Wall clock time and date at job start Wed Apr 1 2020 05:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 S 1.81404 * 109.47155 * 179.97438 * 16 14 12 18 18 C 1.76197 * 102.99983 * 179.97438 * 17 16 14 19 19 C 1.39086 * 119.96283 * 359.72577 * 18 17 16 20 20 C 1.37842 * 120.03509 * 179.76439 * 19 18 17 21 21 C 1.39387 * 119.96042 * 0.50848 * 20 19 18 22 22 C 1.48402 * 120.03321 * 179.76799 * 21 20 19 23 23 N 1.34078 * 126.67736 * 180.02562 * 22 21 20 24 24 N 1.28981 * 107.26453 * 179.97438 * 23 22 21 25 25 N 1.28735 * 108.95488 * 359.97438 * 24 23 22 26 26 H 0.96995 * 125.33900 * 179.97438 * 25 24 23 27 27 N 1.28875 * 109.32209 * 359.74902 * 25 24 23 28 28 C 1.39389 * 119.92782 * 359.74276 * 21 20 19 29 29 C 1.37825 * 119.96671 * 0.02562 * 28 21 20 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 32 32 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 35 35 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 36 36 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 37 37 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 38 38 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 39 39 H 1.07996 * 119.98263 * 0.02562 * 19 18 17 40 40 H 1.07999 * 120.01890 * 180.27571 * 20 19 18 41 41 H 1.08008 * 120.01728 * 180.02562 * 28 21 20 42 42 H 1.08001 * 119.98679 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 16 4.3041 0.3942 4.3007 18 6 4.7940 -0.5965 5.6730 19 6 4.3724 -1.9190 5.7606 20 6 4.7587 -2.6968 6.8310 21 6 5.5635 -2.1541 7.8313 22 6 5.9761 -2.9886 8.9871 23 7 6.7428 -2.6056 10.0182 24 7 6.8637 -3.6216 10.8035 25 7 6.2089 -4.6132 10.3082 26 1 6.1405 -5.4951 10.7060 27 7 5.6547 -4.2488 9.2032 28 6 5.9808 -0.8270 7.7446 29 6 5.5967 -0.0534 6.6705 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.7088 1.1611 -3.4845 34 1 2.4158 -2.7376 0.9718 35 1 1.6238 -2.2851 2.5003 36 1 0.6905 -2.3002 0.9847 37 1 2.4483 -1.0888 3.9070 38 1 3.9016 -1.6021 3.0167 39 1 3.7455 -2.3380 4.9874 40 1 4.4348 -3.7250 6.8966 41 1 6.6048 -0.4051 8.5187 42 1 5.9195 0.9751 6.6032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735963651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:42 Heat of formation + Delta-G solvation = 101.435583 kcal Electronic energy + Delta-G solvation = -26119.048752 eV Core-core repulsion = 22227.979982 eV Total energy + Delta-G solvation = -3891.068770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.43708 -40.73275 -40.06799 -37.19046 -35.42954 -34.88119 -34.62594 -32.60476 -31.88074 -31.54901 -29.88510 -27.61746 -27.26140 -25.88935 -25.56893 -23.64566 -22.98528 -22.66473 -20.29248 -20.08974 -18.83176 -18.44026 -18.12080 -18.09334 -17.52056 -17.04379 -16.70691 -16.28990 -15.92765 -15.49768 -15.23742 -14.85429 -14.69524 -14.52736 -14.42131 -14.22188 -14.12928 -13.58116 -13.48496 -13.36687 -13.09094 -12.92175 -12.81269 -12.67674 -12.60238 -12.42295 -12.31548 -12.16808 -12.14036 -12.11884 -12.01037 -11.18815 -11.14158 -10.81168 -10.50044 -10.42862 -10.03207 -9.37743 -8.41209 -8.13920 -6.30406 -0.39753 0.17009 0.27253 0.37173 1.24668 1.36753 1.42532 1.44760 1.44939 1.51987 1.67340 2.28329 2.47658 2.68610 2.71448 3.14258 3.17157 3.55961 3.89774 3.93968 3.97474 4.14990 4.19582 4.32928 4.42507 4.46581 4.54105 4.64273 4.70417 4.80330 4.90037 5.02231 5.04699 5.07857 5.20091 5.26180 5.39753 5.46358 5.59513 5.63062 5.66373 5.76724 6.02226 6.15990 6.73830 6.76872 7.13190 7.25423 7.43561 8.90103 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.001862 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.553692 B =15034.546017 C =15516.667069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.009 0.991 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.286 1.286 10 H -0.278 1.278 11 H -0.261 1.261 12 N -0.593 5.593 13 C 0.076 3.924 14 C 0.510 3.490 15 O -0.588 6.588 16 C -0.129 4.129 17 S -0.074 6.074 18 C -0.079 4.079 19 C -0.140 4.140 20 C -0.052 4.052 21 C -0.042 4.042 22 C 0.214 3.786 23 N -0.294 5.294 24 N -0.058 5.058 25 N -0.201 5.201 26 H 0.494 0.506 27 N -0.295 5.295 28 C -0.055 4.055 29 C -0.109 4.109 30 H 0.050 0.950 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.264 0.736 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.925 -14.928 24.769 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.027 0.973 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.211 1.211 10 H -0.204 1.204 11 H -0.186 1.186 12 N -0.324 5.324 13 C -0.066 4.066 14 C 0.297 3.703 15 O -0.470 6.470 16 C -0.280 4.280 17 S 0.172 5.828 18 C -0.193 4.193 19 C -0.164 4.164 20 C -0.074 4.074 21 C -0.049 4.049 22 C -0.066 4.066 23 N -0.167 5.167 24 N -0.053 5.053 25 N -0.052 5.052 26 H 0.353 0.647 27 N -0.148 5.148 28 C -0.077 4.077 29 C -0.133 4.133 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.166 0.834 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.458 -13.173 24.718 28.984 hybrid contribution -0.332 -1.675 -1.006 1.982 sum 7.126 -14.848 23.711 28.870 Atomic orbital electron populations 1.21887 0.96959 1.00306 1.00046 1.18570 0.91734 0.92249 0.81486 0.97265 1.21532 1.31935 1.13104 0.91013 0.91937 1.25744 0.95131 0.95669 1.02066 1.70017 1.37236 1.23856 1.24468 0.85519 0.78358 0.79028 0.78168 1.21123 1.20361 1.18586 1.48157 1.48526 1.13633 1.22074 1.21939 1.01999 0.79968 1.02660 1.20248 0.78951 0.86554 0.84581 1.90688 1.59569 1.19168 1.77578 1.23850 1.04727 1.02313 0.97096 1.86672 1.60710 1.17211 1.18229 1.22374 1.00674 0.97689 0.98589 1.21360 1.02605 0.92220 1.00252 1.21191 0.94250 1.00587 0.91404 1.17348 1.02892 0.92770 0.91868 1.23773 0.97075 0.89100 0.96660 1.76081 1.17776 1.20120 1.02700 1.78859 1.13775 0.91974 1.20681 1.47794 1.29225 1.15466 1.12691 0.64678 1.74907 1.20865 1.14578 1.04413 1.21150 0.97341 0.91799 0.97373 1.20800 0.98519 1.01012 0.92979 0.93065 0.95983 0.91457 0.92673 0.92104 0.88151 0.90858 0.83439 0.84069 0.83157 0.82983 0.83411 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.95 71.98 0.64 -5.59 16 2 C 0.26 13.24 2.64 44.24 0.12 13.35 16 3 H 0.01 0.57 6.90 -2.38 -0.02 0.56 16 4 C -0.54 -28.46 8.37 25.60 0.21 -28.24 16 5 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.35 11.32 21.45 0.24 -52.10 16 8 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 9 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 N -0.59 -23.43 2.75 -826.81 -2.28 -25.71 16 13 C 0.08 2.08 9.48 127.77 1.21 3.29 16 14 C 0.51 19.76 7.69 87.66 0.67 20.43 16 15 O -0.59 -29.16 15.19 -3.03 -0.05 -29.21 16 16 C -0.13 -3.22 3.37 71.24 0.24 -2.98 16 17 S -0.07 -2.03 21.06 -56.49 -1.19 -3.22 16 18 C -0.08 -1.65 6.12 22.68 0.14 -1.51 16 19 C -0.14 -2.34 9.35 22.38 0.21 -2.13 16 20 C -0.05 -0.82 9.69 22.45 0.22 -0.60 16 21 C -0.04 -0.76 5.88 -20.02 -0.12 -0.87 16 22 C 0.21 3.89 7.93 137.34 1.09 4.98 16 23 N -0.29 -5.82 12.23 -52.19 -0.64 -6.45 16 24 N -0.06 -0.91 13.47 37.02 0.50 -0.41 16 25 N -0.20 -1.94 7.90 37.02 0.29 -1.65 16 26 H 0.49 -0.22 8.96 -347.53 -3.12 -3.33 16 27 N -0.30 -4.29 12.08 -52.14 -0.63 -4.92 16 28 C -0.05 -0.96 9.69 22.45 0.22 -0.75 16 29 C -0.11 -2.10 9.78 22.38 0.22 -1.88 16 30 H 0.05 2.13 6.66 -2.39 -0.02 2.11 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.74 6.44 -2.38 -0.02 1.72 16 36 H 0.07 2.07 6.43 -2.39 -0.02 2.05 16 37 H 0.15 2.62 6.99 -2.39 -0.02 2.61 16 38 H 0.14 2.75 7.72 -2.39 -0.02 2.73 16 39 H 0.15 1.85 5.86 -2.91 -0.02 1.83 16 40 H 0.15 1.80 7.88 -2.91 -0.02 1.78 16 41 H 0.15 2.30 7.88 -2.91 -0.02 2.27 16 42 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -76.11 369.16 1.78 -74.33 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -2.02 Total: 6.24 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 5.52 Total: -1.32 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -2.51 Total: -91.24 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.21 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -1.19 Total: -3.22 kcal Total: -76.11 1.78 -74.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.768 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds