Wall clock time and date at job start Wed Apr 1 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36452 * 127.16134 * 90.02716 * 3 2 1 5 5 S 1.76197 * 126.37641 * 0.02562 * 4 3 2 6 6 C 1.81005 * 100.00227 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47494 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99629 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00403 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00537 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47495 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99756 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00088 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99998 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99695 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47222 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46965 * 119.99928 * 15 13 11 18 18 H 1.48497 * 109.46620 * 239.99650 * 15 13 11 19 19 N 1.31560 * 107.24797 * 180.02562 * 4 3 2 20 20 N 1.28511 * 110.06821 * 359.97438 * 19 4 3 21 21 C 1.31297 * 109.93877 * 359.72434 * 20 19 4 22 22 C 1.47752 * 126.46599 * 180.30427 * 21 20 19 23 23 C 1.39603 * 119.75326 * 0.15527 * 22 21 20 24 24 C 1.38308 * 119.04848 * 179.97438 * 23 22 21 25 25 C 1.38848 * 118.54054 * 0.02562 * 24 23 22 26 26 C 1.38257 * 119.41298 * 359.97438 * 25 24 23 27 27 N 1.31748 * 120.91841 * 359.73735 * 26 25 24 28 28 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 33 33 H 1.09003 * 109.46967 * 300.00031 * 6 5 4 34 34 H 1.09004 * 109.46832 * 59.99745 * 6 5 4 35 35 H 0.97006 * 119.99591 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.46896 * 300.00276 * 10 9 7 37 37 H 1.08997 * 109.46962 * 60.00208 * 10 9 7 38 38 H 0.97002 * 119.99799 * 180.02562 * 14 13 11 39 39 H 1.08001 * 120.47094 * 0.02562 * 23 22 21 40 40 H 1.08006 * 120.72665 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.29687 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.54171 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2935 2.1582 1.0874 5 16 2.1284 1.6869 2.7772 6 6 2.6692 3.2144 3.5838 7 6 2.6087 3.0413 5.0796 8 8 2.2370 1.9886 5.5536 9 7 2.9686 4.0558 5.8905 10 6 2.9103 3.8873 7.3446 11 6 3.3605 5.1591 8.0161 12 1 3.6605 6.0079 7.4194 13 6 3.3904 5.2387 9.3923 14 7 3.0257 4.2050 10.1189 15 14 3.9491 6.8150 10.2246 16 1 4.3044 7.8211 9.1918 17 1 2.8508 7.3428 11.0733 18 1 5.1369 6.5339 11.0705 19 7 2.7050 3.3247 0.6393 20 7 2.7058 3.3281 -0.6458 21 6 2.3009 2.1634 -1.0968 22 6 2.1697 1.7681 -2.5144 23 6 2.4965 2.6788 -3.5207 24 6 2.3688 2.2932 -4.8428 25 6 1.9178 1.0093 -5.1188 26 6 1.6116 0.1579 -4.0734 27 7 1.7469 0.5466 -2.8219 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.6928 3.4403 3.2849 34 1 2.0146 4.0337 3.2864 35 1 3.2663 4.8976 5.5113 36 1 1.8866 3.6617 7.6435 37 1 3.5646 3.0678 7.6419 38 1 3.0464 4.2612 11.0871 39 1 2.8449 3.6699 -3.2704 40 1 2.6145 2.9758 -5.6430 41 1 1.8079 0.6784 -6.1410 42 1 1.2603 -0.8410 -4.2857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765350248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:04 Heat of formation + Delta-G solvation = 53.759018 kcal Electronic energy + Delta-G solvation = -26084.205264 eV Core-core repulsion = 22191.069084 eV Total energy + Delta-G solvation = -3893.136181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.01066 -40.96342 -40.58934 -36.86029 -36.23440 -34.43303 -33.80681 -33.41259 -31.75087 -31.65467 -30.57703 -28.78211 -25.94614 -25.02933 -24.69512 -24.46522 -23.29444 -22.21725 -21.59955 -19.47492 -18.81380 -18.06037 -17.75633 -17.61264 -17.37915 -17.08584 -16.78364 -16.70691 -16.64573 -16.00102 -15.35681 -15.24605 -15.00908 -14.84046 -14.62741 -14.41165 -14.19788 -14.04757 -14.00895 -13.54473 -13.45307 -12.91676 -12.90381 -12.75473 -12.65292 -12.47493 -12.23512 -12.07941 -11.66692 -11.52530 -11.46427 -11.41630 -11.08393 -10.90663 -10.83104 -10.58028 -10.00160 -9.90698 -8.76546 -8.29822 -6.45828 -0.48456 -0.25206 0.27034 0.70014 0.77152 1.42261 1.44286 1.44484 1.52248 1.55836 1.58266 2.27168 2.47044 2.62192 2.83131 3.05606 3.43572 3.57576 3.72142 3.89476 3.94839 3.98297 4.03816 4.06839 4.12506 4.24733 4.29095 4.39359 4.47381 4.56677 4.74970 4.80773 4.97852 5.07937 5.10869 5.13408 5.22163 5.22948 5.41719 5.53332 5.61359 5.68419 5.82500 6.62866 6.72170 6.76851 7.18626 7.29840 7.32975 8.82345 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.028825 B = 0.001810 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.137555 B =15461.661718 C =16319.031000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.095 3.905 3 N -0.439 5.439 4 C 0.144 3.856 5 S 0.086 5.914 6 C -0.132 4.132 7 C 0.519 3.481 8 O -0.582 6.582 9 N -0.696 5.696 10 C 0.266 3.734 11 C -0.557 4.557 12 H 0.084 0.916 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.983 3.017 16 H -0.255 1.255 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.315 5.315 20 N -0.290 5.290 21 C 0.222 3.778 22 C 0.167 3.833 23 C -0.135 4.135 24 C -0.070 4.070 25 C -0.146 4.146 26 C 0.099 3.901 27 N -0.492 5.492 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.412 0.588 36 H -0.005 1.005 37 H -0.005 1.005 38 H 0.269 0.731 39 H 0.141 0.859 40 H 0.172 0.828 41 H 0.178 0.822 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -8.343 -35.515 36.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.026 4.026 3 N -0.131 5.131 4 C -0.231 4.231 5 S 0.313 5.687 6 C -0.284 4.284 7 C 0.304 3.696 8 O -0.464 6.464 9 N -0.345 5.345 10 C 0.143 3.857 11 C -0.595 4.595 12 H 0.102 0.898 13 C -0.194 4.194 14 N -0.567 5.567 15 Si 0.807 3.193 16 H -0.178 1.178 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.161 5.161 20 N -0.132 5.132 21 C -0.046 4.046 22 C 0.030 3.970 23 C -0.157 4.157 24 C -0.095 4.095 25 C -0.166 4.166 26 C -0.060 4.060 27 N -0.204 5.204 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.248 0.752 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.190 0.810 41 H 0.195 0.805 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.681 -9.336 -33.758 35.218 hybrid contribution 0.518 1.473 -0.193 1.573 sum -3.163 -7.863 -33.951 34.993 Atomic orbital electron populations 1.22007 0.92415 1.04851 1.01916 1.22455 0.97180 0.76324 1.06608 1.46721 1.48073 1.14889 1.03388 1.27361 1.05593 0.92394 0.97760 1.86241 1.82776 1.16546 0.83110 1.23653 1.09799 1.01457 0.93491 1.20069 0.77478 0.83971 0.88074 1.90692 1.49499 1.28482 1.77740 1.46081 1.64829 1.15901 1.07728 1.18657 0.95010 0.96718 0.75327 1.21648 1.46201 0.99169 0.92479 0.89797 1.26017 0.94721 1.00667 0.98007 1.70130 1.47731 1.32330 1.06519 0.85128 0.77729 0.78125 0.78345 1.17825 1.20453 1.20464 1.74682 1.21188 1.17014 1.03247 1.74123 1.18491 1.17498 1.03133 1.22933 1.03789 0.88541 0.89293 1.18043 1.00357 0.91846 0.86753 1.22146 0.99453 1.00742 0.93355 1.21999 0.94505 0.97272 0.95735 1.22759 0.97310 0.93822 1.02751 1.23353 0.94967 1.01572 0.86107 1.67471 1.13433 1.14981 1.24468 0.92612 0.87418 0.93113 0.88202 0.85234 0.84102 0.84124 0.75178 0.98723 0.98718 0.92215 0.84064 0.81007 0.80475 0.78940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.24 71.98 0.74 -1.68 16 2 C 0.09 1.72 6.23 86.38 0.54 2.25 16 3 N -0.44 -11.06 2.83 -514.87 -1.46 -12.52 16 4 C 0.14 4.17 8.07 179.50 1.45 5.62 16 5 S 0.09 2.51 20.93 -56.49 -1.18 1.32 16 6 C -0.13 -3.91 5.71 71.23 0.41 -3.51 16 7 C 0.52 20.56 7.85 87.66 0.69 21.25 16 8 O -0.58 -27.88 15.86 -3.04 -0.05 -27.93 16 9 N -0.70 -29.07 5.55 -466.81 -2.59 -31.66 16 10 C 0.27 14.35 5.43 85.63 0.46 14.82 16 11 C -0.56 -30.11 9.28 25.60 0.24 -29.87 16 12 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 13 C 0.01 0.32 5.46 84.66 0.46 0.78 16 14 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 15 Si 0.98 42.40 29.54 68.60 2.03 44.42 16 16 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 N -0.32 -10.15 11.59 -56.76 -0.66 -10.81 16 20 N -0.29 -8.96 11.86 -50.80 -0.60 -9.56 16 21 C 0.22 5.86 7.82 136.15 1.07 6.92 16 22 C 0.17 3.33 6.75 41.83 0.28 3.61 16 23 C -0.13 -2.07 9.74 22.62 0.22 -1.85 16 24 C -0.07 -0.53 10.16 22.43 0.23 -0.30 16 25 C -0.15 -0.69 10.11 22.42 0.23 -0.47 16 26 C 0.10 0.80 11.17 84.71 0.95 1.74 16 27 N -0.49 -7.72 7.83 -185.07 -1.45 -9.16 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.69 7.85 -2.39 -0.02 1.67 16 32 H 0.13 2.06 6.25 -2.39 -0.01 2.05 16 33 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 34 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 35 H 0.41 14.30 8.32 -92.70 -0.77 13.53 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.14 2.30 7.86 -2.91 -0.02 2.27 16 40 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 41 H 0.18 -0.47 8.06 -2.91 -0.02 -0.49 16 42 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -78.73 381.96 2.57 -76.16 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.29 Total: 15.68 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 7.95 Total: 19.31 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -6.47 Total: -128.98 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.18 Total: 1.32 kcal Total: -78.73 2.57 -76.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765350248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.924 kcal (2) G-P(sol) polarization free energy of solvation -78.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds