Wall clock time and date at job start Wed Apr 1 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36452 * 127.16134 * 90.02716 * 3 2 1 5 5 S 1.76197 * 126.37641 * 0.02562 * 4 3 2 6 6 C 1.81005 * 100.00227 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47494 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99629 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00403 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00537 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47495 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99756 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00088 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99998 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99695 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47222 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46965 * 119.99928 * 15 13 11 18 18 H 1.48497 * 109.46620 * 239.99650 * 15 13 11 19 19 N 1.31560 * 107.24797 * 180.02562 * 4 3 2 20 20 N 1.28511 * 110.06821 * 359.97438 * 19 4 3 21 21 C 1.31297 * 109.93877 * 359.72434 * 20 19 4 22 22 C 1.47752 * 126.46599 * 180.30427 * 21 20 19 23 23 C 1.39603 * 119.75326 * 0.15527 * 22 21 20 24 24 C 1.38308 * 119.04848 * 179.97438 * 23 22 21 25 25 C 1.38848 * 118.54054 * 0.02562 * 24 23 22 26 26 C 1.38257 * 119.41298 * 359.97438 * 25 24 23 27 27 N 1.31748 * 120.91841 * 359.73735 * 26 25 24 28 28 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 33 33 H 1.09003 * 109.46967 * 300.00031 * 6 5 4 34 34 H 1.09004 * 109.46832 * 59.99745 * 6 5 4 35 35 H 0.97006 * 119.99591 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.46896 * 300.00276 * 10 9 7 37 37 H 1.08997 * 109.46962 * 60.00208 * 10 9 7 38 38 H 0.97002 * 119.99799 * 180.02562 * 14 13 11 39 39 H 1.08001 * 120.47094 * 0.02562 * 23 22 21 40 40 H 1.08006 * 120.72665 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.29687 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.54171 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2935 2.1582 1.0874 5 16 2.1284 1.6869 2.7772 6 6 2.6692 3.2144 3.5838 7 6 2.6087 3.0413 5.0796 8 8 2.2370 1.9886 5.5536 9 7 2.9686 4.0558 5.8905 10 6 2.9103 3.8873 7.3446 11 6 3.3605 5.1591 8.0161 12 1 3.6605 6.0079 7.4194 13 6 3.3904 5.2387 9.3923 14 7 3.0257 4.2050 10.1189 15 14 3.9491 6.8150 10.2246 16 1 4.3044 7.8211 9.1918 17 1 2.8508 7.3428 11.0733 18 1 5.1369 6.5339 11.0705 19 7 2.7050 3.3247 0.6393 20 7 2.7058 3.3281 -0.6458 21 6 2.3009 2.1634 -1.0968 22 6 2.1697 1.7681 -2.5144 23 6 2.4965 2.6788 -3.5207 24 6 2.3688 2.2932 -4.8428 25 6 1.9178 1.0093 -5.1188 26 6 1.6116 0.1579 -4.0734 27 7 1.7469 0.5466 -2.8219 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.6928 3.4403 3.2849 34 1 2.0146 4.0337 3.2864 35 1 3.2663 4.8976 5.5113 36 1 1.8866 3.6617 7.6435 37 1 3.5646 3.0678 7.6419 38 1 3.0464 4.2612 11.0871 39 1 2.8449 3.6699 -3.2704 40 1 2.6145 2.9758 -5.6430 41 1 1.8079 0.6784 -6.1410 42 1 1.2603 -0.8410 -4.2857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765350248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:04 Heat of formation + Delta-G solvation = 75.791331 kcal Electronic energy + Delta-G solvation = -26083.249872 eV Core-core repulsion = 22191.069084 eV Total energy + Delta-G solvation = -3892.180788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.02132 -40.44883 -38.88227 -35.98094 -34.31485 -33.19670 -32.84145 -32.43717 -30.85334 -30.38189 -29.58706 -26.86061 -25.15825 -24.36170 -23.87126 -22.71447 -22.35417 -21.37055 -19.93682 -18.36676 -17.57493 -17.03834 -16.79962 -16.51147 -16.24166 -15.97326 -15.78541 -15.20912 -15.19609 -14.71947 -14.47051 -14.40749 -14.15267 -13.76265 -13.59001 -13.41871 -12.96261 -12.77057 -12.66568 -12.43260 -12.01618 -11.74775 -11.71192 -11.68351 -11.10159 -10.96571 -10.92848 -10.80199 -10.51134 -10.44692 -10.38449 -10.33805 -10.04598 -9.43164 -9.35193 -9.28141 -8.79241 -8.02241 -7.66005 -6.19585 -4.26718 0.15444 0.71964 0.88316 1.58960 1.94644 2.31469 2.51546 3.12655 3.23150 3.30267 3.30533 3.33671 3.38349 3.92609 4.07007 4.30869 4.33572 4.38526 4.51084 4.55023 4.69152 4.79318 4.86853 5.04738 5.14555 5.17144 5.17569 5.25961 5.26200 5.34063 5.44013 5.51971 5.55510 5.68155 5.78595 5.81792 6.08326 6.43129 7.21034 7.27859 7.28542 7.45023 7.60235 7.91699 8.32998 8.46958 8.68112 8.93030 9.39729 10.90564 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.028825 B = 0.001810 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.137555 B =15461.661718 C =16319.031000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.439 5.439 4 C 0.154 3.846 5 S 0.087 5.913 6 C -0.145 4.145 7 C 0.517 3.483 8 O -0.544 6.544 9 N -0.700 5.700 10 C 0.249 3.751 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 N -0.292 5.292 20 N -0.256 5.256 21 C 0.211 3.789 22 C 0.205 3.795 23 C -0.126 4.126 24 C -0.071 4.071 25 C -0.166 4.166 26 C 0.106 3.894 27 N -0.479 5.479 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.395 0.605 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 -8.630 -32.229 33.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.131 5.131 4 C -0.220 4.220 5 S 0.315 5.685 6 C -0.297 4.297 7 C 0.299 3.701 8 O -0.423 6.423 9 N -0.348 5.348 10 C 0.129 3.871 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 N -0.138 5.138 20 N -0.099 5.099 21 C -0.056 4.056 22 C 0.067 3.933 23 C -0.148 4.148 24 C -0.097 4.097 25 C -0.186 4.186 26 C -0.052 4.052 27 N -0.190 5.190 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.228 0.772 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.813 -9.647 -30.426 32.146 hybrid contribution 0.610 1.720 -0.952 2.059 sum -3.203 -7.927 -31.378 32.522 Atomic orbital electron populations 1.22052 0.93341 1.03529 1.03095 1.22203 0.96474 0.77688 1.05881 1.46480 1.48543 1.14106 1.04012 1.27517 1.04679 0.92118 0.97669 1.86260 1.82375 1.17123 0.82780 1.23852 1.08102 1.00339 0.97440 1.19455 0.79202 0.85185 0.86277 1.90710 1.48188 1.26979 1.76458 1.46384 1.64276 1.14564 1.09622 1.19208 0.98026 0.97710 0.72182 1.21255 1.46511 0.98684 0.91856 0.91669 1.24950 0.94901 0.96974 0.97154 1.69981 1.46446 1.29724 1.06051 0.86339 0.78377 0.82638 0.79448 1.19574 1.20771 1.20776 1.74800 1.20373 1.16098 1.02544 1.74208 1.16353 1.16005 1.03382 1.22336 1.06090 0.89233 0.87927 1.18063 0.97079 0.90281 0.87908 1.22059 0.99245 1.01246 0.92258 1.21612 0.95394 0.96195 0.96448 1.22289 1.00273 0.94849 1.01229 1.22703 0.95637 1.00024 0.86849 1.67538 1.13195 1.15669 1.22621 0.91873 0.90024 0.91640 0.88687 0.86305 0.85943 0.85937 0.77177 0.95182 0.95179 0.92443 0.83237 0.83938 0.84249 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.10 0.92 6.23 -4.04 -0.03 0.90 16 3 N -0.44 -5.49 2.83 -114.09 -0.32 -5.82 16 4 C 0.15 2.20 8.07 -88.19 -0.71 1.49 16 5 S 0.09 1.25 20.93 -107.50 -2.25 -1.00 16 6 C -0.15 -2.16 5.71 36.00 0.21 -1.95 16 7 C 0.52 10.03 7.85 -10.99 -0.09 9.95 16 8 O -0.54 -12.56 15.86 5.55 0.09 -12.47 16 9 N -0.70 -14.39 5.55 -61.48 -0.34 -14.73 16 10 C 0.25 6.48 5.43 -5.20 -0.03 6.45 16 11 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 12 H 0.07 1.64 7.60 -52.48 -0.40 1.24 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 15 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 N -0.29 -4.61 11.59 30.71 0.36 -4.25 16 20 N -0.26 -3.85 11.86 32.59 0.39 -3.46 16 21 C 0.21 2.74 7.82 -153.71 -1.20 1.53 16 22 C 0.20 2.09 6.75 -83.02 -0.56 1.53 16 23 C -0.13 -1.03 9.74 -39.05 -0.38 -1.41 16 24 C -0.07 -0.37 10.16 -39.33 -0.40 -0.77 16 25 C -0.17 -0.73 10.11 -39.35 -0.40 -1.13 16 26 C 0.11 0.60 11.17 -17.58 -0.20 0.40 16 27 N -0.48 -4.14 7.83 -9.85 -0.08 -4.22 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 32 H 0.12 1.01 6.25 -51.93 -0.32 0.68 16 33 H 0.12 1.65 8.14 -51.91 -0.42 1.23 16 34 H 0.12 1.65 8.14 -51.91 -0.42 1.23 16 35 H 0.40 6.95 8.32 -40.82 -0.34 6.61 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.15 1.19 7.86 -52.49 -0.41 0.78 16 40 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 41 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16 42 H 0.16 0.44 8.06 -52.49 -0.42 0.01 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -34.55 381.96 -9.75 -44.30 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.25 Total: 2.43 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -3.82 Total: 2.78 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.74 Total: -57.54 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.25 Total: -1.00 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.55 -9.75 -44.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765350248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.091 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds