Wall clock time and date at job start Wed Apr 1 2020 04:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30886 * 122.99078 * 2 1 4 4 C 1.30232 * 117.26790 * 180.02562 * 3 2 1 5 5 N 1.37840 * 124.74666 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00031 * 179.97438 * 5 4 3 7 7 C 1.52999 * 117.50265 * 223.62113 * 6 5 4 8 8 C 1.53000 * 60.00226 * 252.50939 * 7 6 5 9 9 S 1.70921 * 110.50359 * 359.72257 * 4 3 2 10 10 C 1.36726 * 122.99044 * 180.02562 * 2 1 3 11 11 C 1.46204 * 126.10630 * 359.97438 * 10 2 1 12 12 O 1.21762 * 120.00197 * 359.97438 * 11 10 2 13 13 N 1.34782 * 120.00063 * 180.02562 * 11 10 2 14 14 C 1.40083 * 120.00242 * 180.02562 * 13 11 10 15 15 C 1.40432 * 125.97251 * 0.02562 * 14 13 11 16 16 C 1.35240 * 107.86481 * 179.72675 * 15 14 13 17 17 N 1.34972 * 107.86433 * 0.39133 * 16 15 14 18 18 C 1.46495 * 125.97661 * 179.87358 * 17 16 15 19 19 C 1.50702 * 109.47571 * 124.71645 * 18 17 16 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 N 1.31225 * 125.98066 * 179.97438 * 14 13 11 28 28 H 1.08994 * 109.47407 * 269.97908 * 1 2 3 29 29 H 1.09007 * 109.46957 * 29.97944 * 1 2 3 30 30 H 1.09001 * 109.47240 * 149.98008 * 1 2 3 31 31 H 0.97001 * 119.99805 * 359.97438 * 5 4 3 32 32 H 1.09005 * 115.54963 * 9.33394 * 6 5 4 33 33 H 1.09004 * 117.49589 * 0.02562 * 7 6 5 34 34 H 1.08997 * 117.49840 * 145.02192 * 7 6 5 35 35 H 1.08998 * 117.49846 * 252.50900 * 8 7 6 36 36 H 1.09006 * 117.49636 * 107.48304 * 8 7 6 37 37 H 0.96996 * 119.99914 * 359.97438 * 13 11 10 38 38 H 1.07992 * 126.06683 * 359.97129 * 15 14 13 39 39 H 1.07994 * 126.06858 * 180.26769 * 16 15 14 40 40 H 1.09000 * 109.47378 * 4.71304 * 18 17 16 41 41 H 1.09001 * 109.47153 * 244.71425 * 18 17 16 42 42 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2196 1.0978 0.0000 4 6 3.5154 0.9680 -0.0005 5 7 4.4101 2.0166 -0.0011 6 6 5.8507 1.7504 -0.0011 7 6 6.7240 2.5885 0.9347 8 6 6.7689 2.8312 -0.5753 9 16 3.9515 -0.6847 0.0067 10 6 2.2514 -1.1468 -0.0005 11 6 1.7298 -2.5126 -0.0006 12 8 0.5275 -2.7052 0.0003 13 7 2.5797 -3.5587 -0.0006 14 6 2.0800 -4.8673 -0.0012 15 6 0.7240 -5.2324 -0.0024 16 6 0.6580 -6.5832 -0.0088 17 7 1.9209 -7.0594 -0.0028 18 6 2.3079 -8.4723 -0.0040 19 6 3.2276 -8.7404 -1.1674 20 1 3.4966 -7.9385 -1.8390 21 6 3.7248 -10.0095 -1.3749 22 7 4.5230 -10.2446 -2.3934 23 14 3.2590 -11.3966 -0.2137 24 1 4.2452 -11.4667 0.8943 25 1 1.9060 -11.1428 0.3431 26 1 3.2556 -12.6831 -0.9555 27 7 2.7969 -5.9664 -0.0018 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 4.0858 2.9308 -0.0015 32 1 6.1366 0.7106 -0.1601 33 1 6.2266 3.3378 1.5506 34 1 7.5847 2.1002 1.3916 35 1 7.6590 2.5025 -1.1116 36 1 6.3010 3.7404 -0.9530 37 1 3.5375 -3.4053 -0.0009 38 1 -0.1169 -4.5548 -0.0025 39 1 -0.2448 -7.1757 -0.0153 40 1 1.4166 -9.0931 -0.0949 41 1 2.8221 -8.7090 0.9275 42 1 4.8696 -11.1383 -2.5417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771018624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:59 Heat of formation + Delta-G solvation = 109.548094 kcal Electronic energy + Delta-G solvation = -26250.834533 eV Core-core repulsion = 22360.117547 eV Total energy + Delta-G solvation = -3890.716985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25750 -41.26990 -40.22517 -38.93501 -36.27773 -35.20900 -34.98224 -33.17963 -31.56313 -31.01950 -29.78740 -28.59221 -25.21242 -24.82701 -23.77767 -23.32308 -23.14914 -22.14396 -21.29125 -20.52993 -19.55479 -19.09383 -18.47502 -17.75731 -17.60473 -16.82424 -16.79132 -16.61406 -16.27540 -15.84333 -15.62329 -15.28525 -15.17196 -14.81737 -14.65655 -14.41849 -14.06720 -13.86703 -13.80519 -13.77067 -13.43716 -12.98400 -12.72860 -12.64498 -12.44776 -12.33313 -12.18484 -11.81510 -11.66126 -11.54621 -11.46762 -11.09941 -10.93434 -10.86760 -10.77295 -10.32577 -9.78245 -9.15490 -8.77701 -8.36500 -6.46832 -0.66810 -0.12228 0.49716 0.98928 1.28008 1.38734 1.39577 1.42137 1.50295 1.63250 1.82392 2.29700 2.33629 2.36660 2.83220 2.96096 3.39771 3.64668 3.66069 3.88280 3.93162 3.96536 4.06485 4.21529 4.45791 4.59624 4.71545 4.74508 4.75629 4.78247 4.86019 4.89055 4.91745 4.99955 5.10382 5.17576 5.25484 5.35951 5.47034 5.85726 6.01517 6.08320 6.14853 6.42087 6.59043 6.67855 6.93418 7.01955 7.16013 8.80587 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.002208 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.444491 B =12680.300267 C =14241.103082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.217 3.783 3 N -0.572 5.572 4 C 0.336 3.664 5 N -0.637 5.637 6 C 0.045 3.955 7 C -0.176 4.176 8 C -0.166 4.166 9 S 0.171 5.829 10 C -0.384 4.384 11 C 0.614 3.386 12 O -0.529 6.529 13 N -0.628 5.628 14 C 0.267 3.733 15 C -0.291 4.291 16 C 0.063 3.937 17 N -0.343 5.343 18 C 0.239 3.761 19 C -0.546 4.546 20 H 0.025 0.975 21 C 0.013 3.987 22 N -0.943 5.943 23 Si 0.956 3.044 24 H -0.266 1.266 25 H -0.229 1.229 26 H -0.278 1.278 27 N -0.349 5.349 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.423 0.577 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.413 0.587 38 H 0.173 0.827 39 H 0.213 0.787 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 27.470 8.262 28.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 N -0.299 5.299 4 C -0.033 4.033 5 N -0.273 5.273 6 C -0.061 4.061 7 C -0.215 4.215 8 C -0.205 4.205 9 S 0.421 5.579 10 C -0.510 4.510 11 C 0.404 3.596 12 O -0.407 6.407 13 N -0.276 5.276 14 C 0.012 3.988 15 C -0.322 4.322 16 C -0.085 4.085 17 N -0.125 5.125 18 C 0.119 3.881 19 C -0.585 4.585 20 H 0.044 0.956 21 C -0.185 4.185 22 N -0.581 5.581 23 Si 0.777 3.223 24 H -0.191 1.191 25 H -0.151 1.151 26 H -0.204 1.204 27 N -0.180 5.180 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.263 0.737 32 H 0.150 0.850 33 H 0.125 0.875 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.250 0.750 38 H 0.190 0.810 39 H 0.230 0.770 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.400 26.601 8.176 27.865 hybrid contribution -0.873 0.070 -0.157 0.890 sum 0.527 26.672 8.019 27.856 Atomic orbital electron populations 1.20704 0.85165 1.04588 1.04336 1.20785 0.98607 0.84067 0.88979 1.66157 1.02721 1.31366 1.29626 1.23834 0.90656 0.94187 0.94611 1.43416 1.02768 1.05665 1.75425 1.21999 0.76289 0.98915 1.08899 1.23608 1.01758 1.02526 0.93628 1.23550 1.00966 0.99357 0.96611 1.83660 1.04112 0.97563 1.72567 1.24590 0.96654 0.96572 1.33216 1.16655 0.85418 0.82338 0.75236 1.90682 1.14843 1.84691 1.50460 1.42396 1.10582 1.01324 1.73278 1.19390 0.92862 0.85175 1.01363 1.21788 0.95868 0.94694 1.19824 1.23274 0.89914 0.95217 1.00083 1.48525 1.03507 1.05957 1.54504 1.19918 0.98002 0.72931 0.97249 1.21233 1.29741 0.95927 1.11557 0.95622 1.25934 0.93876 1.01482 0.97236 1.70053 1.33756 1.23163 1.31168 0.85610 0.81065 0.77253 0.78399 1.19063 1.15131 1.20370 1.77312 1.17903 0.92462 1.30275 0.88993 0.89285 0.89216 0.73704 0.85009 0.87539 0.86347 0.86115 0.87174 0.75022 0.80986 0.77014 0.89740 0.93718 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 9.71 71.23 0.69 -1.25 16 2 C 0.22 5.42 6.83 42.34 0.29 5.71 16 3 N -0.57 -13.10 10.54 -188.51 -1.99 -15.09 16 4 C 0.34 6.36 8.21 179.43 1.47 7.83 16 5 N -0.64 -7.67 5.69 -330.72 -1.88 -9.55 16 6 C 0.04 0.37 6.43 44.99 0.29 0.66 16 7 C -0.18 -0.86 10.46 30.59 0.32 -0.54 16 8 C -0.17 -0.72 10.46 30.60 0.32 -0.40 16 9 S 0.17 3.41 20.69 -56.49 -1.17 2.24 16 10 C -0.38 -10.26 6.49 23.99 0.16 -10.10 16 11 C 0.61 19.87 7.73 86.31 0.67 20.54 16 12 O -0.53 -18.65 11.42 -4.55 -0.05 -18.70 16 13 N -0.63 -21.71 5.44 -311.48 -1.70 -23.40 16 14 C 0.27 11.12 8.11 133.36 1.08 12.20 16 15 C -0.29 -11.27 9.61 22.11 0.21 -11.06 16 16 C 0.06 2.35 11.44 83.52 0.96 3.31 16 17 N -0.34 -15.59 3.67 -351.85 -1.29 -16.88 16 18 C 0.24 11.11 5.33 85.63 0.46 11.56 16 19 C -0.55 -31.77 9.79 25.60 0.25 -31.52 16 20 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 21 C 0.01 0.76 5.47 84.65 0.46 1.23 16 22 N -0.94 -58.37 13.96 21.45 0.30 -58.07 16 23 Si 0.96 40.81 27.47 68.60 1.88 42.69 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.23 -8.39 6.54 99.48 0.65 -7.74 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 27 N -0.35 -16.69 12.42 -54.48 -0.68 -17.37 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.09 2.25 6.04 -2.39 -0.01 2.23 16 31 H 0.42 3.91 8.95 -92.71 -0.83 3.09 16 32 H 0.13 1.16 6.90 -2.38 -0.02 1.15 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.41 12.66 7.99 -92.71 -0.74 11.92 16 38 H 0.17 6.32 5.90 -2.91 -0.02 6.30 16 39 H 0.21 5.73 8.06 -2.91 -0.02 5.71 16 40 H 0.08 3.40 7.12 -2.39 -0.02 3.38 16 41 H 0.04 2.01 7.57 -2.39 -0.02 1.99 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -78.49 371.83 0.53 -77.96 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.52 Total: 28.01 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 7.62 Total: 8.16 kcal Atomic # 7 Polarization: -133.13 SS G_CDS: -7.23 Total: -140.36 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.88 Total: 42.69 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.17 Total: 2.24 kcal Total: -78.49 0.53 -77.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771018624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.508 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds