Wall clock time and date at job start Wed Apr 1 2020 04:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00057 * 2 1 4 4 H 1.09004 * 110.89123 * 333.88678 * 3 2 1 5 5 C 1.55135 * 110.90533 * 97.97967 * 3 2 1 6 6 N 1.47419 * 104.72201 * 155.27810 * 5 3 2 7 7 S 1.65607 * 125.64857 * 155.81675 * 6 5 3 8 8 O 1.42102 * 104.27726 * 153.61888 * 7 6 5 9 9 O 1.42101 * 104.27469 * 25.76085 * 7 6 5 10 10 C 1.81392 * 104.45073 * 269.69104 * 7 6 5 11 11 C 1.52999 * 109.47387 * 172.07245 * 10 7 6 12 12 C 1.50700 * 115.54871 * 294.46238 * 11 10 7 13 13 H 1.07997 * 120.00258 * 99.70626 * 12 11 10 14 14 C 1.37875 * 119.99590 * 279.69976 * 12 11 10 15 15 N 1.31518 * 120.00257 * 6.67371 * 14 12 11 16 16 Si 1.86803 * 119.99950 * 186.67216 * 14 12 11 17 17 H 1.48497 * 109.47467 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47335 * 300.00289 * 16 14 12 19 19 H 1.48507 * 109.46908 * 60.00289 * 16 14 12 20 20 C 1.53000 * 117.51670 * 80.15715 * 11 10 7 21 21 C 1.53000 * 117.50081 * 148.78744 * 11 10 7 22 22 C 1.47027 * 108.70581 * 335.55069 * 6 5 3 23 23 C 1.52993 * 109.88357 * 241.87202 * 22 6 5 24 24 C 1.50700 * 109.88185 * 120.85954 * 22 6 5 25 25 O 1.20825 * 119.99810 * 144.99751 * 24 22 6 26 26 O 1.34225 * 120.00202 * 325.00496 * 24 22 6 27 27 C 1.54321 * 107.26844 * 1.28883 * 22 6 5 28 28 H 1.08997 * 109.47465 * 59.99905 * 1 2 3 29 29 H 1.09006 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46882 * 299.99709 * 1 2 3 31 31 H 1.08998 * 110.49689 * 36.42971 * 5 3 2 32 32 H 1.09006 * 110.34049 * 274.03827 * 5 3 2 33 33 H 1.09002 * 109.47247 * 52.07177 * 10 7 6 34 34 H 1.09000 * 109.47398 * 292.07572 * 10 7 6 35 35 H 0.96996 * 119.99907 * 354.96794 * 15 14 12 36 36 H 1.09001 * 117.49877 * 214.97258 * 20 11 10 37 37 H 1.09006 * 117.49965 * 359.97438 * 20 11 10 38 38 H 1.09004 * 117.49939 * 359.97438 * 21 11 10 39 39 H 1.08998 * 117.49878 * 144.97583 * 21 11 10 40 40 H 1.09001 * 109.47317 * 59.99989 * 23 22 6 41 41 H 1.08996 * 109.47219 * 179.97438 * 23 22 6 42 42 H 1.09004 * 109.47369 * 299.99850 * 23 22 6 43 43 H 0.96703 * 117.00222 * 179.97438 * 26 24 22 44 44 H 1.08997 * 110.71715 * 140.55256 * 27 22 6 45 45 H 1.08994 * 110.72329 * 263.65324 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3329 2.0325 -0.4482 5 6 2.4191 1.7293 1.4352 6 7 3.4909 2.7228 1.2413 7 16 3.9168 3.9058 2.3192 8 8 5.2841 4.1655 2.0323 9 8 3.5183 3.3895 3.5817 10 6 2.8887 5.3280 1.8599 11 6 3.0458 6.4308 2.9088 12 6 2.5263 6.0986 4.2839 13 1 3.2104 5.7850 5.0584 14 6 1.1775 6.1952 4.5530 15 7 0.3293 6.4488 3.5805 16 14 0.5548 5.9658 6.2992 17 1 -0.9222 6.1182 6.3222 18 1 0.9206 4.6097 6.7811 19 1 1.1711 6.9881 7.1828 20 6 4.2871 7.3206 2.8185 21 6 2.9155 7.8798 2.4353 22 6 4.1233 2.4855 -0.0646 23 6 5.5992 2.1320 0.1286 24 6 3.9997 3.7164 -0.9251 25 8 4.8895 4.0128 -1.6869 26 8 2.9012 4.4836 -0.8453 27 6 3.3824 1.3034 -0.7243 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.7933 0.8718 1.9944 32 1 1.5726 2.1806 1.9527 33 1 1.8443 5.0203 1.8098 34 1 3.2035 5.7047 0.8867 35 1 0.6578 6.6401 2.6881 36 1 4.7280 7.6658 3.7537 37 1 4.9925 7.1201 2.0120 38 1 2.7184 8.0476 1.3765 39 1 2.4537 8.5928 3.1183 40 1 5.6805 1.2309 0.7365 41 1 6.0611 1.9571 -0.8431 42 1 6.1076 2.9556 0.6299 43 1 2.8675 5.2631 -1.4166 44 1 3.2547 1.4764 -1.7928 45 1 3.9135 0.3682 -0.5472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600661707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:23 Heat of formation + Delta-G solvation = -195.089054 kcal Electronic energy + Delta-G solvation = -31677.327931 eV Core-core repulsion = 27401.506466 eV Total energy + Delta-G solvation = -4275.821465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03023 -39.97362 -38.93768 -38.23270 -37.82836 -37.35909 -36.97126 -34.06319 -32.56540 -31.54361 -29.99724 -27.44716 -27.19085 -26.98848 -25.20319 -23.23064 -22.87283 -21.97113 -21.55657 -20.25038 -19.34492 -18.93611 -18.65168 -18.23552 -17.21946 -17.15096 -16.86102 -16.51085 -16.29136 -15.88438 -15.65664 -15.64129 -15.30975 -15.09643 -14.84042 -14.57715 -14.40469 -14.08757 -13.83784 -13.73222 -13.63543 -13.19774 -13.09975 -13.05759 -12.94532 -12.69697 -12.66117 -12.58418 -12.51488 -12.39646 -12.28207 -12.13933 -11.93966 -11.84756 -11.71270 -11.55135 -10.71623 -10.63436 -10.53233 -10.42258 -10.05271 -8.58674 -6.35080 -0.80899 0.81585 1.53383 1.58900 1.62587 1.79084 1.80112 2.54416 2.63308 2.78975 2.93912 3.09695 3.16974 3.27943 3.46929 3.63833 3.77558 3.97321 4.02669 4.04825 4.13765 4.28054 4.34323 4.36787 4.51085 4.56714 4.60808 4.63299 4.64853 4.69987 4.74696 4.78277 4.88274 4.90324 4.95075 4.95850 5.13525 5.22418 5.24994 5.35488 5.41218 6.03129 6.15826 6.19163 6.67029 6.76576 7.44460 8.82611 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.005265 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.234291 B = 5317.111014 C = 6445.771803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.382 6.382 3 C 0.087 3.913 4 H 0.098 0.902 5 C 0.094 3.906 6 N -0.997 5.997 7 S 2.624 3.376 8 O -0.981 6.981 9 O -0.972 6.972 10 C -0.547 4.547 11 C -0.013 4.013 12 C -0.593 4.593 13 H 0.039 0.961 14 C -0.002 4.002 15 N -0.916 5.916 16 Si 1.091 2.909 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.271 1.271 20 C -0.194 4.194 21 C -0.151 4.151 22 C 0.188 3.812 23 C -0.172 4.172 24 C 0.467 3.533 25 O -0.518 6.518 26 O -0.505 6.505 27 C -0.101 4.101 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.271 0.729 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.429 0.571 44 H 0.110 0.890 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 -10.573 -13.075 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.300 6.300 3 C 0.027 3.973 4 H 0.116 0.884 5 C -0.031 4.031 6 N -0.835 5.835 7 S 2.724 3.276 8 O -0.972 6.972 9 O -0.962 6.962 10 C -0.680 4.680 11 C -0.016 4.016 12 C -0.630 4.630 13 H 0.057 0.943 14 C -0.204 4.204 15 N -0.551 5.551 16 Si 0.914 3.086 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.231 4.231 21 C -0.190 4.190 22 C 0.099 3.901 23 C -0.230 4.230 24 C 0.307 3.693 25 O -0.406 6.406 26 O -0.319 6.319 27 C -0.140 4.140 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.292 0.708 44 H 0.129 0.871 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.449 -11.143 -11.375 15.930 hybrid contribution 0.747 1.492 -1.344 2.143 sum 1.197 -9.652 -12.719 16.011 Atomic orbital electron populations 1.23082 0.79202 1.04334 1.01015 1.87868 1.21560 1.25908 1.94671 1.23275 0.95148 0.85970 0.92949 0.88404 1.22649 0.89178 0.91807 0.99487 1.58717 1.47652 1.46531 1.30628 1.04540 0.74909 0.75315 0.72858 1.93460 1.32586 1.86134 1.85002 1.93521 1.84225 1.78038 1.40444 1.29972 1.14987 1.15770 1.07303 1.18743 1.00165 0.88820 0.93835 1.21511 0.95650 1.50854 0.94974 0.94307 1.26759 0.93439 0.92695 1.07523 1.70845 1.37172 1.44143 1.02979 0.83269 0.76220 0.77461 0.71602 1.19945 1.20717 1.19658 1.23158 0.91015 1.06363 1.02596 1.22771 0.98846 0.97091 1.00266 1.20802 0.96987 0.91065 0.81286 1.22493 0.91152 1.04303 1.05086 1.24078 0.79066 0.84572 0.81596 1.90714 1.40637 1.70757 1.38475 1.84632 1.41803 1.40796 1.64688 1.22813 0.94034 0.96539 1.00566 0.92427 0.87667 0.93889 0.89677 0.90708 0.85869 0.84911 0.91807 0.89616 0.88551 0.88360 0.90913 0.88947 0.88318 0.91002 0.70822 0.87117 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.85 113.37 1.23 1.52 16 2 O -0.38 -7.45 10.51 -148.98 -1.57 -9.01 16 3 C 0.09 1.75 3.56 32.07 0.11 1.86 16 4 H 0.10 1.79 7.83 -2.39 -0.02 1.77 16 5 C 0.09 2.55 6.63 86.94 0.58 3.13 16 6 N -1.00 -30.86 2.82 -466.33 -1.31 -32.18 16 7 S 2.62 107.95 5.23 -56.49 -0.30 107.65 16 8 O -0.98 -42.09 14.98 -127.65 -1.91 -44.00 16 9 O -0.97 -48.25 16.55 -127.65 -2.11 -50.36 16 10 C -0.55 -22.17 4.96 71.98 0.36 -21.82 16 11 C -0.01 -0.63 0.84 -52.93 -0.04 -0.67 16 12 C -0.59 -32.78 7.60 25.60 0.19 -32.58 16 13 H 0.04 2.27 7.82 -2.91 -0.02 2.25 16 14 C 0.00 -0.09 5.42 84.65 0.46 0.36 16 15 N -0.92 -51.07 13.61 21.45 0.29 -50.78 16 16 Si 1.09 50.25 29.91 68.60 2.05 52.30 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C -0.19 -8.24 9.96 30.59 0.30 -7.94 16 21 C -0.15 -6.40 9.07 30.60 0.28 -6.12 16 22 C 0.19 4.79 0.83 3.20 0.00 4.79 16 23 C -0.17 -4.42 7.88 71.98 0.57 -3.85 16 24 C 0.47 12.15 6.71 71.24 0.48 12.62 16 25 O -0.52 -15.45 16.86 21.97 0.37 -15.08 16 26 O -0.50 -10.95 10.17 -51.37 -0.52 -11.47 16 27 C -0.10 -1.83 5.75 31.78 0.18 -1.65 16 28 H 0.06 0.70 8.12 -2.39 -0.02 0.68 16 29 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.12 5.18 7.52 -2.39 -0.02 5.16 16 34 H 0.13 4.44 6.06 -2.39 -0.01 4.43 16 35 H 0.27 14.67 6.04 -92.71 -0.56 14.11 16 36 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.10 3.68 8.14 -2.38 -0.02 3.66 16 38 H 0.10 3.56 8.14 -2.38 -0.02 3.55 16 39 H 0.07 3.31 8.14 -2.39 -0.02 3.30 16 40 H 0.09 2.05 8.13 -2.39 -0.02 2.03 16 41 H 0.10 2.11 7.86 -2.39 -0.02 2.09 16 42 H 0.07 2.33 5.58 -2.38 -0.01 2.32 16 43 H 0.43 5.66 9.10 -74.06 -0.67 4.99 16 44 H 0.11 1.57 7.83 -2.39 -0.02 1.55 16 45 H 0.12 1.87 7.84 -2.39 -0.02 1.85 16 Total: -1.00 -74.57 376.86 0.24 -74.33 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.55 Total: 28.94 kcal Atomic # 6 Polarization: -55.05 SS G_CDS: 4.70 Total: -50.35 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -1.02 Total: -82.96 kcal Atomic # 8 Polarization: -124.18 SS G_CDS: -5.74 Total: -129.93 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Atomic # 16 Polarization: 107.95 SS G_CDS: -0.30 Total: 107.65 kcal Total: -74.57 0.24 -74.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600661707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.755 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds