Wall clock time and date at job start Wed Apr 1 2020 04:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 120.00047 * 2 1 4 4 H 1.48503 * 109.46819 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47012 * 300.00335 * 3 2 1 6 6 H 1.48494 * 109.46831 * 60.00612 * 3 2 1 7 7 C 1.38943 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00070 * 199.11793 * 7 2 1 9 9 N 1.37098 * 120.00668 * 19.11485 * 7 2 1 10 10 C 1.34779 * 119.99859 * 42.79854 * 9 7 2 11 11 O 1.21290 * 119.99783 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99770 * 179.73125 * 10 9 7 13 13 C 1.50706 * 109.46928 * 180.27636 * 12 10 9 14 14 C 1.33715 * 122.07513 * 124.99623 * 13 12 10 15 15 S 1.76249 * 108.21459 * 179.97438 * 14 13 12 16 16 C 1.76175 * 89.83882 * 359.97438 * 15 14 13 17 17 C 1.47901 * 125.47565 * 180.02562 * 16 15 14 18 18 N 1.34116 * 125.67634 * 179.67057 * 17 16 15 19 19 C 1.30623 * 109.77660 * 179.81699 * 18 17 16 20 20 N 1.34571 * 108.33673 * 0.44046 * 19 18 17 21 21 H 0.97000 * 126.72693 * 179.74944 * 20 19 18 22 22 N 1.31662 * 125.66703 * 359.97438 * 17 16 15 23 23 N 1.30219 * 109.05404 * 359.76593 * 16 15 14 24 24 C 1.46499 * 120.00311 * 222.80494 * 9 7 2 25 25 C 1.54267 * 110.03463 * 59.52479 * 24 9 7 26 26 C 1.54959 * 104.16324 * 217.13855 * 25 24 9 27 27 C 1.54891 * 102.77899 * 37.89121 * 26 25 24 28 28 C 1.53877 * 110.02836 * 302.31374 * 24 9 7 29 29 H 0.97003 * 119.99751 * 354.72766 * 1 2 3 30 30 H 1.08998 * 109.46889 * 300.27138 * 12 10 9 31 31 H 1.09001 * 109.47488 * 60.27340 * 12 10 9 32 32 H 1.07992 * 125.88896 * 359.95859 * 14 13 12 33 33 H 1.08001 * 125.83258 * 180.19196 * 19 18 17 34 34 H 1.08991 * 110.01952 * 180.91787 * 24 9 7 35 35 H 1.09002 * 110.48845 * 335.78799 * 25 24 9 36 36 H 1.09000 * 110.48343 * 98.42866 * 25 24 9 37 37 H 1.08996 * 110.72175 * 279.57560 * 26 25 24 38 38 H 1.09002 * 110.92424 * 156.29535 * 26 25 24 39 39 H 1.08996 * 110.48836 * 203.40699 * 27 26 25 40 40 H 1.09002 * 110.59963 * 80.81243 * 27 26 25 41 41 H 1.09003 * 110.03023 * 238.56541 * 28 24 9 42 42 H 1.08997 * 110.03637 * 359.94471 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8895 2.3963 1.2125 7 6 2.0087 -1.2033 -0.0005 8 1 3.0441 -1.2294 0.3058 9 7 1.3800 -2.3578 -0.3898 10 6 0.5746 -2.3550 -1.4705 11 8 0.4057 -1.3310 -2.0983 12 6 -0.1118 -3.6253 -1.9019 13 6 -0.9420 -3.3554 -3.1304 14 6 -0.7936 -4.0606 -4.2567 15 16 -1.9379 -3.4444 -5.4473 16 6 -2.5174 -2.2659 -4.2730 17 6 -3.5833 -1.2688 -4.5120 18 7 -4.0318 -0.3741 -3.6192 19 6 -4.9723 0.3548 -4.1582 20 7 -5.1605 -0.0646 -5.4230 21 1 -5.7976 0.2897 -6.0628 22 7 -4.2534 -1.1156 -5.6349 23 7 -1.8605 -2.4175 -3.1589 24 6 1.5834 -3.5944 0.3689 25 6 1.1303 -3.3983 1.8304 26 6 2.1600 -4.2079 2.6584 27 6 3.4872 -3.9478 1.9035 28 6 3.0812 -3.9439 0.4151 29 1 -0.4850 0.8365 0.0772 30 1 0.6373 -4.3838 -2.1292 31 1 -0.7567 -3.9809 -1.0984 32 1 -0.0932 -4.8681 -4.4104 33 1 -5.5100 1.1546 -3.6707 34 1 1.0237 -4.4096 -0.0894 35 1 1.1666 -2.3436 2.1029 36 1 0.1259 -3.7963 1.9750 37 1 1.9125 -5.2694 2.6501 38 1 2.2175 -3.8342 3.6807 39 1 4.2018 -4.7465 2.1019 40 1 3.9068 -2.9825 2.1869 41 1 3.2483 -4.9293 -0.0199 42 1 3.6566 -3.1941 -0.1277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737923699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:38 Heat of formation + Delta-G solvation = 120.459030 kcal Electronic energy + Delta-G solvation = -28077.093073 eV Core-core repulsion = 24186.849222 eV Total energy + Delta-G solvation = -3890.243851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05815 -39.55578 -38.42258 -36.42172 -33.29451 -32.94946 -31.87143 -31.48026 -30.60580 -28.00491 -27.81391 -26.71238 -25.47944 -24.17178 -22.83349 -21.16994 -20.01891 -19.80293 -19.34085 -18.83146 -18.28861 -17.28746 -16.21729 -15.79619 -15.58863 -15.48660 -14.92693 -14.78268 -14.45860 -14.13789 -13.88728 -13.56705 -13.19547 -13.07766 -12.77681 -12.65017 -12.23896 -11.93547 -11.76521 -11.17312 -11.07587 -10.88977 -10.69224 -10.57610 -10.52604 -10.43361 -10.37845 -10.26997 -10.07383 -10.06790 -9.99585 -9.93244 -9.67693 -9.22700 -9.01172 -8.56520 -8.28419 -7.76022 -6.85980 -5.88227 -3.61814 0.56852 1.45957 1.65071 1.93167 2.45548 2.79527 3.40437 3.50099 3.53130 3.54530 3.82090 4.36406 4.44794 4.57372 4.97118 5.04063 5.14911 5.29013 5.33392 5.39215 5.49615 5.57306 5.68775 5.92559 5.97659 6.04015 6.08757 6.11568 6.16658 6.22266 6.28418 6.36537 6.38440 6.48083 6.53088 6.58869 6.71484 6.89268 6.89991 7.06019 7.32281 7.83410 7.93070 8.22868 8.48963 9.27887 9.41757 9.89684 10.54537 11.19602 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.003676 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.122098 B = 7614.857062 C = 9090.639863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.345 4.345 8 H 0.075 0.925 9 N -0.451 5.451 10 C 0.481 3.519 11 O -0.513 6.513 12 C -0.071 4.071 13 C 0.108 3.892 14 C -0.244 4.244 15 S 0.097 5.903 16 C 0.131 3.869 17 C 0.312 3.688 18 N -0.492 5.492 19 C 0.263 3.737 20 N -0.483 5.483 21 H 0.443 0.557 22 N -0.299 5.299 23 N -0.369 5.369 24 C 0.130 3.870 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.131 4.131 29 H 0.261 0.739 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.181 0.819 33 H 0.228 0.772 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 -7.460 -6.471 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.472 4.472 8 H 0.093 0.907 9 N -0.174 5.174 10 C 0.266 3.734 11 O -0.389 6.389 12 C -0.114 4.114 13 C -0.026 4.026 14 C -0.384 4.384 15 S 0.350 5.650 16 C -0.148 4.148 17 C 0.029 3.971 18 N -0.219 5.219 19 C -0.037 4.037 20 N -0.203 5.203 21 H 0.288 0.712 22 N -0.132 5.132 23 N -0.083 5.083 24 C 0.025 3.975 25 C -0.164 4.164 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.169 4.169 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.198 0.802 33 H 0.244 0.756 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.468 -7.118 -7.755 12.907 hybrid contribution 0.270 1.168 0.493 1.296 sum -7.198 -5.950 -7.263 11.830 Atomic orbital electron populations 1.69845 1.06143 1.26949 1.42027 1.25170 0.94670 0.98899 0.94970 0.86338 0.79847 0.83722 0.77216 1.19846 1.21051 1.21502 1.18738 0.94747 0.84057 1.49611 0.90708 1.43322 1.44414 1.07225 1.22443 1.19468 0.83439 0.88346 0.82149 1.90571 1.61254 1.32952 1.54096 1.20452 0.97380 1.00124 0.93468 1.19776 0.95149 0.91408 0.96244 1.26909 1.06924 1.08535 0.96059 1.84681 1.32413 1.29857 1.18082 1.23609 0.99521 0.99549 0.92146 1.20641 0.94566 0.94351 0.87536 1.70798 1.11949 1.07391 1.31771 1.26333 0.95278 0.98857 0.83214 1.48125 1.31408 1.27266 1.13478 0.71151 1.78241 1.06781 1.07065 1.21113 1.66257 1.04493 1.14961 1.22564 1.21670 0.94317 0.88860 0.92672 1.22661 0.96733 1.02259 0.94700 1.22450 0.95993 0.99137 0.98486 1.22252 0.96760 1.00805 0.95640 1.22462 0.97707 1.00380 0.96390 0.92853 0.89234 0.88882 0.80171 0.75560 0.91750 0.89056 0.93057 0.92618 0.92461 0.93059 0.91645 0.93067 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.85 11.66 55.50 0.65 -24.21 16 2 C 0.07 2.13 4.35 -17.47 -0.08 2.05 16 3 Si 0.90 22.64 29.60 -169.99 -5.03 17.61 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.34 -9.36 7.45 -14.94 -0.11 -9.47 16 8 H 0.08 1.99 7.09 -52.48 -0.37 1.62 16 9 N -0.45 -11.08 2.46 -106.55 -0.26 -11.34 16 10 C 0.48 12.32 6.93 -10.99 -0.08 12.24 16 11 O -0.51 -15.57 13.08 5.55 0.07 -15.50 16 12 C -0.07 -1.40 4.49 -29.03 -0.13 -1.53 16 13 C 0.11 2.16 5.60 -84.40 -0.47 1.69 16 14 C -0.24 -3.88 11.02 29.15 0.32 -3.56 16 15 S 0.10 1.50 23.43 -107.50 -2.52 -1.02 16 16 C 0.13 2.59 7.54 -14.28 -0.11 2.48 16 17 C 0.31 5.81 8.04 -156.59 -1.26 4.55 16 18 N -0.49 -9.04 11.22 -12.47 -0.14 -9.18 16 19 C 0.26 3.05 13.11 -90.70 -1.19 1.86 16 20 N -0.48 -5.03 7.44 29.52 0.22 -4.81 16 21 H 0.44 2.43 8.96 -182.34 -1.63 0.80 16 22 N -0.30 -4.58 12.84 32.03 0.41 -4.17 16 23 N -0.37 -8.36 9.67 -7.54 -0.07 -8.44 16 24 C 0.13 2.52 3.21 -66.81 -0.21 2.31 16 25 C -0.13 -2.36 6.42 -25.03 -0.16 -2.52 16 26 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 27 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 28 C -0.13 -2.23 6.19 -25.61 -0.16 -2.39 16 29 H 0.26 7.78 8.32 -40.82 -0.34 7.44 16 30 H 0.09 1.42 7.64 -51.93 -0.40 1.03 16 31 H 0.09 1.76 7.81 -51.93 -0.41 1.35 16 32 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 33 H 0.23 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.06 1.11 5.82 -51.93 -0.30 0.81 16 35 H 0.09 2.06 7.10 -51.93 -0.37 1.69 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.46 6.86 -51.93 -0.36 1.10 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -39.35 365.38 -11.50 -50.84 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.35 Total: 0.96 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -3.98 Total: 3.74 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.80 Total: -62.15 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.07 Total: -15.50 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.52 Total: -1.02 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.35 -11.50 -50.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737923699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.304 kcal (2) G-P(sol) polarization free energy of solvation -39.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds