Wall clock time and date at job start Wed Apr 1 2020 05:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.34775 * 120.00337 * 270.00307 * 3 2 1 5 5 O 1.21282 * 120.00258 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99714 * 359.97438 * 4 3 2 7 7 O 1.45200 * 109.46985 * 179.97438 * 6 4 3 8 8 C 1.34229 * 117.00245 * 180.02562 * 7 6 4 9 9 O 1.20827 * 119.99754 * 0.02562 * 8 7 6 10 10 C 1.50695 * 120.00269 * 180.02562 * 8 7 6 11 11 C 1.53004 * 109.47413 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47413 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00103 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00061 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00227 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00304 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46998 * 59.99996 * 16 14 12 18 18 H 1.48494 * 109.47414 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47065 * 300.00214 * 16 14 12 20 20 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 21 21 H 1.08994 * 109.64399 * 0.69774 * 20 3 2 22 22 C 1.53882 * 109.64544 * 121.13220 * 20 3 2 23 23 C 1.54977 * 106.65891 * 167.15175 * 22 20 3 24 24 S 1.83290 * 102.47715 * 317.37919 * 23 22 20 25 25 O 1.42100 * 109.35583 * 269.90270 * 24 23 22 26 26 O 1.42103 * 109.47546 * 136.73390 * 24 23 22 27 27 C 1.54166 * 109.64341 * 240.26715 * 20 3 2 28 28 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 33 33 H 1.08992 * 109.47745 * 300.00370 * 6 4 3 34 34 H 1.09002 * 109.46636 * 60.00675 * 6 4 3 35 35 H 1.08998 * 109.47200 * 299.99569 * 10 8 7 36 36 H 1.09004 * 109.47136 * 59.99532 * 10 8 7 37 37 H 1.08998 * 109.46830 * 300.00095 * 11 10 8 38 38 H 1.09002 * 109.46858 * 59.99337 * 11 10 8 39 39 H 0.96998 * 120.00037 * 179.97438 * 15 14 12 40 40 H 1.09006 * 110.02184 * 286.31811 * 22 20 3 41 41 H 1.08992 * 110.02841 * 47.73749 * 22 20 3 42 42 H 1.08995 * 110.75793 * 199.17680 * 23 22 20 43 43 H 1.09004 * 111.07266 * 75.72460 * 23 22 20 44 44 H 1.08993 * 110.32274 * 331.14544 * 27 20 3 45 45 H 1.09002 * 110.31685 * 93.23775 * 27 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2428 2.0167 -1.1671 5 8 2.6475 3.1600 -1.1671 6 6 1.9922 1.3061 -2.4723 7 8 2.3059 2.1960 -3.5759 8 6 2.1348 1.7124 -4.8163 9 8 1.7355 0.5830 -4.9746 10 6 2.4405 2.5780 -6.0113 11 6 2.1632 1.7923 -7.2946 12 6 2.4696 2.6577 -8.4897 13 1 2.8260 3.6673 -8.3481 14 6 2.2939 2.1609 -9.7637 15 7 1.8594 0.9316 -9.9361 16 14 2.6729 3.2338 -11.2451 17 1 4.1016 3.6375 -11.2114 18 1 2.4039 2.4712 -12.4905 19 1 1.8152 4.4456 -11.2111 20 6 2.2625 2.0718 1.2688 21 1 2.0391 1.4022 2.0993 22 6 3.7345 2.5140 1.3421 23 6 3.8421 3.5053 2.5286 24 16 2.3422 4.5377 2.3191 25 8 2.6499 5.6535 1.4947 26 8 1.7261 4.7404 3.5835 27 6 1.3680 3.3242 1.3577 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.6226 0.4189 -2.5299 34 1 0.9443 1.0116 -2.5301 35 1 1.8109 3.4674 -5.9864 36 1 3.4892 2.8744 -5.9866 37 1 2.7931 0.9031 -7.3194 38 1 1.1147 1.4956 -7.3195 39 1 1.7354 0.5823 -10.8325 40 1 4.3752 1.6504 1.5208 41 1 4.0227 3.0075 0.4141 42 1 4.7439 4.1116 2.4448 43 1 3.8190 2.9786 3.4826 44 1 1.1588 3.7115 0.3606 45 1 0.4376 3.0889 1.8745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:33 Heat of formation + Delta-G solvation = -216.645989 kcal Electronic energy + Delta-G solvation = -28730.405816 eV Core-core repulsion = 24453.649572 eV Total energy + Delta-G solvation = -4276.756244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.133 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93507 -41.14073 -38.11193 -38.04507 -37.34100 -37.07652 -35.83995 -35.65676 -33.19245 -31.48882 -30.88308 -29.66230 -27.84370 -25.92502 -24.52575 -24.05121 -22.96375 -21.53037 -20.24832 -19.86508 -19.19975 -18.38749 -18.31810 -17.95599 -17.81328 -17.35857 -17.06946 -16.64826 -16.54012 -16.46689 -16.21956 -15.24072 -15.11752 -15.07125 -14.86049 -14.61038 -14.27258 -14.04804 -13.93043 -13.77163 -13.68211 -13.29716 -13.19802 -13.13253 -13.04584 -12.92709 -12.80629 -12.66950 -12.55362 -12.45094 -12.18132 -12.01013 -11.81950 -11.77998 -11.65913 -11.51809 -11.31968 -11.25892 -10.79391 -10.56807 -9.93728 -8.20360 -6.33574 -0.94474 1.13147 1.15557 1.28738 1.43712 1.47079 1.54796 1.60678 2.09960 2.43484 2.63483 3.01512 3.13378 3.19086 3.39955 3.61338 3.65519 3.83286 3.91257 3.92687 3.98962 4.05722 4.13701 4.32974 4.41712 4.42669 4.45464 4.57325 4.60417 4.74634 4.79093 4.86550 4.91740 4.98441 5.06091 5.22124 5.36815 5.46099 5.48181 5.55130 5.80107 6.06517 6.13431 6.70507 6.83944 6.91098 7.36327 8.91832 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.002081 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.756316 B =13448.687503 C =14478.878192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.091 3.909 3 N -0.591 5.591 4 C 0.518 3.482 5 O -0.543 6.543 6 C 0.035 3.965 7 O -0.346 6.346 8 C 0.471 3.529 9 O -0.533 6.533 10 C -0.096 4.096 11 C 0.041 3.959 12 C -0.547 4.547 13 H 0.074 0.926 14 C -0.002 4.002 15 N -0.933 5.933 16 Si 0.972 3.028 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.158 3.842 21 H 0.167 0.833 22 C -0.148 4.148 23 C -0.550 4.550 24 S 2.382 3.618 25 O -0.988 6.988 26 O -0.974 6.974 27 C -0.607 4.607 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.114 0.886 37 H -0.005 1.005 38 H -0.007 1.007 39 H 0.264 0.736 40 H 0.131 0.869 41 H 0.078 0.922 42 H 0.149 0.851 43 H 0.179 0.821 44 H 0.125 0.875 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 -3.854 32.072 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.305 3.695 5 O -0.420 6.420 6 C -0.042 4.042 7 O -0.263 6.263 8 C 0.316 3.684 9 O -0.422 6.422 10 C -0.134 4.134 11 C 0.004 3.996 12 C -0.585 4.585 13 H 0.092 0.908 14 C -0.200 4.200 15 N -0.573 5.573 16 Si 0.796 3.204 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.190 1.190 20 C 0.054 3.946 21 H 0.184 0.816 22 C -0.187 4.187 23 C -0.683 4.683 24 S 2.570 3.430 25 O -0.985 6.985 26 O -0.971 6.971 27 C -0.738 4.738 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.073 0.927 40 H 0.150 0.850 41 H 0.097 0.903 42 H 0.167 0.833 43 H 0.196 0.804 44 H 0.143 0.857 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.377 -2.771 32.247 32.395 hybrid contribution -0.134 -0.450 -1.535 1.605 sum 1.243 -3.221 30.712 30.905 Atomic orbital electron populations 1.22280 0.95381 1.03668 1.02298 1.22124 0.94950 0.79618 1.06329 1.47926 1.65444 1.15509 1.03584 1.20175 0.77549 0.86332 0.85438 1.90758 1.45161 1.18595 1.87496 1.23036 1.04579 0.93191 0.83364 1.86600 1.79365 1.45406 1.14895 1.24464 0.72836 0.87020 0.84123 1.90625 1.43552 1.21395 1.86630 1.21537 1.05221 0.98638 0.87977 1.18782 0.95583 0.94609 0.90611 1.21601 1.45000 1.00353 0.91497 0.90814 1.26046 0.94735 0.96443 1.02738 1.70134 1.46838 1.17111 1.23193 0.85399 0.79289 0.78441 0.77291 1.18859 1.21104 1.18961 1.21814 0.92112 0.92872 0.87814 0.81600 1.22752 0.96854 1.01635 0.97453 1.30357 1.17600 1.12306 1.08084 1.08964 0.80763 0.78283 0.74979 1.93583 1.84365 1.50570 1.70005 1.93564 1.76320 1.86230 1.40958 1.30885 1.13586 1.13584 1.15741 0.94298 0.89562 0.91100 0.85449 0.89459 0.86456 0.87216 0.87027 0.86822 0.98704 0.98842 0.92685 0.85036 0.90324 0.83265 0.80364 0.85709 0.81549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 10.24 71.98 0.74 -0.34 16 2 C 0.09 0.42 5.91 86.38 0.51 0.93 16 3 N -0.59 -6.42 2.45 -793.99 -1.94 -8.36 16 4 C 0.52 10.87 6.91 87.66 0.61 11.48 16 5 O -0.54 -15.78 12.91 15.76 0.20 -15.57 16 6 C 0.03 0.82 4.50 71.24 0.32 1.14 16 7 O -0.35 -11.46 9.75 -45.06 -0.44 -11.90 16 8 C 0.47 18.15 7.96 71.23 0.57 18.72 16 9 O -0.53 -23.12 15.73 21.96 0.35 -22.78 16 10 C -0.10 -3.95 5.75 29.85 0.17 -3.78 16 11 C 0.04 2.22 4.26 29.85 0.13 2.35 16 12 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16 13 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 14 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 15 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 16 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 20 C 0.16 1.12 2.98 45.68 0.14 1.25 16 21 H 0.17 -0.50 7.80 -2.39 -0.02 -0.51 16 22 C -0.15 -1.20 5.78 31.57 0.18 -1.01 16 23 C -0.55 -3.34 7.31 72.66 0.53 -2.81 16 24 S 2.38 37.67 6.10 -56.49 -0.34 37.32 16 25 O -0.99 -27.71 18.15 -127.47 -2.31 -30.03 16 26 O -0.97 -20.14 18.15 -127.47 -2.31 -22.45 16 27 C -0.61 -7.20 6.54 72.38 0.47 -6.73 16 28 H 0.04 0.42 7.22 -2.39 -0.02 0.40 16 29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.30 16 31 H 0.13 -0.32 7.92 -2.39 -0.02 -0.34 16 32 H 0.09 0.46 6.44 -2.39 -0.02 0.44 16 33 H 0.12 2.29 7.39 -2.39 -0.02 2.27 16 34 H 0.11 2.32 7.18 -2.39 -0.02 2.30 16 35 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 36 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 37 H -0.01 -0.32 8.10 -2.39 -0.02 -0.34 16 38 H -0.01 -0.41 8.10 -2.39 -0.02 -0.43 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 41 H 0.08 1.28 5.92 -2.39 -0.01 1.26 16 42 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.18 -0.27 8.14 -2.38 -0.02 -0.29 16 44 H 0.12 2.36 6.16 -2.39 -0.01 2.35 16 45 H 0.17 0.98 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -92.26 383.51 1.57 -90.69 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 1.00 Total: 3.14 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.06 Total: -8.84 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -1.66 Total: -65.48 kcal Atomic # 8 Polarization: -98.22 SS G_CDS: -4.52 Total: -102.73 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 37.67 SS G_CDS: -0.34 Total: 37.32 kcal Total: -92.26 1.57 -90.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.952 kcal (2) G-P(sol) polarization free energy of solvation -92.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds