3.1876 4.1733 4.2042 12 1 3.8492 2.8594 6.1319 13 1 5.0212 2.5965 4.0253 14 16 2.9705 -2.0370 1.0444 15 8 2.6122 -2.5787 -0.2196 16 8 2.7433 -2.7640 2.2439 17 6 4.6650 -1.3908 1.0028 18 6 5.6506 -2.5526 0.8636 19 6 7.0583 -2.0158 0.8297 20 6 7.7682 -1.8588 2.0076 21 9 7.1972 -2.1810 3.1888 22 6 9.0619 -1.3659 1.9752 23 6 9.6441 -1.0304 0.7675 24 6 8.9363 -1.1868 -0.4092 25 6 7.6426 -1.6800 -0.3793 26 9 6.9509 -1.8327 -1.5296 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.6539 0.2181 2.5045 35 1 1.7104 -1.0073 3.2466 36 1 1.4317 1.6062 5.8258 37 1 4.8701 -0.8494 1.9264 38 1 4.7758 -0.7161 0.1540 39 1 5.4456 -3.0943 -0.0599 40 1 5.5396 -3.2271 1.7128 41 1 9.6159 -1.2429 2.8941 42 1 10.6533 -0.6465 0.7432 43 1 9.3920 -0.9240 -1.3524 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599230294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:39 Heat of formation + Delta-G solvation = -165.125675 kcal Electronic energy + Delta-G solvation = -29726.345537 eV Core-core repulsion = 25340.735866 eV Total energy + Delta-G solvation = -4385.609671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.07907 -50.06582 -39.94278 -38.49396 -38.18515 -37.01859 -35.65041 -34.77835 -32.24628 -31.29880 -30.83991 -28.84721 -27.92027 -25.81117 -24.69514 -23.90401 -22.67602 -21.70533 -19.69827 -19.20794 -18.78940 -18.52770 -18.47981 -17.71070 -17.21882 -16.93412 -16.73810 -16.63419 -16.46318 -16.35688 -15.57107 -15.47263 -15.10884 -15.01328 -14.86451 -14.59911 -14.13716 -14.00721 -13.77389 -13.73479 -13.54078 -13.22696 -13.05002 -12.99475 -12.94015 -12.92905 -12.69360 -12.64634 -12.58616 -12.41181 -12.34712 -12.18136 -12.07149 -11.73798 -11.46624 -11.32690 -10.54285 -9.99129 -9.79184 -9.67676 -8.14463 -6.26244 -0.71088 -0.07448 -0.06634 1.41121 1.42373 1.51266 1.73699 2.32011 2.42043 2.82106 2.84610 3.16096 3.17309 3.33729 3.36221 3.50998 3.55720 3.86322 3.90259 3.93539 4.17961 4.25096 4.34426 4.36763 4.43695 4.56994 4.72313 4.80169 4.82239 4.92104 4.93289 5.00789 5.04098 5.10675 5.17455 5.17570 5.27582 5.43486 5.57136 5.72441 5.74735 5.83597 6.01464 6.13966 6.84893 7.42344 8.93844 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.004884 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.067005 B = 5732.204250 C = 7217.804522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 C -0.153 4.153 4 N -0.985 5.985 5 C 0.259 3.741 6 C -0.534 4.534 7 H 0.076 0.924 8 C 0.011 3.989 9 N -0.929 5.929 10 Si 0.951 3.049 11 H -0.272 1.272 12 H -0.289 1.289 13 H -0.262 1.262 14 S 2.611 3.389 15 O -0.983 6.983 16 O -0.995 6.995 17 C -0.607 4.607 18 C -0.078 4.078 19 C -0.163 4.163 20 C 0.105 3.895 21 F -0.143 7.143 22 C -0.159 4.159 23 C -0.050 4.050 24 C -0.153 4.153 25 C 0.115 3.885 26 F -0.135 7.135 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.134 0.866 38 H 0.150 0.850 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.164 0.836 42 H 0.187 0.813 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.684 -1.461 -12.618 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.031 3.969 3 C -0.212 4.212 4 N -0.823 5.823 5 C 0.136 3.864 6 C -0.573 4.573 7 H 0.094 0.906 8 C -0.189 4.189 9 N -0.569 5.569 10 Si 0.777 3.223 11 H -0.197 1.197 12 H -0.215 1.215 13 H -0.187 1.187 14 S 2.708 3.292 15 O -0.973 6.973 16 O -0.986 6.986 17 C -0.738 4.738 18 C -0.116 4.116 19 C -0.166 4.166 20 C 0.086 3.914 21 F -0.122 7.122 22 C -0.177 4.177 23 C -0.067 4.067 24 C -0.171 4.171 25 C 0.096 3.904 26 F -0.114 7.114 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.153 0.847 38 H 0.168 0.832 39 H 0.121 0.879 40 H 0.106 0.894 41 H 0.182 0.818 42 H 0.204 0.796 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 16.189 -2.345 -12.494 20.584 hybrid contribution 0.023 0.934 1.083 1.430 sum 16.212 -1.412 -11.411 19.875 Atomic orbital electron populations 1.22072 0.94800 1.01648 1.02756 1.21004 0.95510 0.94347 0.86023 1.22160 1.01048 0.95330 1.02642 1.57358 1.64303 1.47416 1.13239 1.18723 0.96473 0.93855 0.77384 1.21899 1.13910 1.19643 1.01892 0.90568 1.25769 0.97139 0.99420 0.96535 1.70071 1.33061 1.43457 1.10275 0.85652 0.79788 0.79696 0.77196 1.19700 1.21541 1.18654 1.04604 0.77561 0.74324 0.72760 1.93498 1.82444 1.77617 1.43751 1.93517 1.84935 1.71333 1.48816 1.30549 1.20574 1.09806 1.12862 1.20216 0.90474 0.95691 1.05243 1.19651 0.96930 1.07315 0.92681 1.17685 0.93232 1.00666 0.79866 1.91527 1.85267 1.90378 1.45026 1.21610 0.92674 1.01234 1.02200 1.21367 1.01433 0.94828 0.89103 1.21616 0.91782 1.01348 1.02366 1.17461 0.91727 1.01049 0.80190 1.91513 1.79502 1.93317 1.47060 0.93373 0.89052 0.93484 0.88258 0.92768 0.90129 0.92502 0.95523 0.96600 0.92738 0.84745 0.83184 0.87877 0.89365 0.81794 0.79551 0.80922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.16 71.98 0.66 -4.32 16 2 C 0.14 4.70 3.19 44.99 0.14 4.84 16 3 C -0.15 -4.85 8.21 71.98 0.59 -4.26 16 4 N -0.99 -40.98 2.66 -497.42 -1.32 -42.30 16 5 C 0.26 13.13 4.98 85.63 0.43 13.55 16 6 C -0.53 -27.42 7.53 25.60 0.19 -27.22 16 7 H 0.08 3.63 7.08 -2.91 -0.02 3.61 16 8 C 0.01 0.57 5.46 84.65 0.46 1.03 16 9 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 10 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 14 S 2.61 104.44 5.41 -56.49 -0.31 104.14 16 15 O -0.98 -39.56 16.57 -127.65 -2.12 -41.68 16 16 O -1.00 -48.27 16.53 -127.65 -2.11 -50.38 16 17 C -0.61 -19.86 6.16 71.98 0.44 -19.42 16 18 C -0.08 -2.29 5.00 29.85 0.15 -2.14 16 19 C -0.16 -4.24 5.15 -19.78 -0.10 -4.34 16 20 C 0.10 2.65 7.24 22.37 0.16 2.82 16 21 F -0.14 -4.42 16.48 44.97 0.74 -3.68 16 22 C -0.16 -2.69 10.03 22.32 0.22 -2.47 16 23 C -0.05 -0.57 10.04 22.25 0.22 -0.35 16 24 C -0.15 -2.17 10.03 22.32 0.22 -1.95 16 25 C 0.12 2.51 7.24 22.37 0.16 2.67 16 26 F -0.14 -3.20 16.48 44.97 0.74 -2.46 16 27 H 0.05 1.74 6.69 -2.38 -0.02 1.72 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 3.07 6.87 -2.39 -0.02 3.06 16 31 H 0.05 1.64 7.93 -2.39 -0.02 1.62 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 2.15 6.65 -2.38 -0.02 2.13 16 34 H 0.03 1.43 6.45 -2.39 -0.02 1.41 16 35 H 0.02 0.92 6.82 -2.39 -0.02 0.91 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.13 4.78 8.14 -2.39 -0.02 4.76 16 38 H 0.15 4.16 8.14 -2.39 -0.02 4.14 16 39 H 0.10 2.74 7.64 -2.38 -0.02 2.72 16 40 H 0.09 2.67 7.64 -2.38 -0.02 2.65 16 41 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 43 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -71.73 374.63 2.93 -68.80 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 1.03 Total: 18.87 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 3.96 Total: -41.55 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -1.04 Total: -96.17 kcal Atomic # 8 Polarization: -87.83 SS G_CDS: -4.23 Total: -92.06 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 1.48 Total: -6.14 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 104.44 SS G_CDS: -0.31 Total: 104.14 kcal Total: -71.73 2.93 -68.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599230294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.327 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds