Wall clock time and date at job start Wed Apr 1 2020 04:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30886 * 122.99078 * 2 1 4 4 C 1.30232 * 117.26790 * 180.02562 * 3 2 1 5 5 N 1.37840 * 124.74666 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00031 * 179.97438 * 5 4 3 7 7 C 1.52999 * 117.50265 * 223.62113 * 6 5 4 8 8 C 1.53000 * 60.00226 * 252.50939 * 7 6 5 9 9 S 1.70921 * 110.50359 * 359.72257 * 4 3 2 10 10 C 1.36726 * 122.99044 * 180.02562 * 2 1 3 11 11 C 1.46204 * 126.10630 * 359.97438 * 10 2 1 12 12 O 1.21762 * 120.00197 * 359.97438 * 11 10 2 13 13 N 1.34782 * 120.00063 * 180.02562 * 11 10 2 14 14 C 1.40083 * 120.00242 * 180.02562 * 13 11 10 15 15 C 1.40432 * 125.97251 * 0.02562 * 14 13 11 16 16 C 1.35240 * 107.86481 * 179.72675 * 15 14 13 17 17 N 1.34972 * 107.86433 * 0.39133 * 16 15 14 18 18 C 1.46495 * 125.97661 * 179.87358 * 17 16 15 19 19 C 1.50702 * 109.47571 * 124.71645 * 18 17 16 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 N 1.31225 * 125.98066 * 179.97438 * 14 13 11 28 28 H 1.08994 * 109.47407 * 269.97908 * 1 2 3 29 29 H 1.09007 * 109.46957 * 29.97944 * 1 2 3 30 30 H 1.09001 * 109.47240 * 149.98008 * 1 2 3 31 31 H 0.97001 * 119.99805 * 359.97438 * 5 4 3 32 32 H 1.09005 * 115.54963 * 9.33394 * 6 5 4 33 33 H 1.09004 * 117.49589 * 0.02562 * 7 6 5 34 34 H 1.08997 * 117.49840 * 145.02192 * 7 6 5 35 35 H 1.08998 * 117.49846 * 252.50900 * 8 7 6 36 36 H 1.09006 * 117.49636 * 107.48304 * 8 7 6 37 37 H 0.96996 * 119.99914 * 359.97438 * 13 11 10 38 38 H 1.07992 * 126.06683 * 359.97129 * 15 14 13 39 39 H 1.07994 * 126.06858 * 180.26769 * 16 15 14 40 40 H 1.09000 * 109.47378 * 4.71304 * 18 17 16 41 41 H 1.09001 * 109.47153 * 244.71425 * 18 17 16 42 42 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2196 1.0978 0.0000 4 6 3.5154 0.9680 -0.0005 5 7 4.4101 2.0166 -0.0011 6 6 5.8507 1.7504 -0.0011 7 6 6.7240 2.5885 0.9347 8 6 6.7689 2.8312 -0.5753 9 16 3.9515 -0.6847 0.0067 10 6 2.2514 -1.1468 -0.0005 11 6 1.7298 -2.5126 -0.0006 12 8 0.5275 -2.7052 0.0003 13 7 2.5797 -3.5587 -0.0006 14 6 2.0800 -4.8673 -0.0012 15 6 0.7240 -5.2324 -0.0024 16 6 0.6580 -6.5832 -0.0088 17 7 1.9209 -7.0594 -0.0028 18 6 2.3079 -8.4723 -0.0040 19 6 3.2276 -8.7404 -1.1674 20 1 3.4966 -7.9385 -1.8390 21 6 3.7248 -10.0095 -1.3749 22 7 4.5230 -10.2446 -2.3934 23 14 3.2590 -11.3966 -0.2137 24 1 4.2452 -11.4667 0.8943 25 1 1.9060 -11.1428 0.3431 26 1 3.2556 -12.6831 -0.9555 27 7 2.7969 -5.9664 -0.0018 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 4.0858 2.9308 -0.0015 32 1 6.1366 0.7106 -0.1601 33 1 6.2266 3.3378 1.5506 34 1 7.5847 2.1002 1.3916 35 1 7.6590 2.5025 -1.1116 36 1 6.3010 3.7404 -0.9530 37 1 3.5375 -3.4053 -0.0009 38 1 -0.1169 -4.5548 -0.0025 39 1 -0.2448 -7.1757 -0.0153 40 1 1.4166 -9.0931 -0.0949 41 1 2.8221 -8.7090 0.9275 42 1 4.8696 -11.1383 -2.5417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771018624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:00 Heat of formation + Delta-G solvation = 132.851053 kcal Electronic energy + Delta-G solvation = -26249.824040 eV Core-core repulsion = 22360.117547 eV Total energy + Delta-G solvation = -3889.706493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.79307 -40.24898 -39.11679 -38.32942 -34.83084 -34.31040 -33.28423 -31.38566 -30.69969 -29.43558 -28.56397 -26.93289 -24.37819 -23.40567 -23.04119 -22.71526 -22.02213 -20.70584 -19.83784 -19.54750 -18.62059 -17.36855 -16.98802 -16.80353 -16.31205 -15.83786 -15.76223 -15.29426 -15.05232 -14.86874 -14.33613 -14.15456 -13.88857 -13.58229 -13.34294 -13.22634 -13.06014 -12.60857 -12.54999 -12.35491 -12.22747 -12.07044 -12.03145 -11.51411 -11.16616 -11.15928 -10.87943 -10.51954 -10.22702 -10.17818 -10.04771 -9.94760 -9.61615 -9.51923 -9.50171 -8.75970 -8.20596 -8.04775 -7.49766 -6.22666 -4.24906 0.24959 0.70603 1.37826 2.25398 2.25888 2.66869 2.75364 3.07529 3.16985 3.18999 3.21970 3.25010 3.77072 3.82442 4.03702 4.15759 4.23521 4.23742 4.27258 4.79710 4.91280 4.99515 5.00708 5.05349 5.25622 5.43071 5.47554 5.56190 5.60345 5.69941 5.72730 6.07715 6.14052 6.25462 6.40460 6.45692 6.57528 6.66323 6.72261 7.25514 7.34091 7.50144 7.59593 7.82875 8.22253 8.34424 8.56977 8.87323 9.32276 10.90030 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.002208 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.444491 B =12680.300267 C =14241.103082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.210 3.790 3 N -0.554 5.554 4 C 0.332 3.668 5 N -0.655 5.655 6 C 0.073 3.927 7 C -0.186 4.186 8 C -0.180 4.180 9 S 0.143 5.857 10 C -0.347 4.347 11 C 0.613 3.387 12 O -0.509 6.509 13 N -0.628 5.628 14 C 0.263 3.737 15 C -0.281 4.281 16 C 0.052 3.948 17 N -0.319 5.319 18 C 0.232 3.768 19 C -0.534 4.534 20 H 0.086 0.914 21 C 0.076 3.924 22 N -0.888 5.888 23 Si 0.874 3.126 24 H -0.272 1.272 25 H -0.265 1.265 26 H -0.281 1.281 27 N -0.297 5.297 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.415 0.585 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.407 0.593 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 26.546 6.607 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 N -0.279 5.279 4 C -0.037 4.037 5 N -0.291 5.291 6 C -0.034 4.034 7 C -0.225 4.225 8 C -0.218 4.218 9 S 0.392 5.608 10 C -0.473 4.473 11 C 0.400 3.600 12 O -0.385 6.385 13 N -0.275 5.275 14 C 0.010 3.990 15 C -0.312 4.312 16 C -0.097 4.097 17 N -0.101 5.101 18 C 0.113 3.887 19 C -0.572 4.572 20 H 0.104 0.896 21 C -0.128 4.128 22 N -0.525 5.525 23 Si 0.701 3.299 24 H -0.197 1.197 25 H -0.189 1.189 26 H -0.206 1.206 27 N -0.128 5.128 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.254 0.746 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.242 0.758 38 H 0.181 0.819 39 H 0.187 0.813 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.941 25.592 6.516 26.480 hybrid contribution -1.183 0.037 0.435 1.261 sum 0.758 25.629 6.951 26.566 Atomic orbital electron populations 1.20709 0.85804 1.04637 1.03862 1.20524 0.97891 0.84000 0.90489 1.66080 1.02047 1.31786 1.27956 1.23579 0.90608 0.93371 0.96117 1.43191 1.02275 1.05944 1.77705 1.21735 0.77256 0.98140 1.06279 1.23538 1.02339 1.03310 0.93346 1.23455 1.01583 1.00177 0.96613 1.83829 1.06537 0.97974 1.72412 1.24834 0.94540 0.97920 1.29987 1.16322 0.85715 0.81764 0.76180 1.90719 1.14096 1.84183 1.49551 1.42272 1.09915 1.02283 1.72995 1.19029 0.92350 0.84458 1.03212 1.21555 0.96017 0.94193 1.19481 1.22560 0.89807 0.94875 1.02502 1.48616 1.02432 1.06395 1.52617 1.20057 0.97827 0.71570 0.99266 1.21113 1.28283 0.97114 1.10697 0.89634 1.24836 0.94419 0.98227 0.95312 1.69874 1.32011 1.22070 1.28558 0.86887 0.79579 0.82162 0.81307 1.19718 1.18945 1.20606 1.77397 1.16281 0.91416 1.27695 0.89821 0.90786 0.87758 0.74607 0.84842 0.87973 0.87251 0.87118 0.87945 0.75810 0.81914 0.81329 0.92860 0.94461 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.71 36.00 0.35 -0.66 16 2 C 0.21 2.66 6.83 -83.54 -0.57 2.09 16 3 N -0.55 -6.59 10.54 -10.94 -0.12 -6.71 16 4 C 0.33 3.33 8.21 -87.98 -0.72 2.60 16 5 N -0.65 -4.52 5.69 -55.89 -0.32 -4.83 16 6 C 0.07 0.37 6.43 -67.93 -0.44 -0.07 16 7 C -0.19 -0.68 10.46 -26.73 -0.28 -0.96 16 8 C -0.18 -0.62 10.46 -26.73 -0.28 -0.90 16 9 S 0.14 1.45 20.69 -107.50 -2.22 -0.77 16 10 C -0.35 -4.60 6.49 -36.93 -0.24 -4.84 16 11 C 0.61 9.72 7.73 -13.06 -0.10 9.62 16 12 O -0.51 -8.84 11.42 5.13 0.06 -8.78 16 13 N -0.63 -10.54 5.44 -12.45 -0.07 -10.61 16 14 C 0.26 5.37 8.11 -154.45 -1.25 4.12 16 15 C -0.28 -5.49 9.61 -39.82 -0.38 -5.87 16 16 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 17 N -0.32 -7.26 3.67 -62.56 -0.23 -7.49 16 18 C 0.23 5.50 5.33 -5.20 -0.03 5.48 16 19 C -0.53 -15.09 9.79 -34.44 -0.34 -15.43 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 22 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 23 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 N -0.30 -6.90 12.42 31.43 0.39 -6.51 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.29 6.04 -51.93 -0.31 0.97 16 31 H 0.42 2.35 8.95 -40.82 -0.37 1.99 16 32 H 0.13 0.68 6.90 -51.93 -0.36 0.33 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.41 5.98 7.99 -40.82 -0.33 5.65 16 38 H 0.16 3.03 5.90 -52.49 -0.31 2.72 16 39 H 0.17 2.57 8.06 -52.49 -0.42 2.14 16 40 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 41 H 0.04 0.87 7.57 -51.93 -0.39 0.48 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -34.42 371.83 -10.36 -44.77 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.99 Total: 7.66 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -4.57 Total: -1.98 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.43 Total: -62.00 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.22 Total: -0.77 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.42 -10.36 -44.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771018624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.626 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds