Wall clock time and date at job start Wed Apr 1 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46974 * 2 1 4 4 C 1.46502 * 119.99655 * 269.99449 * 3 2 1 5 5 C 1.50695 * 109.47102 * 270.00124 * 4 3 2 6 6 H 1.07998 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99965 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99889 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47182 * 89.99510 * 9 7 5 11 11 H 1.48492 * 109.47063 * 209.99881 * 9 7 5 12 12 H 1.48495 * 109.46664 * 329.99696 * 9 7 5 13 13 C 1.34779 * 120.00135 * 89.99918 * 3 2 1 14 14 O 1.21276 * 119.99801 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99744 * 359.97438 * 13 3 2 16 16 S 1.81401 * 109.46950 * 180.02562 * 15 13 3 17 17 C 1.76196 * 103.00151 * 180.02562 * 16 15 13 18 18 C 1.39062 * 120.02174 * 0.02562 * 17 16 15 19 19 C 1.38141 * 120.15727 * 179.97438 * 18 17 16 20 20 C 1.38112 * 120.19918 * 0.02562 * 19 18 17 21 21 C 1.39335 * 120.04482 * 359.97438 * 20 19 18 22 22 C 1.48477 * 120.07585 * 180.02562 * 21 20 19 23 23 N 1.34046 * 126.66950 * 179.68853 * 22 21 20 24 24 N 1.28988 * 107.26319 * 179.83552 * 23 22 21 25 25 N 1.28723 * 108.94378 * 0.43591 * 24 23 22 26 26 H 0.97005 * 125.33875 * 179.72348 * 25 24 23 27 27 N 1.28868 * 109.31778 * 359.72442 * 25 24 23 28 28 C 1.38762 * 120.02319 * 180.02562 * 17 16 15 29 29 H 1.08997 * 109.47342 * 300.00394 * 1 2 3 30 30 H 1.09003 * 109.46977 * 60.00010 * 1 2 3 31 31 H 1.08997 * 109.47420 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46904 * 239.99761 * 2 1 3 33 33 H 1.08999 * 109.46536 * 119.99830 * 2 1 3 34 34 H 1.09003 * 109.47107 * 30.00775 * 4 3 2 35 35 H 1.09003 * 109.46666 * 150.00160 * 4 3 2 36 36 H 0.96996 * 120.00497 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47006 * 59.99995 * 15 13 3 38 38 H 1.08997 * 109.46888 * 299.99586 * 15 13 3 39 39 H 1.07998 * 119.92242 * 359.97438 * 18 17 16 40 40 H 1.07995 * 119.89642 * 180.02562 * 19 18 17 41 41 H 1.08007 * 119.97677 * 180.27598 * 20 19 18 42 42 H 1.07999 * 120.09882 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1263 -3.6176 9 14 5.9136 2.0962 -3.4170 10 1 5.9763 0.8756 -4.2604 11 1 6.3931 3.2637 -4.1993 12 1 6.7736 1.9155 -2.2200 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9912 1.3064 2.4723 16 16 2.3835 2.4180 3.8511 17 6 2.0346 1.4305 5.2680 18 6 1.5750 0.1274 5.1119 19 6 1.3010 -0.6494 6.2208 20 6 1.4815 -0.1362 7.4903 21 6 1.9416 1.1684 7.6564 22 6 2.1364 1.7206 9.0209 23 7 2.5755 2.9482 9.3325 24 7 2.5986 3.0312 10.6195 25 7 2.2039 1.9118 11.1176 26 1 2.1337 1.7126 12.0644 27 7 1.9166 1.0973 10.1612 28 6 2.2182 1.9527 6.5405 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6756 3.5167 -4.4435 37 1 2.6211 0.4186 2.5302 38 1 0.9432 1.0127 2.5298 39 1 1.4319 -0.2783 4.1213 40 1 0.9447 -1.6611 6.0947 41 1 1.2704 -0.7483 8.3548 42 1 2.5754 2.9643 6.6645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821207950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:22 Heat of formation + Delta-G solvation = 118.384262 kcal Electronic energy + Delta-G solvation = -26196.219422 eV Core-core repulsion = 22305.885602 eV Total energy + Delta-G solvation = -3890.333820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.78780 -39.32293 -39.12793 -35.43001 -34.76266 -33.97019 -32.89772 -31.30780 -31.16649 -30.26553 -29.79445 -26.75283 -25.15702 -24.78862 -23.14682 -23.02200 -22.49354 -21.93426 -19.58644 -18.80543 -17.75078 -17.47153 -16.81385 -16.46279 -16.22694 -15.83134 -15.41438 -15.18023 -14.88416 -14.38397 -14.18546 -13.90325 -13.63783 -13.55381 -13.48297 -13.20587 -12.76389 -12.70620 -12.10322 -12.08903 -11.81627 -11.73499 -11.71299 -11.68654 -11.39337 -11.37318 -11.21319 -10.95159 -10.82255 -10.58277 -10.17183 -10.06949 -9.88507 -9.68272 -9.14403 -9.06298 -8.45962 -7.79246 -7.38085 -6.07021 -4.11998 0.37025 0.85832 1.02068 1.34332 1.89506 2.02243 2.40301 3.20354 3.29244 3.34165 3.36631 3.41315 3.45656 3.79475 3.87785 4.42685 4.61715 4.70859 4.79850 4.85361 5.00915 5.02977 5.09482 5.13766 5.23486 5.27689 5.33480 5.37822 5.53181 5.63251 5.67396 5.92744 5.93863 6.00729 6.07840 6.11891 6.14562 6.39679 6.50012 6.95694 7.37812 7.44653 7.80904 7.88498 8.18617 8.26074 8.80266 8.96161 9.53164 11.01103 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.002045 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.620750 B =13687.806700 C =14455.884304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.523 3.477 14 O -0.521 6.521 15 C -0.151 4.151 16 S -0.018 6.018 17 C -0.099 4.099 18 C -0.118 4.118 19 C -0.100 4.100 20 C -0.093 4.093 21 C -0.003 4.003 22 C 0.223 3.777 23 N -0.264 5.264 24 N -0.048 5.048 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.294 5.294 28 C -0.058 4.058 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.035 0.965 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 -10.793 25.817 28.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.322 5.322 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.306 3.694 14 O -0.397 6.397 15 C -0.302 4.302 16 S 0.228 5.772 17 C -0.212 4.212 18 C -0.143 4.143 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.008 4.008 22 C -0.057 4.057 23 N -0.137 5.137 24 N -0.044 5.044 25 N -0.075 5.075 26 H 0.330 0.670 27 N -0.146 5.146 28 C -0.084 4.084 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.661 -8.396 25.825 27.960 hybrid contribution 0.280 -2.140 0.040 2.158 sum -6.382 -10.536 25.864 28.648 Atomic orbital electron populations 1.22236 0.96596 1.01569 1.02481 1.21470 0.93641 0.84057 1.02844 1.48195 1.63433 1.13301 1.07289 1.19335 0.96466 0.93720 0.77639 1.21407 0.96823 1.32090 1.06370 0.92408 1.24936 0.97917 0.94844 0.96389 1.69925 1.35730 1.33279 1.14306 0.86488 0.84605 0.77680 0.78622 1.20655 1.21049 1.19836 1.19268 0.79396 0.86781 0.83920 1.90734 1.45140 1.17460 1.86395 1.24043 1.06432 1.03086 0.96663 1.86486 1.81631 1.16967 0.92128 1.22177 1.02779 0.97844 0.98433 1.21405 1.00049 0.93028 0.99823 1.20971 0.99488 0.99932 0.91547 1.21101 0.98733 0.93744 0.98060 1.17056 1.03884 0.94354 0.85501 1.23676 0.99682 0.88632 0.93672 1.76151 1.17366 1.17466 1.02725 1.78947 1.13723 1.07676 1.04011 1.47738 1.41278 1.06696 1.11750 0.67047 1.74903 1.22096 1.21246 0.96343 1.20699 0.98412 1.00204 0.89114 0.93109 0.91799 0.92003 0.89577 0.91849 0.94739 0.93687 0.92660 0.86985 0.87077 0.85312 0.84929 0.84925 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.50 16 3 N -0.59 -11.83 2.46 -175.06 -0.43 -12.26 16 4 C 0.25 6.27 5.16 -5.19 -0.03 6.24 16 5 C -0.53 -14.68 9.39 -34.44 -0.32 -15.01 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.52 10.44 7.69 -10.98 -0.08 10.36 16 14 O -0.52 -12.89 15.44 5.56 0.09 -12.80 16 15 C -0.15 -2.12 3.37 36.01 0.12 -2.00 16 16 S -0.02 -0.27 21.06 -107.50 -2.26 -2.53 16 17 C -0.10 -1.18 6.11 -39.08 -0.24 -1.42 16 18 C -0.12 -1.15 9.36 -39.31 -0.37 -1.52 16 19 C -0.10 -0.81 10.03 -39.66 -0.40 -1.21 16 20 C -0.09 -0.81 9.69 -39.22 -0.38 -1.19 16 21 C 0.00 -0.03 5.87 -104.92 -0.62 -0.65 16 22 C 0.22 2.41 7.93 -156.31 -1.24 1.17 16 23 N -0.26 -3.12 12.23 32.16 0.39 -2.72 16 24 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 25 N -0.23 -1.46 7.90 60.35 0.48 -0.98 16 26 H 0.48 0.62 8.96 -340.37 -3.05 -2.43 16 27 N -0.29 -2.57 12.08 32.17 0.39 -2.18 16 28 C -0.06 -0.68 9.44 -39.04 -0.37 -1.05 16 29 H 0.05 0.58 7.22 -51.93 -0.37 0.20 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.32 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 34 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.11 1.34 7.00 -51.92 -0.36 0.97 16 38 H 0.11 1.26 6.79 -51.92 -0.35 0.91 16 39 H 0.13 1.06 5.86 -52.49 -0.31 0.75 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.94 7.88 -52.48 -0.41 0.52 16 42 H 0.14 1.70 7.88 -52.49 -0.41 1.29 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -35.49 376.52 -10.46 -45.94 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -7.65 Total: -4.84 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.66 Total: -4.82 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 2.38 Total: -43.32 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.26 Total: -2.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.49 -10.46 -45.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821207950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.329 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds