Wall clock time and date at job start Wed Apr 1 2020 05:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47126 * 2 1 4 4 O 1.45206 * 109.46778 * 239.99973 * 2 1 3 5 5 C 1.34229 * 116.99962 * 90.00390 * 4 2 1 6 6 O 1.20830 * 120.00138 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99990 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.47087 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.46990 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00077 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99901 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99987 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99821 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47245 * 90.00554 * 13 11 9 15 15 H 1.48507 * 109.47173 * 210.00471 * 13 11 9 16 16 H 1.48497 * 109.47499 * 330.00312 * 13 11 9 17 17 C 1.50699 * 109.47030 * 120.00417 * 2 1 3 18 18 O 1.21279 * 120.00406 * 119.99668 * 17 2 1 19 19 N 1.34780 * 119.99563 * 299.99249 * 17 2 1 20 20 C 1.46499 * 120.00229 * 0.02562 * 19 17 2 21 21 C 1.46499 * 119.99546 * 180.02562 * 19 17 2 22 22 H 1.08996 * 110.01485 * 358.61915 * 21 19 17 23 23 C 1.53874 * 110.02749 * 120.00421 * 21 19 17 24 24 C 1.54163 * 108.70661 * 166.46876 * 23 21 19 25 25 S 1.82920 * 105.08582 * 332.09287 * 24 23 21 26 26 O 1.42102 * 109.35520 * 115.52193 * 25 24 23 27 27 O 1.42106 * 109.35351 * 248.72512 * 25 24 23 28 28 C 1.55054 * 110.02805 * 237.19341 * 21 19 17 29 29 H 1.09000 * 109.46647 * 300.00171 * 1 2 3 30 30 H 1.09000 * 109.46709 * 59.99685 * 1 2 3 31 31 H 1.08990 * 109.47561 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46912 * 299.99516 * 7 5 4 33 33 H 1.08998 * 109.46846 * 59.99944 * 7 5 4 34 34 H 1.09002 * 109.46771 * 300.00012 * 8 7 5 35 35 H 1.08996 * 109.46811 * 59.99462 * 8 7 5 36 36 H 0.97003 * 120.00041 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.47391 * 89.99442 * 20 19 17 38 38 H 1.09001 * 109.46813 * 329.99499 * 20 19 17 39 39 H 1.09004 * 109.47041 * 209.99626 * 20 19 17 40 40 H 1.08996 * 109.64765 * 286.32379 * 23 21 19 41 41 H 1.09002 * 109.64843 * 46.61964 * 23 21 19 42 42 H 1.08993 * 110.32054 * 90.99269 * 24 23 21 43 43 H 1.08998 * 110.32159 * 213.19305 * 24 23 21 44 44 H 1.09003 * 110.78711 * 316.54954 * 28 21 19 45 45 H 1.09001 * 110.78597 * 80.00495 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2812 6 8 1.9974 1.2517 -2.2507 7 6 2.7192 -0.5771 -3.5492 8 6 2.8644 0.4892 -4.6369 9 6 3.3659 -0.1520 -5.9051 10 1 3.5619 -1.2137 -5.9325 11 6 3.5755 0.6170 -7.0302 12 7 4.0136 0.0576 -8.1368 13 14 3.2371 2.4535 -6.9825 14 1 4.4673 3.1729 -6.5651 15 1 2.8270 2.9165 -8.3327 16 1 2.1480 2.7312 -6.0121 17 6 2.0323 -0.7105 1.2304 18 8 2.7295 -1.6966 1.1192 19 7 1.7068 -0.2499 2.4545 20 6 0.8642 0.9409 2.5890 21 6 2.1955 -0.9403 3.6506 22 1 2.7826 -1.8128 3.3641 23 6 3.0525 0.0164 4.4981 24 6 3.2648 -0.6115 5.8899 25 16 1.7999 -1.6725 6.1621 26 8 2.2100 -3.0308 6.2404 27 8 0.9979 -1.1126 7.1930 28 6 1.0010 -1.3716 4.5402 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 3.6883 -1.0400 -3.3632 33 1 2.0103 -1.3372 -3.8774 34 1 1.8955 0.9526 -4.8230 35 1 3.5734 1.2491 -4.3084 36 1 4.1607 0.5986 -8.9284 37 1 -0.1837 0.6428 2.6224 38 1 1.0275 1.5996 1.7360 39 1 1.1220 1.4665 3.5085 40 1 4.0171 0.1702 4.0144 41 1 2.5402 0.9729 4.6019 42 1 4.1742 -1.2123 5.8994 43 1 3.3159 0.1660 6.6521 44 1 0.2648 -0.5712 4.6140 45 1 0.5444 -2.2848 4.1585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:06 Heat of formation + Delta-G solvation = -210.400008 kcal Electronic energy + Delta-G solvation = -28602.806246 eV Core-core repulsion = 24326.320848 eV Total energy + Delta-G solvation = -4276.485398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07171 -41.02542 -38.36392 -38.13254 -37.58473 -37.10270 -35.64861 -35.42013 -33.53628 -32.61142 -30.56247 -28.54129 -28.15580 -26.55213 -25.38663 -23.82972 -22.35215 -21.42954 -20.56137 -19.87379 -19.51417 -18.67519 -18.43003 -18.04896 -17.60287 -17.45578 -16.97789 -16.72911 -16.53755 -16.25609 -16.06679 -15.40996 -15.28404 -15.14169 -14.91520 -14.75367 -14.58997 -14.21488 -13.80357 -13.68026 -13.54095 -13.39497 -13.32522 -13.26141 -13.15106 -13.09230 -12.94960 -12.89150 -12.44192 -12.27545 -12.07901 -12.04233 -11.93198 -11.82249 -11.78106 -11.52670 -11.42498 -11.40612 -10.89914 -10.78751 -9.92621 -8.31264 -6.36374 -0.99453 1.05322 1.14716 1.27444 1.36096 1.37694 1.51222 1.57002 2.05214 2.35289 2.58974 2.99301 3.03883 3.13378 3.34550 3.48638 3.62686 3.67559 3.78226 3.84503 3.88981 3.93381 4.17493 4.28000 4.35635 4.45863 4.50726 4.58461 4.61448 4.61698 4.74743 4.81122 4.84648 4.93708 4.99723 5.08480 5.18144 5.26468 5.32497 5.35532 5.57822 5.99593 6.21221 6.64519 6.73605 6.85551 7.28610 8.84422 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.001888 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.248590 B =14825.051395 C =15047.312561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.059 3.941 3 H 0.119 0.881 4 O -0.344 6.344 5 C 0.473 3.527 6 O -0.528 6.528 7 C -0.094 4.094 8 C 0.005 3.995 9 C -0.535 4.535 10 H 0.047 0.953 11 C 0.011 3.989 12 N -0.944 5.944 13 Si 0.944 3.056 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.253 1.253 17 C 0.521 3.479 18 O -0.558 6.558 19 N -0.588 5.588 20 C 0.039 3.961 21 C 0.133 3.867 22 H 0.105 0.895 23 C -0.127 4.127 24 C -0.565 4.565 25 S 2.400 3.600 26 O -0.981 6.981 27 O -0.968 6.968 28 C -0.594 4.594 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.268 0.732 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.150 0.850 43 H 0.170 0.830 44 H 0.173 0.827 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 4.769 33.560 34.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 H 0.137 0.863 4 O -0.260 6.260 5 C 0.318 3.682 6 O -0.417 6.417 7 C -0.131 4.131 8 C -0.032 4.032 9 C -0.573 4.573 10 H 0.065 0.935 11 C -0.187 4.187 12 N -0.584 5.584 13 Si 0.767 3.233 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.176 1.176 17 C 0.308 3.692 18 O -0.436 6.436 19 N -0.322 5.322 20 C -0.101 4.101 21 C 0.027 3.973 22 H 0.123 0.877 23 C -0.166 4.166 24 C -0.698 4.698 25 S 2.587 3.413 26 O -0.978 6.978 27 O -0.965 6.965 28 C -0.725 4.725 29 H 0.145 0.855 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.168 0.832 43 H 0.188 0.812 44 H 0.191 0.809 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.382 4.059 34.167 35.413 hybrid contribution 0.375 0.793 -1.320 1.584 sum -8.008 4.852 32.847 34.155 Atomic orbital electron populations 1.22463 0.89626 1.04585 1.06199 1.22703 0.97912 0.97621 0.81693 0.86302 1.86667 1.77198 1.42156 1.20013 1.24313 0.72962 0.85712 0.85220 1.90588 1.49262 1.17491 1.84381 1.21357 1.03785 1.00413 0.87564 1.19311 0.97160 0.94479 0.92288 1.21345 1.44361 0.95950 0.95604 0.93487 1.25876 0.94222 1.03688 0.94876 1.70035 1.47330 1.38211 1.02800 0.85749 0.79867 0.79778 0.77857 1.19262 1.20552 1.17634 1.20384 0.79754 0.84051 0.84998 1.90746 1.38738 1.27453 1.86633 1.47508 1.51512 1.30041 1.03107 1.22645 0.95607 0.85793 1.06090 1.21812 0.92972 0.97338 0.85151 0.87736 1.22335 1.02890 1.00261 0.91155 1.30316 1.18354 1.15450 1.05655 1.08506 0.79341 0.75868 0.77606 1.93597 1.82626 1.34702 1.86907 1.93591 1.68483 1.80063 1.54373 1.31026 1.09053 1.13578 1.18828 0.85535 0.91245 0.91188 0.87436 0.86952 0.95876 0.96308 0.92297 0.88984 0.89510 0.86826 0.88166 0.86022 0.83197 0.81226 0.80924 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.18 71.98 0.66 -2.00 16 2 C 0.06 1.30 2.18 29.85 0.07 1.37 16 3 H 0.12 2.44 6.42 -2.39 -0.02 2.43 16 4 O -0.34 -10.80 9.42 -45.06 -0.42 -11.22 16 5 C 0.47 16.63 7.93 71.24 0.56 17.20 16 6 O -0.53 -19.99 15.20 21.95 0.33 -19.65 16 7 C -0.09 -3.60 5.75 29.85 0.17 -3.43 16 8 C 0.01 0.25 3.33 29.85 0.10 0.34 16 9 C -0.53 -30.31 9.66 25.60 0.25 -30.06 16 10 H 0.05 2.86 7.99 -2.91 -0.02 2.83 16 11 C 0.01 0.65 5.47 84.66 0.46 1.11 16 12 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 13 Si 0.94 44.65 27.47 68.60 1.88 46.53 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 17 C 0.52 11.19 7.16 87.66 0.63 11.81 16 18 O -0.56 -17.34 15.85 15.77 0.25 -17.09 16 19 N -0.59 -6.51 2.82 -817.01 -2.31 -8.82 16 20 C 0.04 0.09 7.61 127.77 0.97 1.07 16 21 C 0.13 1.20 2.97 45.99 0.14 1.34 16 22 H 0.10 1.50 6.94 -2.39 -0.02 1.48 16 23 C -0.13 -0.38 5.88 31.28 0.18 -0.20 16 24 C -0.57 -1.17 7.26 72.38 0.53 -0.65 16 25 S 2.40 21.53 6.11 -56.49 -0.34 21.18 16 26 O -0.98 -18.78 18.15 -127.49 -2.31 -21.09 16 27 O -0.97 -14.83 18.15 -127.49 -2.31 -17.14 16 28 C -0.59 -3.15 6.77 72.69 0.49 -2.66 16 29 H 0.13 0.86 4.53 -2.39 -0.01 0.85 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 33 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 34 H 0.02 1.10 7.16 -2.39 -0.02 1.08 16 35 H 0.02 0.89 7.53 -2.39 -0.02 0.87 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.09 -0.11 6.95 -2.39 -0.02 -0.13 16 38 H 0.09 0.25 6.01 -2.39 -0.01 0.23 16 39 H 0.11 -0.42 6.30 -2.38 -0.02 -0.44 16 40 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.12 -0.33 6.33 -2.39 -0.02 -0.34 16 42 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.17 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.17 -0.12 7.28 -2.39 -0.02 -0.14 16 45 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -91.07 375.90 1.24 -89.84 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: 0.96 Total: 0.37 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.21 Total: -4.76 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -2.01 Total: -66.96 kcal Atomic # 8 Polarization: -81.73 SS G_CDS: -4.47 Total: -86.20 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Atomic # 16 Polarization: 21.53 SS G_CDS: -0.34 Total: 21.18 kcal Total: -91.07 1.24 -89.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.563 kcal (2) G-P(sol) polarization free energy of solvation -91.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds