Wall clock time and date at job start Wed Apr 1 2020 05:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 S 1.81404 * 109.47155 * 179.97438 * 16 14 12 18 18 C 1.76197 * 102.99983 * 179.97438 * 17 16 14 19 19 C 1.39086 * 119.96283 * 359.72577 * 18 17 16 20 20 C 1.37842 * 120.03509 * 179.76439 * 19 18 17 21 21 C 1.39387 * 119.96042 * 0.50848 * 20 19 18 22 22 C 1.48402 * 120.03321 * 179.76799 * 21 20 19 23 23 N 1.34078 * 126.67736 * 180.02562 * 22 21 20 24 24 N 1.28981 * 107.26453 * 179.97438 * 23 22 21 25 25 N 1.28735 * 108.95488 * 359.97438 * 24 23 22 26 26 H 0.96995 * 125.33900 * 179.97438 * 25 24 23 27 27 N 1.28875 * 109.32209 * 359.74902 * 25 24 23 28 28 C 1.39389 * 119.92782 * 359.74276 * 21 20 19 29 29 C 1.37825 * 119.96671 * 0.02562 * 28 21 20 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 32 32 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 35 35 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 36 36 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 37 37 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 38 38 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 39 39 H 1.07996 * 119.98263 * 0.02562 * 19 18 17 40 40 H 1.07999 * 120.01890 * 180.27571 * 20 19 18 41 41 H 1.08008 * 120.01728 * 180.02562 * 28 21 20 42 42 H 1.08001 * 119.98679 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 16 4.3041 0.3942 4.3007 18 6 4.7940 -0.5965 5.6730 19 6 4.3724 -1.9190 5.7606 20 6 4.7587 -2.6968 6.8310 21 6 5.5635 -2.1541 7.8313 22 6 5.9761 -2.9886 8.9871 23 7 6.7428 -2.6056 10.0182 24 7 6.8637 -3.6216 10.8035 25 7 6.2089 -4.6132 10.3082 26 1 6.1405 -5.4951 10.7060 27 7 5.6547 -4.2488 9.2032 28 6 5.9808 -0.8270 7.7446 29 6 5.5967 -0.0534 6.6705 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.7088 1.1611 -3.4845 34 1 2.4158 -2.7376 0.9718 35 1 1.6238 -2.2851 2.5003 36 1 0.6905 -2.3002 0.9847 37 1 2.4483 -1.0888 3.9070 38 1 3.9016 -1.6021 3.0167 39 1 3.7455 -2.3380 4.9874 40 1 4.4348 -3.7250 6.8966 41 1 6.6048 -0.4051 8.5187 42 1 5.9195 0.9751 6.6032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735963651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:43 Heat of formation + Delta-G solvation = 122.678685 kcal Electronic energy + Delta-G solvation = -26118.127582 eV Core-core repulsion = 22227.979982 eV Total energy + Delta-G solvation = -3890.147600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.78261 -39.32229 -39.16956 -35.48027 -34.75930 -33.94552 -33.03344 -31.61031 -30.88713 -30.40317 -28.45052 -26.25126 -25.26808 -25.18743 -24.86011 -22.75908 -22.01367 -21.31445 -19.57161 -18.71569 -17.79504 -17.47487 -16.87710 -16.71460 -16.36590 -15.56180 -15.32015 -15.18019 -14.73091 -14.45053 -14.21338 -13.86675 -13.69997 -13.62292 -13.15853 -12.90559 -12.69413 -12.65271 -12.21761 -12.06971 -11.75180 -11.66924 -11.64620 -11.54462 -11.42741 -11.30630 -11.10057 -10.87105 -10.75728 -10.32578 -10.21682 -10.17927 -9.63330 -9.30817 -9.30137 -9.17088 -8.48034 -7.74753 -7.42487 -6.12129 -4.20661 0.33206 0.83217 1.09867 1.29244 1.88817 1.98781 2.32716 3.12738 3.25044 3.30624 3.32380 3.36223 3.45729 3.77753 3.85763 4.35201 4.60862 4.64141 4.84717 4.91170 4.97122 5.03906 5.10833 5.16817 5.19876 5.28317 5.36271 5.57397 5.71729 5.90445 5.93178 6.00716 6.03275 6.12886 6.17763 6.50087 6.68645 6.73855 6.96838 7.28922 7.41166 7.64539 7.79898 7.93403 8.11155 8.37287 8.71092 8.88242 9.45775 10.93158 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.001862 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.553692 B =15034.546017 C =15516.667069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.586 5.586 13 C 0.083 3.917 14 C 0.520 3.480 15 O -0.533 6.533 16 C -0.151 4.151 17 S -0.016 6.016 18 C -0.075 4.075 19 C -0.144 4.144 20 C -0.054 4.054 21 C -0.040 4.040 22 C 0.227 3.773 23 N -0.270 5.270 24 N -0.051 5.051 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.297 5.297 28 C -0.053 4.053 29 C -0.106 4.106 30 H 0.031 0.969 31 H 0.012 0.988 32 H 0.095 0.905 33 H 0.265 0.735 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.730 -11.436 23.268 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.317 5.317 13 C -0.061 4.061 14 C 0.304 3.696 15 O -0.411 6.411 16 C -0.302 4.302 17 S 0.232 5.768 18 C -0.190 4.190 19 C -0.168 4.168 20 C -0.076 4.076 21 C -0.047 4.047 22 C -0.052 4.052 23 N -0.143 5.143 24 N -0.046 5.046 25 N -0.075 5.075 26 H 0.329 0.671 27 N -0.149 5.149 28 C -0.075 4.075 29 C -0.130 4.130 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.258 -9.611 23.161 26.105 hybrid contribution -0.320 -2.691 -0.697 2.798 sum 6.939 -12.301 22.464 26.535 Atomic orbital electron populations 1.22107 0.98027 0.99440 1.01038 1.19014 0.90967 0.94570 0.79556 0.91680 1.21244 1.32105 1.13104 0.90197 0.92300 1.24898 0.94899 0.94976 0.99001 1.69864 1.36112 1.22492 1.23983 0.86531 0.79274 0.79521 0.81917 1.21130 1.20205 1.20244 1.48194 1.48442 1.11751 1.23321 1.21625 1.02118 0.83077 0.99269 1.19338 0.79932 0.86955 0.83335 1.90713 1.57842 1.16479 1.76105 1.24029 1.03391 1.02968 0.99845 1.86404 1.59405 1.15038 1.16001 1.22535 0.99462 0.97400 0.99584 1.21134 1.02927 0.93003 0.99758 1.21015 0.94750 0.99858 0.92016 1.17162 1.03148 0.92664 0.91706 1.23714 0.96511 0.88558 0.96454 1.76096 1.16924 1.19153 1.02137 1.78907 1.13281 0.91683 1.20710 1.47723 1.31048 1.15013 1.13701 0.67077 1.74950 1.20920 1.15178 1.03836 1.21063 0.97270 0.91759 0.97427 1.20669 0.98756 1.00531 0.93052 0.95037 0.96859 0.88632 0.92538 0.92945 0.93045 0.90433 0.86904 0.86820 0.85085 0.84791 0.84259 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 2 C 0.26 6.39 2.64 -69.09 -0.18 6.21 16 3 H 0.07 1.88 6.90 -51.92 -0.36 1.52 16 4 C -0.53 -13.87 8.37 -34.44 -0.29 -14.16 16 5 H 0.06 1.52 7.65 -52.49 -0.40 1.11 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.59 -11.77 2.75 -175.27 -0.48 -12.26 16 13 C 0.08 1.26 9.48 59.85 0.57 1.83 16 14 C 0.52 10.15 7.69 -10.98 -0.08 10.06 16 15 O -0.53 -12.68 15.19 5.56 0.08 -12.59 16 16 C -0.15 -2.06 3.37 36.01 0.12 -1.94 16 17 S -0.02 -0.22 21.06 -107.50 -2.26 -2.48 16 18 C -0.08 -0.85 6.12 -38.95 -0.24 -1.09 16 19 C -0.14 -1.42 9.35 -39.41 -0.37 -1.79 16 20 C -0.05 -0.51 9.69 -39.30 -0.38 -0.89 16 21 C -0.04 -0.40 5.88 -104.85 -0.62 -1.02 16 22 C 0.23 2.30 7.93 -156.28 -1.24 1.06 16 23 N -0.27 -2.87 12.23 32.15 0.39 -2.48 16 24 N -0.05 -0.44 13.47 60.35 0.81 0.37 16 25 N -0.23 -1.39 7.90 60.35 0.48 -0.92 16 26 H 0.48 0.57 8.96 -340.36 -3.05 -2.49 16 27 N -0.30 -2.55 12.08 32.17 0.39 -2.17 16 28 C -0.05 -0.50 9.69 -39.30 -0.38 -0.89 16 29 C -0.11 -1.07 9.78 -39.42 -0.39 -1.46 16 30 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.57 6.44 -51.93 -0.33 0.24 16 36 H 0.08 1.20 6.43 -51.93 -0.33 0.87 16 37 H 0.11 1.24 6.99 -51.92 -0.36 0.88 16 38 H 0.11 1.32 7.72 -51.92 -0.40 0.92 16 39 H 0.13 1.11 5.86 -52.49 -0.31 0.80 16 40 H 0.13 1.05 7.88 -52.49 -0.41 0.64 16 41 H 0.14 1.15 7.88 -52.48 -0.41 0.74 16 42 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -33.27 369.16 -10.10 -43.37 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.44 Total: -2.59 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.24 Total: -5.49 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 2.22 Total: -41.43 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.26 Total: -2.48 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.27 -10.10 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.045 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds