Wall clock time and date at job start Wed Apr 1 2020 05:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46974 * 2 1 4 4 C 1.46502 * 119.99655 * 269.99449 * 3 2 1 5 5 C 1.50695 * 109.47102 * 270.00124 * 4 3 2 6 6 H 1.07998 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99965 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99889 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47182 * 89.99510 * 9 7 5 11 11 H 1.48492 * 109.47063 * 209.99881 * 9 7 5 12 12 H 1.48495 * 109.46664 * 329.99696 * 9 7 5 13 13 C 1.34779 * 120.00135 * 89.99918 * 3 2 1 14 14 O 1.21276 * 119.99801 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99744 * 359.97438 * 13 3 2 16 16 S 1.81401 * 109.46950 * 180.02562 * 15 13 3 17 17 C 1.76196 * 103.00151 * 180.02562 * 16 15 13 18 18 C 1.39062 * 120.02174 * 0.02562 * 17 16 15 19 19 C 1.38141 * 120.15727 * 179.97438 * 18 17 16 20 20 C 1.38112 * 120.19918 * 0.02562 * 19 18 17 21 21 C 1.39335 * 120.04482 * 359.97438 * 20 19 18 22 22 C 1.48477 * 120.07585 * 180.02562 * 21 20 19 23 23 N 1.34046 * 126.66950 * 179.68853 * 22 21 20 24 24 N 1.28988 * 107.26319 * 179.83552 * 23 22 21 25 25 N 1.28723 * 108.94378 * 0.43591 * 24 23 22 26 26 H 0.97005 * 125.33875 * 179.72348 * 25 24 23 27 27 N 1.28868 * 109.31778 * 359.72442 * 25 24 23 28 28 C 1.38762 * 120.02319 * 180.02562 * 17 16 15 29 29 H 1.08997 * 109.47342 * 300.00394 * 1 2 3 30 30 H 1.09003 * 109.46977 * 60.00010 * 1 2 3 31 31 H 1.08997 * 109.47420 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46904 * 239.99761 * 2 1 3 33 33 H 1.08999 * 109.46536 * 119.99830 * 2 1 3 34 34 H 1.09003 * 109.47107 * 30.00775 * 4 3 2 35 35 H 1.09003 * 109.46666 * 150.00160 * 4 3 2 36 36 H 0.96996 * 120.00497 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47006 * 59.99995 * 15 13 3 38 38 H 1.08997 * 109.46888 * 299.99586 * 15 13 3 39 39 H 1.07998 * 119.92242 * 359.97438 * 18 17 16 40 40 H 1.07995 * 119.89642 * 180.02562 * 19 18 17 41 41 H 1.08007 * 119.97677 * 180.27598 * 20 19 18 42 42 H 1.07999 * 120.09882 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1263 -3.6176 9 14 5.9136 2.0962 -3.4170 10 1 5.9763 0.8756 -4.2604 11 1 6.3931 3.2637 -4.1993 12 1 6.7736 1.9155 -2.2200 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9912 1.3064 2.4723 16 16 2.3835 2.4180 3.8511 17 6 2.0346 1.4305 5.2680 18 6 1.5750 0.1274 5.1119 19 6 1.3010 -0.6494 6.2208 20 6 1.4815 -0.1362 7.4903 21 6 1.9416 1.1684 7.6564 22 6 2.1364 1.7206 9.0209 23 7 2.5755 2.9482 9.3325 24 7 2.5986 3.0312 10.6195 25 7 2.2039 1.9118 11.1176 26 1 2.1337 1.7126 12.0644 27 7 1.9166 1.0973 10.1612 28 6 2.2182 1.9527 6.5405 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 3.6756 3.5167 -4.4435 37 1 2.6211 0.4186 2.5302 38 1 0.9432 1.0127 2.5298 39 1 1.4319 -0.2783 4.1213 40 1 0.9447 -1.6611 6.0947 41 1 1.2704 -0.7483 8.3548 42 1 2.5754 2.9643 6.6645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821207950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:21 Heat of formation + Delta-G solvation = 94.801441 kcal Electronic energy + Delta-G solvation = -26197.242050 eV Core-core repulsion = 22305.885602 eV Total energy + Delta-G solvation = -3891.356448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.49345 -40.71594 -40.06736 -37.02344 -35.48224 -34.95229 -34.68868 -32.19728 -32.03931 -31.61450 -30.95311 -28.60026 -25.86014 -25.59303 -24.89712 -24.15591 -23.53451 -22.67374 -20.25791 -20.21592 -18.80522 -18.56740 -18.17016 -18.05971 -17.31860 -17.08150 -16.57255 -16.37040 -16.18179 -15.71964 -15.13430 -14.89336 -14.79475 -14.59538 -14.48648 -14.28581 -14.21682 -13.71332 -13.49127 -13.41987 -13.23726 -13.06537 -12.67718 -12.63907 -12.46440 -12.45585 -12.42240 -12.17053 -12.12759 -12.10731 -11.88797 -11.71844 -11.07366 -10.77654 -10.67433 -10.63420 -9.79865 -9.49209 -8.44278 -8.22165 -6.36541 -0.35021 0.13959 0.26237 0.27576 1.26196 1.36714 1.38350 1.40297 1.43370 1.50133 1.70131 2.26886 2.42960 2.62629 2.72028 3.07756 3.15455 3.52462 3.91741 3.95897 3.96946 4.06242 4.15495 4.25247 4.32546 4.39381 4.44372 4.52190 4.65323 4.66650 4.92030 4.93887 5.00311 5.06924 5.20224 5.22767 5.34852 5.40585 5.42359 5.57108 5.60312 5.81386 5.82734 6.05810 6.65168 6.74600 7.08854 7.25107 7.39935 8.84884 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.002045 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.620750 B =13687.806700 C =14455.884304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.274 1.274 13 C 0.512 3.488 14 O -0.582 6.582 15 C -0.124 4.124 16 S -0.092 6.092 17 C -0.102 4.102 18 C -0.116 4.116 19 C -0.088 4.088 20 C -0.084 4.084 21 C -0.013 4.013 22 C 0.209 3.791 23 N -0.301 5.301 24 N -0.058 5.058 25 N -0.198 5.198 26 H 0.495 0.505 27 N -0.286 5.286 28 C -0.074 4.074 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.027 0.973 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.172 0.828 41 H 0.154 0.846 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.001 -14.912 27.843 32.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.326 5.326 4 C 0.141 3.859 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.299 3.701 14 O -0.463 6.463 15 C -0.274 4.274 16 S 0.153 5.847 17 C -0.215 4.215 18 C -0.141 4.141 19 C -0.108 4.108 20 C -0.107 4.107 21 C -0.018 4.018 22 C -0.070 4.070 23 N -0.173 5.173 24 N -0.053 5.053 25 N -0.049 5.049 26 H 0.355 0.645 27 N -0.139 5.139 28 C -0.100 4.100 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.045 0.955 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.190 0.810 41 H 0.172 0.828 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.224 -12.572 27.900 31.443 hybrid contribution 0.379 -0.913 -0.409 1.070 sum -6.844 -13.485 27.491 31.376 Atomic orbital electron populations 1.22182 0.94395 1.03762 1.01787 1.21862 0.95437 0.80908 1.04452 1.48189 1.63445 1.15299 1.05664 1.18743 0.95416 0.91570 0.80133 1.21700 0.97859 1.31964 1.06481 0.92695 1.25856 1.02322 0.94521 0.96551 1.70047 1.37747 1.34173 1.14781 0.85428 0.79093 0.78183 0.78200 1.18650 1.20855 1.19843 1.20215 0.77947 0.86343 0.85642 1.90704 1.47653 1.20357 1.87539 1.23832 1.09114 1.02322 0.92182 1.86814 1.83127 1.19844 0.94933 1.21920 1.04731 0.98478 0.96336 1.21724 0.98906 0.91824 1.01598 1.21390 0.97816 1.01205 0.90365 1.21433 0.97012 0.92788 0.99422 1.17176 1.04407 0.95183 0.85025 1.23792 1.00309 0.88604 0.94340 1.76140 1.18802 1.18599 1.03717 1.78887 1.14349 1.08568 1.03510 1.47811 1.38951 1.05552 1.12596 0.64520 1.74854 1.21794 1.21145 0.96061 1.20623 0.99496 0.99983 0.89873 0.91984 0.94399 0.88240 0.90620 0.87578 0.95540 0.98550 0.92444 0.83919 0.83531 0.83161 0.81048 0.82794 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 10.24 71.98 0.74 -2.77 16 2 C 0.10 2.58 5.93 86.38 0.51 3.09 16 3 N -0.59 -24.03 2.46 -826.15 -2.03 -26.06 16 4 C 0.26 13.97 5.16 85.63 0.44 14.41 16 5 C -0.54 -30.95 9.39 25.60 0.24 -30.71 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 9 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 13 C 0.51 20.69 7.69 87.66 0.67 21.36 16 14 O -0.58 -30.42 15.44 -3.02 -0.05 -30.47 16 15 C -0.12 -3.25 3.37 71.24 0.24 -3.01 16 16 S -0.09 -2.77 21.06 -56.49 -1.19 -3.96 16 17 C -0.10 -2.32 6.11 22.59 0.14 -2.18 16 18 C -0.12 -1.82 9.36 22.44 0.21 -1.61 16 19 C -0.09 -1.01 10.03 22.22 0.22 -0.79 16 20 C -0.08 -1.17 9.69 22.50 0.22 -0.95 16 21 C -0.01 -0.26 5.87 -20.06 -0.12 -0.37 16 22 C 0.21 4.33 7.93 137.39 1.09 5.42 16 23 N -0.30 -7.15 12.23 -52.18 -0.64 -7.78 16 24 N -0.06 -1.07 13.47 37.02 0.50 -0.57 16 25 N -0.20 -2.17 7.90 37.02 0.29 -1.88 16 26 H 0.50 0.15 8.96 -347.54 -3.12 -2.97 16 27 N -0.29 -4.41 12.08 -52.12 -0.63 -5.04 16 28 C -0.07 -1.74 9.44 22.62 0.21 -1.53 16 29 H 0.06 1.20 7.22 -2.39 -0.02 1.18 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 2.21 8.07 -2.39 -0.02 2.20 16 33 H 0.11 1.97 6.44 -2.39 -0.02 1.95 16 34 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 35 H 0.00 -0.23 7.42 -2.39 -0.02 -0.24 16 36 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.14 2.85 7.00 -2.39 -0.02 2.83 16 38 H 0.15 2.77 6.79 -2.39 -0.02 2.75 16 39 H 0.15 1.66 5.86 -2.91 -0.02 1.64 16 40 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.15 1.50 7.88 -2.91 -0.02 1.48 16 42 H 0.12 3.26 7.88 -2.91 -0.02 3.24 16 Total: -1.00 -84.12 376.52 1.82 -82.30 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -2.04 Total: 1.12 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 5.28 Total: 1.21 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -2.22 Total: -97.25 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -1.19 Total: -3.96 kcal Total: -84.12 1.82 -82.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821207950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.103 kcal (2) G-P(sol) polarization free energy of solvation -84.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds