Wall clock time and date at job start Wed Apr 1 2020 04:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00057 * 2 1 4 4 H 1.09004 * 110.89123 * 333.88678 * 3 2 1 5 5 C 1.55135 * 110.90533 * 97.97967 * 3 2 1 6 6 N 1.47419 * 104.72201 * 155.27810 * 5 3 2 7 7 S 1.65607 * 125.64857 * 155.81675 * 6 5 3 8 8 O 1.42102 * 104.27726 * 153.61888 * 7 6 5 9 9 O 1.42101 * 104.27469 * 25.76085 * 7 6 5 10 10 C 1.81392 * 104.45073 * 269.69104 * 7 6 5 11 11 C 1.52999 * 109.47387 * 172.07245 * 10 7 6 12 12 C 1.50700 * 115.54871 * 294.46238 * 11 10 7 13 13 H 1.07997 * 120.00258 * 99.70626 * 12 11 10 14 14 C 1.37875 * 119.99590 * 279.69976 * 12 11 10 15 15 N 1.31518 * 120.00257 * 6.67371 * 14 12 11 16 16 Si 1.86803 * 119.99950 * 186.67216 * 14 12 11 17 17 H 1.48497 * 109.47467 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47335 * 300.00289 * 16 14 12 19 19 H 1.48507 * 109.46908 * 60.00289 * 16 14 12 20 20 C 1.53000 * 117.51670 * 80.15715 * 11 10 7 21 21 C 1.53000 * 117.50081 * 148.78744 * 11 10 7 22 22 C 1.47027 * 108.70581 * 335.55069 * 6 5 3 23 23 C 1.52993 * 109.88357 * 241.87202 * 22 6 5 24 24 C 1.50700 * 109.88185 * 120.85954 * 22 6 5 25 25 O 1.20825 * 119.99810 * 144.99751 * 24 22 6 26 26 O 1.34225 * 120.00202 * 325.00496 * 24 22 6 27 27 C 1.54321 * 107.26844 * 1.28883 * 22 6 5 28 28 H 1.08997 * 109.47465 * 59.99905 * 1 2 3 29 29 H 1.09006 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46882 * 299.99709 * 1 2 3 31 31 H 1.08998 * 110.49689 * 36.42971 * 5 3 2 32 32 H 1.09006 * 110.34049 * 274.03827 * 5 3 2 33 33 H 1.09002 * 109.47247 * 52.07177 * 10 7 6 34 34 H 1.09000 * 109.47398 * 292.07572 * 10 7 6 35 35 H 0.96996 * 119.99907 * 354.96794 * 15 14 12 36 36 H 1.09001 * 117.49877 * 214.97258 * 20 11 10 37 37 H 1.09006 * 117.49965 * 359.97438 * 20 11 10 38 38 H 1.09004 * 117.49939 * 359.97438 * 21 11 10 39 39 H 1.08998 * 117.49878 * 144.97583 * 21 11 10 40 40 H 1.09001 * 109.47317 * 59.99989 * 23 22 6 41 41 H 1.08996 * 109.47219 * 179.97438 * 23 22 6 42 42 H 1.09004 * 109.47369 * 299.99850 * 23 22 6 43 43 H 0.96703 * 117.00222 * 179.97438 * 26 24 22 44 44 H 1.08997 * 110.71715 * 140.55256 * 27 22 6 45 45 H 1.08994 * 110.72329 * 263.65324 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3329 2.0325 -0.4482 5 6 2.4191 1.7293 1.4352 6 7 3.4909 2.7228 1.2413 7 16 3.9168 3.9058 2.3192 8 8 5.2841 4.1655 2.0323 9 8 3.5183 3.3895 3.5817 10 6 2.8887 5.3280 1.8599 11 6 3.0458 6.4308 2.9088 12 6 2.5263 6.0986 4.2839 13 1 3.2104 5.7850 5.0584 14 6 1.1775 6.1952 4.5530 15 7 0.3293 6.4488 3.5805 16 14 0.5548 5.9658 6.2992 17 1 -0.9222 6.1182 6.3222 18 1 0.9206 4.6097 6.7811 19 1 1.1711 6.9881 7.1828 20 6 4.2871 7.3206 2.8185 21 6 2.9155 7.8798 2.4353 22 6 4.1233 2.4855 -0.0646 23 6 5.5992 2.1320 0.1286 24 6 3.9997 3.7164 -0.9251 25 8 4.8895 4.0128 -1.6869 26 8 2.9012 4.4836 -0.8453 27 6 3.3824 1.3034 -0.7243 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.7933 0.8718 1.9944 32 1 1.5726 2.1806 1.9527 33 1 1.8443 5.0203 1.8098 34 1 3.2035 5.7047 0.8867 35 1 0.6578 6.6401 2.6881 36 1 4.7280 7.6658 3.7537 37 1 4.9925 7.1201 2.0120 38 1 2.7184 8.0476 1.3765 39 1 2.4537 8.5928 3.1183 40 1 5.6805 1.2309 0.7365 41 1 6.0611 1.9571 -0.8431 42 1 6.1076 2.9556 0.6299 43 1 2.8675 5.2631 -1.4166 44 1 3.2547 1.4764 -1.7928 45 1 3.9135 0.3682 -0.5472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600661707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:24 Heat of formation + Delta-G solvation = -169.713740 kcal Electronic energy + Delta-G solvation = -31676.227575 eV Core-core repulsion = 27401.506466 eV Total energy + Delta-G solvation = -4274.721109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96576 -38.99167 -37.17324 -36.93694 -36.47189 -36.29923 -35.26150 -32.03311 -31.44885 -30.55896 -28.32116 -26.68129 -26.13843 -24.98128 -24.15334 -21.85093 -21.48725 -20.76819 -19.82649 -18.99270 -17.96499 -17.62535 -17.20539 -16.86691 -16.08851 -15.83836 -15.50754 -15.35795 -14.99755 -14.79555 -14.19397 -14.08643 -13.95221 -13.75259 -13.39181 -13.23347 -13.14863 -12.72170 -12.59346 -12.55282 -12.10905 -11.94480 -11.83947 -11.62503 -11.53344 -11.41199 -11.25307 -11.25049 -11.10052 -10.80421 -10.78519 -10.73231 -10.67082 -10.42129 -10.11086 -9.86392 -9.73529 -9.10969 -8.71978 -8.53195 -8.32801 -6.46855 -4.23857 0.77316 1.91098 2.77992 3.00357 3.43056 3.46381 3.51120 3.63639 4.12774 4.22100 4.41004 4.46686 4.62877 4.78321 4.85377 4.89497 4.97707 5.10074 5.17421 5.18656 5.23164 5.38079 5.46507 5.48453 5.53488 5.57156 5.67627 5.73863 5.79358 5.82996 5.98181 6.05111 6.13551 6.27706 6.33464 6.35524 6.42974 6.46355 6.70014 6.95021 6.97398 7.10222 7.71545 8.01077 8.35478 8.75465 9.52617 10.92424 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.005265 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.234291 B = 5317.111014 C = 6445.771803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.375 6.375 3 C 0.076 3.924 4 H 0.088 0.912 5 C 0.104 3.896 6 N -1.001 6.001 7 S 2.613 3.387 8 O -0.967 6.967 9 O -0.926 6.926 10 C -0.555 4.555 11 C 0.020 3.980 12 C -0.579 4.579 13 H 0.063 0.937 14 C 0.037 3.963 15 N -0.901 5.901 16 Si 1.062 2.938 17 H -0.282 1.282 18 H -0.281 1.281 19 H -0.286 1.286 20 C -0.200 4.200 21 C -0.161 4.161 22 C 0.197 3.803 23 C -0.169 4.169 24 C 0.464 3.536 25 O -0.498 6.498 26 O -0.505 6.505 27 C -0.111 4.111 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.274 0.726 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.411 0.589 44 H 0.087 0.913 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 -9.827 -11.137 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.017 3.983 4 H 0.106 0.894 5 C -0.022 4.022 6 N -0.837 5.837 7 S 2.712 3.288 8 O -0.958 6.958 9 O -0.916 6.916 10 C -0.689 4.689 11 C 0.018 3.982 12 C -0.616 4.616 13 H 0.082 0.918 14 C -0.170 4.170 15 N -0.535 5.535 16 Si 0.889 3.111 17 H -0.207 1.207 18 H -0.207 1.207 19 H -0.212 1.212 20 C -0.238 4.238 21 C -0.200 4.200 22 C 0.107 3.893 23 C -0.228 4.228 24 C 0.303 3.697 25 O -0.383 6.383 26 O -0.318 6.318 27 C -0.149 4.149 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.270 0.730 44 H 0.106 0.894 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.857 -10.424 -9.434 14.085 hybrid contribution 0.607 1.285 -1.908 2.379 sum 1.464 -9.139 -11.342 14.640 Atomic orbital electron populations 1.22880 0.80428 1.02978 1.00625 1.87876 1.20203 1.26355 1.94801 1.23391 0.94437 0.85428 0.95089 0.89409 1.22429 0.90087 0.92421 0.97213 1.59226 1.46915 1.47445 1.30154 1.05205 0.75344 0.75033 0.73179 1.93471 1.31843 1.85664 1.84810 1.93581 1.83644 1.77074 1.37285 1.30128 1.15339 1.16470 1.06920 1.18652 0.98293 0.87075 0.94195 1.21373 0.95787 1.50934 0.93555 0.91841 1.25789 0.92964 0.92977 1.05224 1.70778 1.37127 1.42759 1.02802 0.83647 0.76097 0.77158 0.74169 1.20721 1.20719 1.21190 1.23105 0.90977 1.07609 1.02088 1.22787 0.99222 0.98964 0.99061 1.20484 0.96673 0.89715 0.82428 1.22472 0.91295 1.04934 1.04053 1.24074 0.79097 0.84501 0.81990 1.90717 1.39927 1.70236 1.37454 1.84675 1.42748 1.40065 1.64265 1.22764 0.94979 0.97382 0.99785 0.93810 0.89397 0.93275 0.89828 0.89510 0.85143 0.87811 0.91517 0.89132 0.90536 0.91220 0.89253 0.90322 0.90280 0.87936 0.72968 0.89400 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.37 -4.12 10.51 -35.23 -0.37 -4.49 16 3 C 0.08 0.86 3.56 -24.46 -0.09 0.77 16 4 H 0.09 0.92 7.83 -51.93 -0.41 0.52 16 5 C 0.10 1.45 6.63 -2.41 -0.02 1.44 16 6 N -1.00 -15.92 2.82 -98.75 -0.28 -16.19 16 7 S 2.61 53.55 5.23 -107.50 -0.56 52.98 16 8 O -0.97 -20.72 14.98 -57.54 -0.86 -21.58 16 9 O -0.93 -22.30 16.55 -57.54 -0.95 -23.26 16 10 C -0.56 -11.42 4.96 37.16 0.18 -11.24 16 11 C 0.02 0.48 0.84 -155.66 -0.13 0.35 16 12 C -0.58 -15.73 7.60 -34.44 -0.26 -15.99 16 13 H 0.06 1.79 7.82 -52.49 -0.41 1.38 16 14 C 0.04 1.01 5.42 -17.82 -0.10 0.91 16 15 N -0.90 -25.06 13.61 55.43 0.75 -24.30 16 16 Si 1.06 24.78 29.91 -169.99 -5.08 19.69 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 20 C -0.20 -4.34 9.96 -26.73 -0.27 -4.60 16 21 C -0.16 -3.51 9.07 -26.73 -0.24 -3.75 16 22 C 0.20 2.70 0.83 -132.00 -0.11 2.60 16 23 C -0.17 -2.30 7.88 37.15 0.29 -2.01 16 24 C 0.46 6.56 6.71 36.01 0.24 6.80 16 25 O -0.50 -7.94 16.86 -18.75 -0.32 -8.26 16 26 O -0.51 -6.12 10.17 -39.24 -0.40 -6.52 16 27 C -0.11 -1.17 5.75 -24.90 -0.14 -1.32 16 28 H 0.04 0.33 8.12 -51.93 -0.42 -0.10 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.13 2.75 7.52 -51.92 -0.39 2.36 16 34 H 0.10 1.83 6.06 -51.92 -0.31 1.52 16 35 H 0.27 7.41 6.04 -40.82 -0.25 7.16 16 36 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 40 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 41 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 42 H 0.10 1.69 5.58 -51.93 -0.29 1.40 16 43 H 0.41 3.31 9.10 45.56 0.41 3.72 16 44 H 0.09 0.80 7.83 -51.93 -0.41 0.39 16 45 H 0.11 1.00 7.84 -51.93 -0.41 0.59 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -34.37 376.86 -7.82 -42.19 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.89 Total: 8.77 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 0.46 Total: -24.71 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.48 Total: -40.50 kcal Atomic # 8 Polarization: -61.20 SS G_CDS: -2.90 Total: -64.10 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.69 kcal Atomic # 16 Polarization: 53.55 SS G_CDS: -0.56 Total: 52.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.37 -7.82 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600661707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.529 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds