Wall clock time and date at job start Wed Apr 1 2020 04:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 120.00047 * 2 1 4 4 H 1.48503 * 109.46819 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47012 * 300.00335 * 3 2 1 6 6 H 1.48494 * 109.46831 * 60.00612 * 3 2 1 7 7 C 1.38943 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00070 * 199.11793 * 7 2 1 9 9 N 1.37098 * 120.00668 * 19.11485 * 7 2 1 10 10 C 1.34779 * 119.99859 * 42.79854 * 9 7 2 11 11 O 1.21290 * 119.99783 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99770 * 179.73125 * 10 9 7 13 13 C 1.50706 * 109.46928 * 180.27636 * 12 10 9 14 14 C 1.33715 * 122.07513 * 124.99623 * 13 12 10 15 15 S 1.76249 * 108.21459 * 179.97438 * 14 13 12 16 16 C 1.76175 * 89.83882 * 359.97438 * 15 14 13 17 17 C 1.47901 * 125.47565 * 180.02562 * 16 15 14 18 18 N 1.34116 * 125.67634 * 179.67057 * 17 16 15 19 19 C 1.30623 * 109.77660 * 179.81699 * 18 17 16 20 20 N 1.34571 * 108.33673 * 0.44046 * 19 18 17 21 21 H 0.97000 * 126.72693 * 179.74944 * 20 19 18 22 22 N 1.31662 * 125.66703 * 359.97438 * 17 16 15 23 23 N 1.30219 * 109.05404 * 359.76593 * 16 15 14 24 24 C 1.46499 * 120.00311 * 222.80494 * 9 7 2 25 25 C 1.54267 * 110.03463 * 59.52479 * 24 9 7 26 26 C 1.54959 * 104.16324 * 217.13855 * 25 24 9 27 27 C 1.54891 * 102.77899 * 37.89121 * 26 25 24 28 28 C 1.53877 * 110.02836 * 302.31374 * 24 9 7 29 29 H 0.97003 * 119.99751 * 354.72766 * 1 2 3 30 30 H 1.08998 * 109.46889 * 300.27138 * 12 10 9 31 31 H 1.09001 * 109.47488 * 60.27340 * 12 10 9 32 32 H 1.07992 * 125.88896 * 359.95859 * 14 13 12 33 33 H 1.08001 * 125.83258 * 180.19196 * 19 18 17 34 34 H 1.08991 * 110.01952 * 180.91787 * 24 9 7 35 35 H 1.09002 * 110.48845 * 335.78799 * 25 24 9 36 36 H 1.09000 * 110.48343 * 98.42866 * 25 24 9 37 37 H 1.08996 * 110.72175 * 279.57560 * 26 25 24 38 38 H 1.09002 * 110.92424 * 156.29535 * 26 25 24 39 39 H 1.08996 * 110.48836 * 203.40699 * 27 26 25 40 40 H 1.09002 * 110.59963 * 80.81243 * 27 26 25 41 41 H 1.09003 * 110.03023 * 238.56541 * 28 24 9 42 42 H 1.08997 * 110.03637 * 359.94471 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8895 2.3963 1.2125 7 6 2.0087 -1.2033 -0.0005 8 1 3.0441 -1.2294 0.3058 9 7 1.3800 -2.3578 -0.3898 10 6 0.5746 -2.3550 -1.4705 11 8 0.4057 -1.3310 -2.0983 12 6 -0.1118 -3.6253 -1.9019 13 6 -0.9420 -3.3554 -3.1304 14 6 -0.7936 -4.0606 -4.2567 15 16 -1.9379 -3.4444 -5.4473 16 6 -2.5174 -2.2659 -4.2730 17 6 -3.5833 -1.2688 -4.5120 18 7 -4.0318 -0.3741 -3.6192 19 6 -4.9723 0.3548 -4.1582 20 7 -5.1605 -0.0646 -5.4230 21 1 -5.7976 0.2897 -6.0628 22 7 -4.2534 -1.1156 -5.6349 23 7 -1.8605 -2.4175 -3.1589 24 6 1.5834 -3.5944 0.3689 25 6 1.1303 -3.3983 1.8304 26 6 2.1600 -4.2079 2.6584 27 6 3.4872 -3.9478 1.9035 28 6 3.0812 -3.9439 0.4151 29 1 -0.4850 0.8365 0.0772 30 1 0.6373 -4.3838 -2.1292 31 1 -0.7567 -3.9809 -1.0984 32 1 -0.0932 -4.8681 -4.4104 33 1 -5.5100 1.1546 -3.6707 34 1 1.0237 -4.4096 -0.0894 35 1 1.1666 -2.3436 2.1029 36 1 0.1259 -3.7963 1.9750 37 1 1.9125 -5.2694 2.6501 38 1 2.2175 -3.8342 3.6807 39 1 4.2018 -4.7465 2.1019 40 1 3.9068 -2.9825 2.1869 41 1 3.2483 -4.9293 -0.0199 42 1 3.6566 -3.1941 -0.1277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737923699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:37 Heat of formation + Delta-G solvation = 92.863440 kcal Electronic energy + Delta-G solvation = -28078.289708 eV Core-core repulsion = 24186.849222 eV Total energy + Delta-G solvation = -3891.440486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.13822 -41.05283 -40.02198 -38.08134 -35.06293 -34.29333 -33.51026 -32.90891 -32.01702 -29.43254 -29.28165 -28.26143 -26.82922 -26.04499 -23.85599 -22.59548 -21.40763 -21.30778 -20.86979 -20.24591 -19.33951 -18.74029 -17.93877 -17.52862 -16.91557 -16.73925 -16.46758 -16.11015 -15.91668 -15.75662 -15.47049 -15.13108 -14.77795 -14.54807 -14.17160 -14.04827 -13.69892 -13.37785 -13.31946 -13.01223 -12.87534 -12.58151 -12.39214 -12.17193 -12.13041 -12.01306 -11.76081 -11.70768 -11.55846 -11.29142 -11.23120 -11.20862 -11.14750 -10.65190 -10.56791 -10.29926 -9.84759 -9.45679 -8.87157 -8.04166 -5.77600 -0.69737 0.19996 0.56348 0.65206 1.34393 1.42774 1.49247 1.53983 1.57952 2.21668 2.36981 2.65012 2.73998 3.34664 3.38071 3.43995 3.81468 3.96706 4.03223 4.07542 4.17620 4.22771 4.34878 4.54436 4.56886 4.66620 4.78467 4.82281 4.90077 4.92058 4.93225 4.98101 5.01794 5.17003 5.21741 5.26321 5.36625 5.53291 5.65989 5.67779 5.76766 6.15093 6.35934 6.80764 7.01076 7.20897 7.44060 7.90619 8.59560 9.03511 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.003676 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.122098 B = 7614.857062 C = 9090.639863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.023 3.977 3 Si 0.952 3.048 4 H -0.257 1.257 5 H -0.306 1.306 6 H -0.277 1.277 7 C -0.339 4.339 8 H 0.075 0.925 9 N -0.463 5.463 10 C 0.465 3.535 11 O -0.571 6.571 12 C -0.057 4.057 13 C 0.066 3.934 14 C -0.222 4.222 15 S 0.167 5.833 16 C 0.092 3.908 17 C 0.282 3.718 18 N -0.563 5.563 19 C 0.282 3.718 20 N -0.457 5.457 21 H 0.466 0.534 22 N -0.306 5.306 23 N -0.427 5.427 24 C 0.121 3.879 25 C -0.127 4.127 26 C -0.110 4.110 27 C -0.114 4.114 28 C -0.126 4.126 29 H 0.250 0.750 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.226 0.774 33 H 0.281 0.719 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 -10.028 -7.291 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.233 1.233 6 H -0.203 1.203 7 C -0.467 4.467 8 H 0.093 0.907 9 N -0.186 5.186 10 C 0.252 3.748 11 O -0.450 6.450 12 C -0.100 4.100 13 C -0.068 4.068 14 C -0.362 4.362 15 S 0.420 5.580 16 C -0.185 4.185 17 C 0.000 4.000 18 N -0.292 5.292 19 C -0.016 4.016 20 N -0.180 5.180 21 H 0.317 0.683 22 N -0.141 5.141 23 N -0.143 5.143 24 C 0.017 3.983 25 C -0.166 4.166 26 C -0.147 4.147 27 C -0.151 4.151 28 C -0.164 4.164 29 H 0.059 0.941 30 H 0.151 0.849 31 H 0.113 0.887 32 H 0.242 0.758 33 H 0.296 0.704 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.931 -9.701 -8.571 14.684 hybrid contribution 0.046 1.931 0.632 2.033 sum -6.885 -7.770 -7.939 13.069 Atomic orbital electron populations 1.69990 1.07591 1.26532 1.45081 1.25891 0.95212 1.01924 0.95371 0.85517 0.79636 0.80441 0.76457 1.18065 1.23326 1.20308 1.18921 0.94777 0.85315 1.47699 0.90690 1.43592 1.43887 1.08163 1.22942 1.20480 0.82909 0.89735 0.81650 1.90529 1.63001 1.35562 1.55942 1.20335 0.97924 0.97738 0.93979 1.19877 0.96279 0.92953 0.97677 1.27431 1.06258 1.07874 0.94592 1.84296 1.30714 1.27105 1.15857 1.24005 1.00240 1.01182 0.93094 1.20762 0.95571 0.95213 0.88503 1.70700 1.14916 1.09413 1.34167 1.27185 0.93333 0.98102 0.83007 1.48008 1.30475 1.25651 1.13856 0.68312 1.78086 1.07245 1.08486 1.20233 1.66186 1.06189 1.16843 1.25042 1.22028 0.96681 0.87278 0.92341 1.22592 0.98409 1.00093 0.95460 1.22407 0.94130 1.00175 0.98013 1.22247 0.97524 1.01088 0.94286 1.22420 0.95092 1.01302 0.97582 0.94079 0.84859 0.88657 0.75750 0.70417 0.89000 0.93819 0.92833 0.89462 0.91718 0.89608 0.93672 0.89446 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -55.37 11.66 21.66 0.25 -55.11 16 2 C 0.02 1.35 4.35 84.93 0.37 1.72 16 3 Si 0.95 48.56 29.60 68.60 2.03 50.59 16 4 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.31 -16.53 7.11 99.48 0.71 -15.82 16 6 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.34 -19.06 7.45 84.04 0.63 -18.43 16 8 H 0.08 4.10 7.09 -2.91 -0.02 4.08 16 9 N -0.46 -23.23 2.46 -609.39 -1.50 -24.73 16 10 C 0.46 24.46 6.93 87.66 0.61 25.07 16 11 O -0.57 -36.37 13.08 -3.06 -0.04 -36.41 16 12 C -0.06 -2.23 4.49 29.10 0.13 -2.10 16 13 C 0.07 2.63 5.60 41.61 0.23 2.86 16 14 C -0.22 -6.55 11.02 66.79 0.74 -5.82 16 15 S 0.17 4.97 23.43 -56.49 -1.32 3.65 16 16 C 0.09 3.78 7.54 87.49 0.66 4.44 16 17 C 0.28 10.87 8.04 137.22 1.10 11.98 16 18 N -0.56 -21.51 11.22 -193.37 -2.17 -23.68 16 19 C 0.28 6.34 13.11 180.38 2.36 8.70 16 20 N -0.46 -8.95 7.44 -60.52 -0.45 -9.40 16 21 H 0.47 4.08 8.96 -213.10 -1.91 2.17 16 22 N -0.31 -9.34 12.84 -52.58 -0.68 -10.02 16 23 N -0.43 -20.20 9.67 -177.77 -1.72 -21.92 16 24 C 0.12 4.55 3.21 45.72 0.15 4.69 16 25 C -0.13 -4.75 6.42 31.69 0.20 -4.54 16 26 C -0.11 -3.00 6.91 31.91 0.22 -2.78 16 27 C -0.11 -3.17 6.83 31.67 0.22 -2.96 16 28 C -0.13 -3.98 6.19 31.32 0.19 -3.79 16 29 H 0.25 15.97 8.32 -92.71 -0.77 15.20 16 30 H 0.13 3.84 7.64 -2.39 -0.02 3.82 16 31 H 0.10 3.59 7.81 -2.39 -0.02 3.57 16 32 H 0.23 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.28 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.09 2.93 5.82 -2.39 -0.01 2.91 16 35 H 0.04 2.04 7.10 -2.39 -0.02 2.03 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.76 6.86 -2.39 -0.02 1.74 16 Total: -1.00 -96.20 365.38 1.39 -94.81 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -0.83 Total: 13.18 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 7.81 Total: 19.04 kcal Atomic # 7 Polarization: -138.61 SS G_CDS: -6.26 Total: -144.87 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.04 Total: -36.41 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -1.32 Total: 3.65 kcal Total: -96.20 1.39 -94.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737923699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.677 kcal (2) G-P(sol) polarization free energy of solvation -96.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds