Wall clock time and date at job start Wed Apr 1 2020 05:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47233 * 2 1 4 4 C 1.46499 * 119.99769 * 269.99556 * 3 2 1 5 5 C 1.50701 * 109.47532 * 269.99804 * 4 3 2 6 6 H 1.08000 * 119.99825 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00405 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99575 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00016 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47275 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46953 * 120.00483 * 9 7 5 12 12 H 1.48501 * 109.46846 * 240.00083 * 9 7 5 13 13 C 1.34777 * 120.00103 * 90.00129 * 3 2 1 14 14 O 1.21282 * 119.99987 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99755 * 359.97438 * 13 3 2 16 16 O 1.45209 * 109.47013 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99950 * 180.02562 * 16 15 13 18 18 O 1.20825 * 119.99797 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99638 * 179.97438 * 17 16 15 20 20 S 1.81401 * 112.85059 * 34.60828 * 19 17 16 21 21 C 1.81404 * 101.91936 * 58.80136 * 20 19 17 22 22 O 1.42097 * 108.57405 * 173.28918 * 20 19 17 23 23 O 1.42101 * 108.57751 * 304.31496 * 20 19 17 24 24 C 1.53782 * 113.61306 * 263.29837 * 19 17 16 25 25 C 1.53777 * 87.08254 * 270.88522 * 24 19 17 26 26 C 1.53780 * 87.08560 * 334.57034 * 25 24 19 27 27 H 1.08997 * 109.47121 * 300.00737 * 1 2 3 28 28 H 1.09005 * 109.46544 * 60.00275 * 1 2 3 29 29 H 1.08996 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47470 * 239.99687 * 2 1 3 31 31 H 1.08999 * 109.47196 * 119.99857 * 2 1 3 32 32 H 1.09002 * 109.47191 * 30.00286 * 4 3 2 33 33 H 1.09007 * 109.46753 * 150.00231 * 4 3 2 34 34 H 0.97001 * 119.99700 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47744 * 300.00253 * 15 13 3 36 36 H 1.08996 * 109.47511 * 60.00611 * 15 13 3 37 37 H 1.09005 * 109.47229 * 64.52621 * 21 20 19 38 38 H 1.09004 * 109.47036 * 184.52010 * 21 20 19 39 39 H 1.09001 * 109.47240 * 304.52425 * 21 20 19 40 40 H 1.09002 * 113.61427 * 25.43673 * 24 19 17 41 41 H 1.09000 * 113.61291 * 156.34100 * 24 19 17 42 42 H 1.08995 * 113.61827 * 220.01459 * 25 24 19 43 43 H 1.09002 * 113.61301 * 89.11869 * 25 24 19 44 44 H 1.08997 * 113.61371 * 270.88369 * 26 25 24 45 45 H 1.08995 * 113.61657 * 139.97745 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0961 7 6 4.1496 2.3904 -2.8774 8 7 3.3498 3.1272 -3.6171 9 14 5.9136 2.0962 -3.4169 10 1 6.6005 1.2393 -2.4175 11 1 5.9206 1.4181 -4.7380 12 1 6.6217 3.3971 -3.5244 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3054 2.1961 3.5760 17 6 2.1344 1.7124 4.8163 18 8 1.7359 0.5828 4.9746 19 6 2.4405 2.5779 6.0114 20 16 2.0523 4.3277 5.7319 21 6 0.2804 4.2618 5.3486 22 8 2.2252 5.0306 6.9547 23 8 2.7498 4.7669 4.5744 24 6 3.8415 2.3422 6.6000 25 6 3.2022 1.2572 7.4826 26 6 1.8786 2.0255 7.3321 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6761 3.5183 -4.4427 35 1 0.9432 1.0125 2.5299 36 1 2.6211 0.4187 2.5303 37 1 -0.2675 3.9092 6.2225 38 1 -0.0700 5.2577 5.0776 39 1 0.1140 3.5788 4.5156 40 1 4.5584 1.9513 5.8779 41 1 4.2271 3.1919 7.1633 42 1 3.5852 1.2427 8.5030 43 1 3.1891 0.2701 7.0204 44 1 1.7276 2.7887 8.0955 45 1 1.0110 1.3790 7.2010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796186426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:57 Heat of formation + Delta-G solvation = -148.464392 kcal Electronic energy + Delta-G solvation = -29931.329439 eV Core-core repulsion = 25657.529771 eV Total energy + Delta-G solvation = -4273.799668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35262 -39.36518 -38.42481 -37.12086 -36.45764 -36.19107 -35.33103 -32.85186 -30.25327 -30.07752 -29.51011 -27.71079 -26.40987 -26.29852 -23.19515 -23.03566 -22.21946 -20.17756 -19.50316 -18.70161 -18.28654 -17.15030 -17.06792 -16.50781 -16.47078 -16.28677 -16.11452 -15.78657 -15.39440 -14.93729 -14.56657 -14.27230 -13.69826 -13.61047 -13.49324 -13.44313 -13.24220 -13.03591 -12.97853 -12.78755 -12.58518 -12.27481 -12.14980 -12.14097 -12.08795 -11.71932 -11.58415 -11.28684 -11.26145 -11.10681 -11.01492 -10.92839 -10.84549 -10.70367 -10.57181 -10.33952 -10.15008 -9.64910 -9.01257 -8.45004 -7.76910 -6.06096 -4.10789 -0.37057 1.65591 1.95750 2.39104 3.20415 3.22363 3.30018 3.33476 3.38251 3.42171 3.71208 3.76725 4.00245 4.18058 4.34395 4.44575 4.55425 4.66051 4.77237 4.82195 5.00389 5.01275 5.08388 5.15952 5.28161 5.29568 5.33955 5.37950 5.41637 5.48319 5.52823 5.66625 5.77558 5.92350 6.05642 6.14632 6.38982 6.96216 7.28991 7.38848 7.47131 7.90012 8.19720 8.26811 8.83778 8.98413 9.54402 11.02156 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003051 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.827212 B = 9176.425499 C = 9675.311751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.502 3.498 14 O -0.504 6.504 15 C 0.048 3.952 16 O -0.317 6.317 17 C 0.497 3.503 18 O -0.483 6.483 19 C -0.590 4.590 20 S 2.430 3.570 21 C -0.653 4.653 22 O -0.929 6.929 23 O -0.888 6.888 24 C -0.093 4.093 25 C -0.126 4.126 26 C -0.098 4.098 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.114 0.886 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.600 -5.590 22.229 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.327 5.327 4 C 0.130 3.870 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.378 6.378 15 C -0.029 4.029 16 O -0.232 6.232 17 C 0.337 3.663 18 O -0.370 6.370 19 C -0.676 4.676 20 S 2.607 3.393 21 C -0.803 4.803 22 O -0.926 6.926 23 O -0.885 6.885 24 C -0.131 4.131 25 C -0.164 4.164 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.941 -4.497 22.069 23.568 hybrid contribution 0.303 -1.094 -0.663 1.314 sum -6.638 -5.592 21.407 23.099 Atomic orbital electron populations 1.22238 0.96576 1.01669 1.02399 1.21508 0.93710 0.84058 1.03021 1.48214 1.64051 1.13351 1.07071 1.19344 0.96500 0.93760 0.77438 1.21462 0.96855 1.32044 1.06345 0.92333 1.24931 0.97921 0.94838 0.96368 1.69940 1.35634 1.33318 1.14374 0.86427 0.84547 0.78113 0.78234 1.19812 1.20992 1.20801 1.19643 0.80305 0.87364 0.84131 1.90799 1.43516 1.17043 1.86414 1.23151 1.02890 0.92659 0.84234 1.86659 1.78102 1.44769 1.13637 1.21588 0.74978 0.86309 0.83442 1.90646 1.41301 1.18678 1.86391 1.31241 1.11690 1.24852 0.99856 1.07999 0.79111 0.76162 0.75980 1.30241 1.25293 1.12579 1.12166 1.93602 1.85531 1.67140 1.46331 1.93752 1.69781 1.76428 1.48573 1.22680 0.89841 1.01584 0.98963 1.22837 0.94421 0.98470 1.00686 1.22774 1.00288 1.00864 0.89636 0.93241 0.91705 0.91907 0.89357 0.91865 0.94632 0.93607 0.92723 0.88393 0.88222 0.85214 0.84419 0.85297 0.88678 0.86968 0.89768 0.88640 0.86770 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.15 0.38 -1.75 16 2 C 0.10 1.53 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -12.18 2.46 -175.05 -0.43 -12.61 16 4 C 0.25 6.35 5.16 -5.19 -0.03 6.33 16 5 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.50 10.47 7.75 -10.99 -0.09 10.39 16 14 O -0.50 -13.08 16.08 -14.10 -0.23 -13.30 16 15 C 0.05 0.74 4.50 36.00 0.16 0.90 16 16 O -0.32 -5.04 8.53 -48.12 -0.41 -5.45 16 17 C 0.50 6.30 6.30 36.01 0.23 6.53 16 18 O -0.48 -6.36 15.08 -18.75 -0.28 -6.64 16 19 C -0.59 -5.90 1.13 -90.95 -0.10 -6.00 16 20 S 2.43 27.21 4.74 -107.50 -0.51 26.70 16 21 C -0.65 -5.23 10.40 101.05 1.05 -4.18 16 22 O -0.93 -11.19 17.52 -57.83 -1.01 -12.20 16 23 O -0.89 -14.74 17.18 -63.50 -1.09 -15.83 16 24 C -0.09 -0.80 7.25 -25.92 -0.19 -0.99 16 25 C -0.13 -0.89 7.69 -25.92 -0.20 -1.09 16 26 C -0.10 -0.68 6.97 -25.92 -0.18 -0.86 16 27 H 0.05 0.58 7.22 -51.93 -0.37 0.20 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.33 7.42 -51.92 -0.39 0.95 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.10 1.22 7.18 -51.93 -0.37 0.85 16 36 H 0.10 1.36 7.39 -51.93 -0.38 0.98 16 37 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.14 0.97 8.14 -51.92 -0.42 0.54 16 39 H 0.13 1.07 7.72 -51.92 -0.40 0.67 16 40 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.11 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.77 7.58 -51.93 -0.39 0.38 16 44 H 0.11 0.57 7.63 -51.93 -0.40 0.18 16 45 H 0.10 0.63 7.66 -51.93 -0.40 0.23 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -38.61 389.29 -8.56 -47.18 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.78 Total: -2.17 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 0.59 Total: -2.74 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.31 Total: -38.27 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -3.02 Total: -53.43 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 27.21 SS G_CDS: -0.51 Total: 26.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.61 -8.56 -47.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796186426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.286 kcal (2) G-P(sol) polarization free energy of solvation -38.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds